Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0018630 | OGI:12063790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:23376738-23379604 | ||||||||
| Gene Symbol | HSA1A, hsa1(t), s(t), hst49 | ||||||||||
| DNA seq | aaacaagacaaactgtggatattctcgaagcacatatagaaaaaggagtagtaaattgtctcagcatagcacatacccataactacttagatacttagatatagttaagtagtagatgcctaaggattgtctcagcatagcacatacccataattagttagatatagttaagtagtagatgcccaaggatggatgcacatacttaacatggtggacataaatacagcagaagaatccttcgattgtccctccaatccctttaagcatgatgacattaagcaatcttcaatccagcaagcggcctgctcaagtgagcctccattcctctactttccgttgccatctgttgttttcccttcattttgcttagttcccaactgcataaaaataaaaaaagaagcaaagtcaactggaggatcaaggcaagcaactctcaagagaatgggaagaaggaaatgcaaaaagcaacctattcgatcccatctccaatccattcttttgcattgctctctcttgtttttccttctgcatcatttcactgcattgccaaatacaaccgaaaattgaggagcaaagtcacaagcaatgcaactaattccaggctagattaaaaaaaatggacacagcttgttcattgtgcttaccgtccaatcttttcgattgcactttcttgttttgcctgctgcatcattaaactccgcatccgactgcaccaaaaaatggaaaagaagtcacaaggcgatcaatgcaaactagatacagatggtgagaaaataagcaaatgcgacacactagttaagaaacagggaactgttctgtcggctgtcttaatgcctaatattatatttgctttccagcagagaaacagtaactgttgatgctgtagtttttgatccttcccgatgttccttcaaatcaagctatgatgtttacagttggtaattgattagaccaagaacttagctaaccaaattacttaaggttatgtgctggcaaatcagtaaaactttcaccaaatgaaaggctctactagtttaactgtgcgaaaagaaaaatgaatgtaatgaaatttaattaagaggcaatgtccaagtatagaagaggagtacagaagaataattccaagttattgcttgaatcactattcgcaggattggcagggcattcgatcaaatatgctcatgttacaacatagcaaaccaatcgtcaaagtcatttagctaataaagatatgctctattccaataagctaactgcttagccatttaactatccagttatctgcttgttaattcctaaacagtggctaaagcaattgaatggatattccaactggtattattttcatatttgaacacatcacacaaatggtaaatgtttttgtatcacaaataaaagaaaacatagcaaaccttgtggtgtcgccacctttcaaataagaggggaaccagctggggatgaagttatggccataaaaatatttcatgggcaggtatctctcatcatcttcttcttttccattgatgaagaaggtggctggtggcagcaggaattccgcttcttcttcttcactgatgtagagggtggctggtgacagcagggcttggtttctcatgtccacctcaatcatccagtaaaggccattgcccttgtccccgaggaggaagttgttggccttgtcGTAgaggaggaaggagatggcaaatggattagccatgctcaccaGggggaaagtaggcggcgcatgtggaaggagggGCTggtttgcggcagagcaaatatcccagaacttgccggcttccatggtgaaataacgaatccatctactttcgtggatgtcgaccagacaccatgacttgatgaaagcagagccagcagagctgttgttgcggcctcctgctgcggcattgtcatctatgcagacaagcgtgatatcgccagcgatgttgatggagacagaacgagctggatcagggttgtacttgtcaacgcggcggccacgcatcgcctctgccggcagcggtatgtagttgaagtaacgctgggtcttgacgtcgatgaggatgatgccatggtagcagtcgacgcaggcgaggtagctgtcgtgcaggggaagaacggcgtcggtccaccaacctctgaggtggtggttttggttgggttgctgctgcatctccaggatctggaccttccattgggattgttgggggcaatcagcatagtggttgaggacgcagagctcgacggccttacccttatggatgttgatgtccgccacggtgaaatcgccggcgtcatcggagtggcagaagaagccgacgttctgctctaccatgacccgctgctgctggcaccggtgcggcttgaagtggcggtcgacctcgggggaggagaatccgccgatgaagcaagggggcagccgcgtgagcgacggccgcaacccctcgccgggcctggccgtgtagacgaagtagtccagggggaattggcccggcgcgatggtgtcgaggtcggcgaaagggacgcgcgccgagaggaggatggagccgcggtgggcggcgatgacctcggcgtcgcccaggtcgtagacgcgcggccagccggggcggtggacgtagaggcgggagacggcGggggggtcggcgacgcggagggagacgcggatggggtggccgctgcaggtgtaggcgatctccgacgccgtggggtcgtcgtcccctccaactccgctccagcaacggactatgcggtccaggaccatatatccatgcgtggcacggcgagatctaggttttgccgacggcgcttccatgtcgcctcgccacggcgagatctagggtttgccgccctccaggggacggcggcga
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| CDS seq | atggaagcgccgtcggcaaaacctagatctcgccgtgccacgcatggatatatggtcctggaccgcatagtccgttgctggagcggagttggaggggacgacgaccccacggcgtcggagatcgcctacacctgcagcggccaccccatccgcgtctccctccgcgtcgccgaccccccCgccgtctcccgcctctacgtccaccgccccggctggccgcgcgtctacgacctgggcgacgccgaggtcatcgccgcccaccgcggctccatcctcctctcggcgcgcgtccctttcgccgacctcgacaccatcgcgccgggccaattccccctggactacttcgtctacacggccaggcccggcgaggggttgcggccgtcgctcacgcggctgcccccttgcttcatcggcggattctcctcccccgaggtcgaccgccacttcaagccgcaccggtgccagcagcagcgggtcatggtagagcagaacgtcggcttcttctgccactccgatgacgccggcgatttcaccgtggcggacatcaacatccataagggtaaggccgtcgagctctgcgtcctcaaccactatgctgattgcccccaacaatcccaatggaaggtccagatcctggagatgcagcagcaacccaaccaaaaccaccacctcagaggttggtggaccgacgccgttcttcccctgcacgacagctacctcgcctgcgtcgactgctaccatggcatcatcctcatcgacgtcaagacccagcgttacttcaactacataccgctgccggcagaggcgatgcgtggccgccgcgttgacaagtacaaccctgatccagctcgttctgtctccatcaacatcgctggcgatatcacgcttgtctgcatagatgacaatgccgcagcaggaggccgcaacaacagctctgctggctctgctttcatcaagtcatggtgtctggtcgacatccacgaaagtagatggattcgttatttcaccatggaagccggcaagttctgggatatttgctctgccgcaaaccAGCccctccttccacatgcgccgcctactttccccCtggtgagcatggctaatccatttgccatctccttcctcctcTACgacaaggccaacaacttcctcctcggggacaagggcaatggcctttactggatgattgaggtggacatgagaaaccaagccctgctgtcaccagccaccctctacatcagtgaagaagaagaagcggaattcctgctgccaccagccaccttcttcatcaatggaaaagaagaagatgatgagagatacctgcccatgaaatatttttatggccataacttcatccccagctggttcccctcttatttgaaaggtggcgacaccacaagtcggatgcggagtttaatgatgcagcaggcaaaacaagaaagtgcaatcgaaaagattggacgtgaaatgatgcagaaggaaaaacaagagagagcaatgcaaaagaatggattggagatgggatcgaatagttgggaactaagcaaaatgaagggaaaacaacagatggcaacggaaagtagaggaatggaggctcacttgagcaggccgcttgctggattgaagattgcttaa
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| Protein seq | MEAPSAKPRSRRATHGYMVLDRIVRCWSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGLRPSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHSDDAGDFTVADINIHKGKAVELCVLNHYADCPQQSQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGIILIDVKTQRYFNYIPLPAEAMRGRRVDKYNPDPARSVSINIAGDITLVCIDDNAAAGGRNNSSAGSAFIKSWCLVDIHESRWIRYFTMEAGKFWDICSAANQPLLPHAPPTFPLVSMANPFAISFLLYDKANNFLLGDKGNGLYWMIEVDMRNQALLSPATLYISEEEEAEFLLPPATFFINGKEEDDERYLPMKYFYGHNFIPSWFPSYLKGGDTTSRMRSLMMQQAKQESAIEKIGREMMQKEKQERAMQKNGLEMGSNSWELSKMKGKQQMATESRGMEAHLSRPLAGLKIA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0018630 | OsLima_12g0018630.01 | Chr12 | 23376738 | 23379604 | - | NAM | ||
| CDS seq | atggaagcgccgtcggcaaaacctagatctcgccgtgccacgcatggatatatggtcctggaccgcatagtccgttgctggagcggagttggaggggacgacgaccccacggcgtcggagatcgcctacacctgcagcggccaccccatccgcgtctccctccgcgtcgccgaccccccCgccgtctcccgcctctacgtccaccgccccggctggccgcgcgtctacgacctgggcgacgccgaggtcatcgccgcccaccgcggctccatcctcctctcggcgcgcgtccctttcgccgacctcgacaccatcgcgccgggccaattccccctggactacttcgtctacacggccaggcccggcgaggggttgcggccgtcgctcacgcggctgcccccttgcttcatcggcggattctcctcccccgaggtcgaccgccacttcaagccgcaccggtgccagcagcagcgggtcatggtagagcagaacgtcggcttcttctgccactccgatgacgccggcgatttcaccgtggcggacatcaacatccataagggtaaggccgtcgagctctgcgtcctcaaccactatgctgattgcccccaacaatcccaatggaaggtccagatcctggagatgcagcagcaacccaaccaaaaccaccacctcagaggttggtggaccgacgccgttcttcccctgcacgacagctacctcgcctgcgtcgactgctaccatggcatcatcctcatcgacgtcaagacccagcgttacttcaactacataccgctgccggcagaggcgatgcgtggccgccgcgttgacaagtacaaccctgatccagctcgttctgtctccatcaacatcgctggcgatatcacgcttgtctgcatagatgacaatgccgcagcaggaggccgcaacaacagctctgctggctctgctttcatcaagtcatggtgtctggtcgacatccacgaaagtagatggattcgttatttcaccatggaagccggcaagttctgggatatttgctctgccgcaaaccAGCccctccttccacatgcgccgcctactttccccCtggtgagcatggctaatccatttgccatctccttcctcctcTACgacaaggccaacaacttcctcctcggggacaagggcaatggcctttactggatgattgaggtggacatgagaaaccaagccctgctgtcaccagccaccctctacatcagtgaagaagaagaagcggaattcctgctgccaccagccaccttcttcatcaatggaaaagaagaagatgatgagagatacctgcccatgaaatatttttatggccataacttcatccccagctggttcccctcttatttgaaaggtggcgacaccacaagtcggatgcggagtttaatgatgcagcaggcaaaacaagaaagtgcaatcgaaaagattggacgtgaaatgatgcagaaggaaaaacaagagagagcaatgcaaaagaatggattggagatgggatcgaatagttgggaactaagcaaaatgaagggaaaacaacagatggcaacggaaagtagaggaatggaggctcacttgagcaggccgcttgctggattgaagattgcttaa
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| Protein seq | MEAPSAKPRSRRATHGYMVLDRIVRCWSGVGGDDDPTASEIAYTCSGHPIRVSLRVADPPAVSRLYVHRPGWPRVYDLGDAEVIAAHRGSILLSARVPFADLDTIAPGQFPLDYFVYTARPGEGLRPSLTRLPPCFIGGFSSPEVDRHFKPHRCQQQRVMVEQNVGFFCHSDDAGDFTVADINIHKGKAVELCVLNHYADCPQQSQWKVQILEMQQQPNQNHHLRGWWTDAVLPLHDSYLACVDCYHGIILIDVKTQRYFNYIPLPAEAMRGRRVDKYNPDPARSVSINIAGDITLVCIDDNAAAGGRNNSSAGSAFIKSWCLVDIHESRWIRYFTMEAGKFWDICSAANQPLLPHAPPTFPLVSMANPFAISFLLYDKANNFLLGDKGNGLYWMIEVDMRNQALLSPATLYISEEEEAEFLLPPATFFINGKEEDDERYLPMKYFYGHNFIPSWFPSYLKGGDTTSRMRSLMMQQAKQESAIEKIGREMMQKEKQERAMQKNGLEMGSNSWELSKMKGKQQMATESRGMEAHLSRPLAGLKIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.656466 | 1.014294 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0590400 | SBH | 0.872714 | 1.901182 | 3.056492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39970 | RBH | 0.603613 | 1.191380 | 0.785979 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0590400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019150 | RBH | 4.263694 | 100.507820 | 54.866665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019260 | RBH | 1.562910 | 17.454805 | 24.424519 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019620 | RBH | 1.262627 | 5.596562 | 7.283526 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018940 | RBH | 0.193757 | 0.290220 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018520 | RBH | 27.729864 | 71.905548 | 127.684120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0328800 | RBH | 24.1097945 | 140.7298125 | 140.7629055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018390 | RBH | 1.498164 | 3.473628 | 10.410601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0358400 | RBH | 29.320647 | 188.200676 | 113.7657585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018860 | RBH | 2.317804 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018780 | RBH | 42.168930 | 67.187645 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018810 | RBH | 2.438289 | 0.0 | 9.924429 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018990 | RBH | 2.067803 | 24.150408 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018650 | RBH | 1.729271 | 15.781309 | 22.315887 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018350 | RBH | 4.558347 | 73.508881 | 42.782513 |
