Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0018390 | OGI:12063370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:23174906-23178901 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagtggtagtgaggggaaaacctccacgatttctcgcgccgccgccgccgccgccgtttggctgagcacctcgccgccggcgctattCcccaccggggaaacctcgccggcgtgtctgtggagatttctgctgcgagggaagcttcttcgtcgactccgccggtgcggttgcggttcaggagctcgccgagcggcggcggcggcgatgagggaggcggtgacggtgcaGGTCggcggcttcgccaactacgtcggctcccacttctggaacttccaggtgagtcgcCCTctctctctctctctctctcgtgtccggcaagacccccagcttgttgctccacctggtgcaagaacctgacgcttcttggggtcttcttcttcttcttcttcttcttcttctccaggatgagttgctcgggctcgccgacgaccccgacgccgatccggtcttcaagaacgccgcgctggacatggacgtcctctaCcgctccggcgagacgcaccaggtaaagccgccgctcatcgctggcatgacaaaatgcgtcgtttcttttctttctgtatttgtttCtcttttttttttttttggcgttgttgttcatcttttactgactactagtatacactgcttgatttcactagggtgttgctacctactgccctcgtctggtgtctgttggttctcgaggtaatttgatgctgaaTttggtccgaatattattgtagtgcgtaaaaccccatgtttagcattcaacttataagcataaacgaaaattttgaatcttaaaacttaatttcagggttgattatggggtttttttttttcatcatggtttattttccagcattttgttttaaatcagtaagaacacgtatttaaatttttttacccataaatgattttctaatcgctaccagtccatttcacttataataagtatataagcgaaacgatgaggaaataagaactaagaactgttattttgttattggtagtgtatatactgcatgttcacggtggtatcatttgcagggtctcttggctctttgagttcatccggtaatctcggtcagtctagtactgctgcagatcaactcaatgttgctacatggcaagtggcgctctaacttctttagaatatgttttcatgtttggttttgcttattgtgcccaccatgaataattgaccactgtgatttggcatgtacaacctgcgcagaaggcggctgttgtttcagtttagttttggattgcttgtgcgaatgggttacagatgtgctaggatcgtttaaataagcttgcatatctataactgggggtaattctgacaaatggtgaaatcatgtcaagcagatagcaaatacaacagctttactatagcactgttatattgatacagttctaggaaatttctgcagcctgagcaaacaatgagctgttcttaggctgataataagagagtaataaactggtaataatgattcatatgctcatccagctgctgtggaagtgatgcattgcatctgcctattattctcgtagagttgcattcatcttttgccttactgttgcttgttttgcactgctatgtgcaaatcattcaatgtattagtaactatatatatatatgttgaataatgtgtcgggctcataggttaccatgatgaattttccttgtttatgtaggtctggaaatgtaacaagatcagtctcaaaacctcatgggcggaactTGtttctgcaaagcttagttgaagaagggcagaatccaagcactagcaatggtggctgcaactcccagaaaagtgttgaagataaggacctgattgaatgcctagagaatggcgtcaacttttggacagattattcaaaagttcactatcatcctcagagtttgtatgagttatatggatcatggacagactttgacaagttcgataactatggcagcgcacaagaggttgtttcagactggtcgcaaatagaggaaatgaatgagcggctaaggttctttgttgaagaatgtgaccatattcaggtcctacccttttttccccagtaaattatcagcaaactctacttacagttttgcaacaagctaacgttcacttatgcaatcatttttgccatcatgcatattatttagaccattattttaagcttaattgattcataatttaccacagggcatccaatttattgtggatgattcaggaggtttttccagtgtagctgcacagtttttggagaacattgctgatgattacacaaatacacttgtattgctttactgtgtgagggatccaatgacccttggaccatccaggaggaatcaaagggagtccattatgagagctcttcatgatgctgtttcattttcaaaactttcgtccttttgcaacctgatggtacccataggaccgccttcattaagtagaagtatactatcctttgcctgaactccacatttttagtttatcttttgttattgttattctgtgattttataggacttctttctggttgcctagttttgcctttgattgcttcaagtatactgatgttgtgccttaagatactgcacttgattgcgtttctattaaatatcaactccttttgttcaagctgtatattcacatttgatttccatacaatattactttcatgaattcccttaaaaaaatactttcatgaatatacagaaagcttattctgaatgagattttctcacaaatttcctttcactctgtttcatcaggttgcatgtcaccgtacctttatatacaagatgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaatCActgttccatttagattgcaacgaacgggaccgagttcagacttagcacattcatctggtaatcttgacattggcgaacttgtgcacaTtttatctgatcaaggtcggcagaacatggttactgctctggatgtagcgatgcctgccccttctttgacaggtatacaacataacatatgccctactgttataccaacattggatggaaatttaatcttgcttgctaattgcacactttaatttgcagatagagatgctatggggaacatagagatgaagctgcactctttgacccctgaaatcagcgatgaggacgaagatccttattcagttgaatcgctagtggttcatggagctcttgatagaggtctgcacatcttatcttttgccttaggatctgattaactcctattatttgtcatgccaacagaacttatttttctattgttgttaatacttacaatattgaacatttaacaacattataggcatggtggctaaattttggttatacatgtagaagtacaaagaattaacaattgaaatttgtttgcacaggcgggcaaaggacttccatatcacaagtgaaggactcggtatgttcagtctacgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtCccccttccgttcccgtcaatcttcagaggcaacattggccggcacggggagatccttagtgaccatgcagaagaatcccagccaaagggctcactcgacatcgaatcgataccaatggcggcacggttacgatcaagcagcgccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcgagaggcgccatcgggtctctggtcctccacgactggggcttcgggagggaggaggtggaggacatgggggagcacctagcgaagttgctctgcccgtttcaccctgaaatggatcttacttcggattccgactagatcatcttcgaaaaatcttacttcgagaatcaagcatgatccaTCtgttgcaatttatgtggattgtagtaatactaaatctttttttttcagagggttttcagatactgaaaattcatgctcaTgtggctggctgttgtgagatc
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| CDS seq | atgagttgctcgggctcgccgacgaccccgacgccgatccggtcttcaagaacgccgcgctggacatggacgtcctctaCcgctccggcgagacgcaccaggtctggaaatgtaacaagatcagtctcaaaacctcatgggcggaactTGtttctgcaaagcttagttgaagaagggcagaatccaagcactagcaatggtggctgcaactcccagaaaagtgttgaagataaggacctgattgaatgcctagagaatggcgtcaacttttggacagattattcaaaagttcactatcatcctcagagtttgtatgagttatatggatcatggacagactttgacaagttcgataactatggcagcgcacaagaggttgtttcagactggtcgcaaatagaggaaatgaatgagcggctaaggttctttgttgaagaatgtgaccatattcagggcatccaatttattgtggatgattcaggaggtttttccagtgtagctgcacagtttttggagaacattgctgatgattacacaaatacacttgtattgctttactgtgtgagggatccaatgacccttggaccatccaggaggaatcaaagggagtccattatgagagctcttcatgatgctgtttcattttcaaaactttcgtccttttgcaacctgatggtacccataggaccgccttcattaagtagaagttgcatgtcaccgtacctttatatacaagatgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaatCActgttccatttagattgcaacgaacgggaccgagttcagacttagcacattcatctggtaatcttgacattggcgaacttgtgcacaTtttatctgatcaaggtcggcagaacatggttactgctctggatgtagcgatgcctgccccttctttgacagatagagatgctatggggaacatagagatgaagctgcactctttgacccctgaaatcagcgatgaggacgaagatccttattcagttgaatcgctagtggttcatggagctcttgatagaggcgggcaaaggacttccatatcacaagtgaaggactcggtatgttcagtctacgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtCccccttccgttcccgtcaatcttcagaggcaacattggccggcacggggagatccttagtgaccatgcagaagaatcccagccaaagggctcactcgacatcgaatcgataccaatggcggcacggttacgatcaagcagcgccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcgagaggcgccatcgggtctctggtcctccacgactggggcttcgggagggaggaggtggaggacatgggggagcacctagcgaagttgctctgcccgtttcaccctgaaatggatcttacttcggattccgactag
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| Protein seq | MSCSGSPTTPTPIRSSRTPRWTWTSSTAPARRTRSGNVTRSVSKPHGRNLFLQSLVEEGQNPSTSNGGCNSQKSVEDKDLIECLENGVNFWTDYSKVHYHPQSLYELYGSWTDFDKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENIADDYTNTLVLLYCVRDPMTLGPSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPSLSRSCMSPYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELVHILSDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGALDRGGQRTSISQVKDSVCSVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLHDWGFGREEVEDMGEHLAKLLCPFHPEMDLTSDSD |
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| Function | Protein misato homolog 1 [UniProtKB/Swiss-Prot:Q2YDW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0018390 | OsLima_12g0018390.01 | Chr12 | 23175312 | 23178871 | + | NAM | ||
| CDS seq | atgagttgctcgggctcgccgacgaccccgacgccgatccggtcttcaagaacgccgcgctggacatggacgtcctctaCcgctccggcgagacgcaccaggtctggaaatgtaacaagatcagtctcaaaacctcatgggcggaactTGtttctgcaaagcttagttgaagaagggcagaatccaagcactagcaatggtggctgcaactcccagaaaagtgttgaagataaggacctgattgaatgcctagagaatggcgtcaacttttggacagattattcaaaagttcactatcatcctcagagtttgtatgagttatatggatcatggacagactttgacaagttcgataactatggcagcgcacaagaggttgtttcagactggtcgcaaatagaggaaatgaatgagcggctaaggttctttgttgaagaatgtgaccatattcagggcatccaatttattgtggatgattcaggaggtttttccagtgtagctgcacagtttttggagaacattgctgatgattacacaaatacacttgtattgctttactgtgtgagggatccaatgacccttggaccatccaggaggaatcaaagggagtccattatgagagctcttcatgatgctgtttcattttcaaaactttcgtccttttgcaacctgatggtacccataggaccgccttcattaagtagaagttgcatgtcaccgtacctttatatacaagatgagaaaccattccatgctagtgctgtttgtgctgcagcaatacattcaatCActgttccatttagattgcaacgaacgggaccgagttcagacttagcacattcatctggtaatcttgacattggcgaacttgtgcacaTtttatctgatcaaggtcggcagaacatggttactgctctggatgtagcgatgcctgccccttctttgacagatagagatgctatggggaacatagagatgaagctgcactctttgacccctgaaatcagcgatgaggacgaagatccttattcagttgaatcgctagtggttcatggagctcttgatagaggcgggcaaaggacttccatatcacaagtgaaggactcggtatgttcagtctacgaagccagagagacaaagccaaaattttcccatctctcagcatctctttgccccctccctgtCccccttccgttcccgtcaatcttcagaggcaacattggccggcacggggagatccttagtgaccatgcagaagaatcccagccaaagggctcactcgacatcgaatcgataccaatggcggcacggttacgatcaagcagcgccgtcctgcctttcatagagaggcgatcggggagcctccagaagcacggtgtcgcgagaggcgccatcgggtctctggtcctccacgactggggcttcgggagggaggaggtggaggacatgggggagcacctagcgaagttgctctgcccgtttcaccctgaaatggatcttacttcggattccgactag
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| Protein seq | MSCSGSPTTPTPIRSSRTPRWTWTSSTAPARRTRSGNVTRSVSKPHGRNLFLQSLVEEGQNPSTSNGGCNSQKSVEDKDLIECLENGVNFWTDYSKVHYHPQSLYELYGSWTDFDKFDNYGSAQEVVSDWSQIEEMNERLRFFVEECDHIQGIQFIVDDSGGFSSVAAQFLENIADDYTNTLVLLYCVRDPMTLGPSRRNQRESIMRALHDAVSFSKLSSFCNLMVPIGPPSLSRSCMSPYLYIQDEKPFHASAVCAAAIHSITVPFRLQRTGPSSDLAHSSGNLDIGELVHILSDQGRQNMVTALDVAMPAPSLTDRDAMGNIEMKLHSLTPEISDEDEDPYSVESLVVHGALDRGGQRTSISQVKDSVCSVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNIGRHGEILSDHAEESQPKGSLDIESIPMAARLRSSSAVLPFIERRSGSLQKHGVARGAIGSLVLHDWGFGREEVEDMGEHLAKLLCPFHPEMDLTSDSD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0018390 | OsLima_12g0018390.02 | Chr12 | 23174906 | 23178901 | + | IsoSeq | ||
| CDS seq | atggcgtcaacttttggacagattattcaaaagttcactatcatcctcagagtttgtatgagttatatggatcatggacagactttgacaagttcgataactatggcagcgcacaagaggttgtttcagactggtcgc |
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| Protein seq | MASTFGQIIQKFTIILRVCMSYMDHGQTLTSSITMAAHKRLFQTGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.119517 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0586400 | RBH | 0.600400 | 1.017174 | 0.544142 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g39650 | RBH | 0.392858 | 0.661953 | 0.154033 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0586400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018930 | RBH | 0.190547 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019040 | RBH | 0.000000 | 0.513827 | 0.999463 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019390 | RBH | 0.218211 | 3.623060 | 4.658360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018710 | RBH | 0.036609 | 0.121000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018310 | RBH | 2.176375 | 0.000000 | 3.376231 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0325500 | RBH | 3.5279945 | 11.512996 | 10.249467 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018180 | RBH | 0.150319 | 0.330036 | 0.498760 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0355000 | RBH | 3.5246575 | 10.3234145 | 12.8228445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018650 | RBH | 0.176318 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0018590 | RBH | 0.494444 | 0.0 | 0.191958 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018770 | RBH | 0.070120 | 3.636202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018460 | RBH | 0.222241 | 2.238351 | 0.340408 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018160 | RBH | 0.727679 | 0.000000 | 1.887317 |
