Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0017240 | OGI:12060770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:22077567-22085650 | ||||||||
| Gene Symbol | MTI4B, MT1Ld, OsMT1Ld, OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc | ||||||||||
| DNA seq | atacacaagtaaaccatagtatattttcagaaccaaacgctcagatgagatagcgacacaaacgtaatgtagcctgaaaacttcaggtgccccaaatcacaaatggccatatcatagcctctaagattcagacaagaacacaaaggggacacctcacaagattcacagtccacattagtacatcaggatgaacaacaagctgacacacacacactggagccattgcacaccaaatggcttctttatttacttgtacagatcatcagcatgataaccttccccttcagcagttgcaggggttgcacttgcagctggagccacagctgcagccatgggcagcctcaccagattcagctgccttgccaaccatcacctcaaagtgcctgcatatcaacaaggcaaattcagaaacgaacagtttcaggcatggaaagatgtagatcacagcatattgttcatgtctgaaactcaggtaggattttttttcttcttctgtttacTttttgatcggggaaaagattcagagatatcataccccttctcaggtgcaacgccgaggacagtggttgcagtagtggtggtggtggtgatcttctcagccaggtcagggtacatctttctgaaccaagaaaaaaaaacagaacactaaattcagtaactagaaatgacaacTttttttttgtcttatggatggcttcatctgaATataacttcaaatcaattgtaagcagaaacattggggctaacatagtattcttctatcatggaaagtacatcaaaatcatcaaaccttgtgacagtttatgttgacaaatacatagcaaacatattcagaatcagtagctgaagattgaaagtacccgcagccaccaccgcatccgcaggaaccgcagttgcaacttccaccgcacgacatcttgaacttctgggtctcttgtaaactcttcaggaacttgtgtagttggatgaaatgagagattgaaagtttgatatgaactcagttcagatatgccctcctatttatagtagtagtacccttgagaaaaagctgcggaattatgtcaagcattatcttgccagaaagatgtagctggttgaaatggccttgaaaaatcattatcattcattgacgtcagttttctatatgcatttcttggagttttaaaaaagcatatttgtttggggtgcaattgtgtcattcctagttgaatatagtattgataagtgccgaaaaatataaaaatattgacgaTttttatgtagttgcttacgcaccacggttgcattattttaattactgttaatctgaaccaagtttctgggcaaatgtaatccaagttttggccaggttcaaatttgctttcacaccatgatgtcaacctttgcttaagatagacgaattgttgctcatatttaaagcaaacaatctgaatttgtatgaactggatttaaactttcatcacgaaaaacagaatttgataaagttcttagctgtttcaatcttgcatctgtactatgatgcagactctttgcttaagatagatgcattattgcacagcttgaaattgaatacgtttcttgtacgagttgaattcaaatttcttgcttgaaccacgctggattagattaaattccccaaaagtcaaacttataccagttccaccccaaaaggcacactcatcatcgtgcaaatgtcaatttgaatgagctaagagtatgaattgaaatatgcaaattcagatttcttgcaagaattgaattcagtggtttacacgaattgaaataTaaaactgatgtgtcttatattttttgaacttaagtttatcatacgccaagaattcaaatccctcaagctactgaccaaatcatccctccttcaaatccatggcgcgagctacaccagacacgtacttaaacttatcttgtacacatcgaattctattaacttgctgtacgaattcaatttaaatttaatgcatgagctagactgcatttgagtttgatgattctatgaccaaatcaaacctgctctgaacatgttcatgtattaactaaatttgaaatacgttgcctttaatcaaacaactaaatacacatcactgaagtagtcgatcggatcatcttcttcacgaatacatatacctcactgaatttgaagtattgttgggatcgatatcgcacggcatcgtattagggcacccgcaatggttatccataggctctctacaagagattcatgtcagcatattttcttacttggaagagattaaatgaagagagagagcaaagctatctactaatctggagatagtctatagaaaaaaacgagacaatggattagagagctatagatacccatgtagacataccattgaagtggtttactattaatttagtctattgctgagatgtacatgttttatagatagcaccttactttaccattgcGTgtgctctcagggtttacaatttcggatctaaatttccgaaatttcgttattaccagtgggtgtctgtaggaggttcttccggacggattttttttaatttagcacacaaaatcaaatttagtaatttttttttaagacaacctcaaaaaggatagggagtgcctattttgagacttggcccagttttttaggggaaaccggatccaaaaccctcacataagcacggtttgttgtggaaaactaggctaaatccacatgaagaacaaactaaaaacttgcaacgatacaactggaggttaaaacacaggtcatcgttgcctagctcaaaagaacagctccgacttcttatgaacagaccacagacaacgtaaggcagtgtcttcaagacaaagtctccaaggaggaagatagcattgaaacgcaaacaacgtccgtctgaaaatcggaacaaggttttcacccgaagaaacggagagagcaaagtaatgatgccttcaagaaggaaaacgacacccacaagcgtcgacatcgttgactctagcccaagatcgagtaggacattcgcgccagctctctctccctgccaactacgacaaccctagctaccacagcgctaccaagacgaaagcgggagagggttatcTttgccgagcttgccacccttcaaatttagtaattttcaatgttattcatttgaactttctgatatttcggaattttggtccctctggtaggtttcctgatggtagtgtgaaaaatcaattagcaagaagggagagacggggcgtgtggggcgaggtggacctatcacggatctagagctggtcgaccatggctgccatcaccatgcgcatcttgtcctcctccaggaggccgtcgaggtcgctaagcatgttcttgtctatcgctgccgccgccgggggaggaggaggaaggctagggttttggggttcggggaggagaggagaggagaggagaggagtcgagatctaaaaccttgggaaagaaattccttttaTtttcttttgggaaaagtccactttgagtcccttaaaagtaggccaaatctaattcgtacccctcaactagaaaccatataggacgactccccgaactattaaaaccagttcaatttgactcctatagcagttttgaagggcggttttgcatatgtagcgctgacatggcagtgttgacctggtcttcatcccAcgtggtgcttatgtggcattagaattgaaaaaattatgtggggcccatctgtcattcatacacaaaATatatttgggacccacatgtagtttttacatcgccatgtcagcaaaactgccgtccaaacccactgagagagtcaaattgcactggtttgaacagttcggggagtcatcctatccggttttacggttgagtgtcacggaatatattcgggttacttttaagggaatcaaagtggacttattccttttccttttggaaaaagtgcactgaaggtccctcaacttgtcatcgggatataaaatcgtccttgaaccgcaaaaccagatatgcagggttccttacctatataaaaccggtcacccaaggtccttaagtggttttgaccccggttttagtctacgtggcggatgagtcagcgtggacccacgtgggccccacgtgtcaggtgttcacgtcaccctctctctttcccctcttctctcccttcctcaTCTCtctctctctctctcTCTCATACTTCTGGGCAAGCTGGCTGGGATGAGGCGGGAGGGCAGCGCCGCGACGGCCGCCGGCGGAGGCGGCGTGCGAGCGTGGTGTGGCCGGTGTGGTGACTGTGGCCGGCCGGAAGGATGGAGACGGTGGTGGTGGTGGAGGGGGAAGCAGCGGGGGGAGTTCTTGGAGCTCTGGATGGggggtggggctggggcactgacaacggcggtggcgggagcattggcggcggaggaggtggcggcggaggaggtggcggtggcggtggtagcggtggaagaaggtgctggtggggatgcggcaatggtagacggcgccacaaaggtggcaaagaaggcggcggcggcggcggcgagggcggagcgggaaaaggacggcgatggcagtggtggcgtggggatgaggagcgtgcggcgggggaggaggcacgggcagcgaccgagctacaactcgagtctgtaccgggtggggtagtacgcgcggtgcacggcggcgggtacgtcacgttcgcacgccgcctccgccggcggccgtcgcggcgccgccctcccgcctcacccgggccgtcgcggcgacgcggcttgaccggcggtggactacctcgacatggaggcgcagctactgaggaggttcccggagtgggaggggaacggtgtcgccgacgtgccgttcgagttgtacacatcgtcgcaattcacacgcaagaacacacagtacgcacgagcgtgttcggtaatcacatgaaacaaggagaaagacagtgggtatgatcgatgcgtaagataccttcctgggaggcgccgtccacggtgctcccggactggtgcccatggtggcggccgccgagcgacatcaggcggccgcgctcggctcgcagcgcggcgcggaggccgaaccgctcgccgaggagcaggtcccagcggaacagcccggcgagcgcggccatcatgtcgtcgagctcgcgctccgtcatggccaggagcgtgctcgctgtgaacccgagctccgagattcgcgccaccgttgacatccgcacgccgtaccctgccaccagctcctccagctctctgggcacgttagccagcggcggcggcggtggcggcgggggcacgggcgccggcgccggcgggccgaggtcccaccggaacgggtgcgcggccgagaaggcatcgttgggatccatgcgaggatggctagctactagcttgctgtccttgcggtcggccgggctcggtttcttcggttgtttcttgtgtttcgcacacacctatgtgcgtcgcgttgggctcgttatggagagggacaagagcaacgcatgcagggacaggagctccgactccggcagcgatggcaactcgctgtgtggagatgacagcgtcagcggcgggtccagcacgacgacgacagcgacggacgcgtcggcgtcggcgtcgagccggccgctgcttgaccagagaggcagcacgaggtcgtcgccgccgccaaggcaggcaagtgtcgcagcggcattgttactcttactcgtctaaagccttccaagattacagctagctccatgtccatgacgtgtgcaGggccgccgcagaagtcgagattgatgggcacggtgaggccgccgctccgctccgccagccgccgccgctgccgccttgCTcccctgccgagagagcctcggagagaagagtaatcgagagagagagaatgaggaagAAaaagaaaaggggaaagagagagagacgtggacacgctgatatgtggggtccacgtggattttatgctgactcatccgccAcataggctaaaaccggatcaaaactgggaccttttatgaccggttttaattagttaagagatatgagatatctggttttacgatttgaggacgattttgtatctcgatgataagttgagggcccttgggtgtactttttcctttcctttttgatgtaatttaatgggtttgttttaattggagggccctatgggcttcgaaattaagcccagtatcagagtttgaggcccatttgggatggaattccacaaggttgtgtataactcaatgaattattgcaaaccaaaaaaaaagaaaaattaatatcatagaatggtgagagttttttttagataatggaatagtcatcccggcctttgctcaaagagagctacatcccattattacaatctagcactctaaaacgagtgtagttcagaaatgatagaaaaaatgaccacacaaaggtaaatttaaccaaaacaagatcagaagaacacattatataagtctatttgtaaatctccatccataattggcaaaaagctgcataaccatcgtctcaagcttacgacatgcagcttttaaaagctcaccgtcttcatcacacctttgtagttgtgctcaaaaccgaagctaatagattgccctgaaaatttcctgcatatatgtaacagatggtgatttgttaaaaaccatatcattcctacacaaccatagagcccaacaaattacagaagctcccaccaatattaatttactctttttcttgtccacccccaacagtcacccaTaaaaaatatgagatatgttaataggggggtatagaccaaaagagaactgcacagtctccataaaaactttgcataatgacaatccataaaaagatgttgtattgactaattctttatacagaaacaacatcttaagctaacattccaattccgtcttgctaaattatccttagtcaacaccacccctttaaacaggtaccacataaaaaccttaatcttaagtggcatcttaagtttctaaattatcttatttctttcaatataaccattataaatcaaagctagatacatagaccttacagagaaccgtccattctgattaaagttccatgaaaaacaatcagaagagtaaaattcataaacaaaccaatatttatatttcacagagtaagagtaaaattcatagacaaaccaatatttatatttcacaaacaacatttacataaagccagaaaccacatggatttccagccacggacttttgacacctgattcacacatggttgagacaaACacacacacacaggcatgagccatcacactggatggactctttatttattcatcatgtagacaggctggtgcattggcaattcagtcatagatcatcttggccttagcagttgcaggggttgcacttgcagctggagccacagctgcagccatgggcagcctcaccagactcacctgccttgccaaccatcacctcaaaatgcctgcaaagaaacaagccaaattcagcaaataagagtttcaggcatgaagctcaatcaggattttcttctggttagcttttctgggcaaagattcttcgatatcattcataccccttctcaggtgcaacaccgaggacagtggttgcagtagtgatggtggtgttgatcttctcagccaggtcagggtacatctttctgaaccaagaaaaacatagtagaaacaatgaaattcagtaaccagaaatgaaaaatctcttgtcctcttatggatggcttcatctgaatataacttcagataaatggggaagcagaaacataggagcagcaatagtatgattttcaacatgcgaaacataccaaaatcactcaaaataaatgggtgctatgtctgaaagtttgtgtcagtttagcttgaatgaccatgtatataggcaacatattttcagattcagaatcagtaactgaagcctgaagagcatacatacccacagccaccgccgcagccgcaagaaccgcagttgcaacttccaccgcacgacatcttgatcttctgggtctcttgtaaactcttcaggaacttgtatgcaatgagagattgaaagcttgatatgaactcagtgcagat
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| CDS seq | atgtcgtgcggtggaagttgcaactgcggttcttgcggctgcggcggtggctgtggaaagatgtaccctgacctggctgagaagatcaacaccaccatcactactgcaaccactgtcctcggtgttgcacctgagaaggggcattttgaggtgatggttggcaaggcaggtgagtctggtgaggctgcccatggctgcagctgtggctccagctgcaagtgcaacccctgcaactgctaa |
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKINTTITTATTVLGVAPEKGHFEVMVGKAGESGEAAHGCSCGSSCKCNPCNC |
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| Function | Metallothionein-like protein 4B [UniProtKB/Swiss-Prot:Q2QNE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0017240 | OsLima_12g0017240.01 | Chr12 | 22084710 | 22085650 | - | NAM | ||
| CDS seq | atgtcgtgcggtggaagttgcaactgcggttcttgcggctgcggcggtggctgtggaaagatgtaccctgacctggctgagaagatcaacaccaccatcactactgcaaccactgtcctcggtgttgcacctgagaaggggcattttgaggtgatggttggcaaggcaggtgagtctggtgaggctgcccatggctgcagctgtggctccagctgcaagtgcaacccctgcaactgctaa
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKINTTITTATTVLGVAPEKGHFEVMVGKAGESGEAAHGCSCGSSCKCNPCNC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0017240 | OsLima_12g0017240.02 | Chr12 | 22077567 | 22078559 | - | NAM | ||
| CDS seq | atgtcgtgcggtggaagttgcaactgcggttcctgcggatgcggtggtggctgcggaaagatgtaccctgacctggctgagaagatcaccaccaccaccactactgcaaccactgtcctcggcgttgcacctgagaaggggcactttgaggtgatggttggcaaggcagctgaatctggtgaggctgcccatggctgcagctgtggctccagctgcaagtgcaacccctgcaactgctga
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGVAPEKGHFEVMVGKAAESGEAAHGCSCGSSCKCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 21.447367 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0568500 | RBH | 0.0 | 0.0 | 1.175378 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38051 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0568500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017750 | RBH | 0.0 | 972.047729 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017870 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018430 | SBH | 8.020730 | 469.894287 | 4.541850 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017570 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017160 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0309500 | RBH | 0.0146465 | 445.891617 | 0.0303745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017190 | SBH | 1.500923 | 58.490971 | 3.567671 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342500 | SBH | 237.72081 | 89.094791 | 4.691232 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017260 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017530 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017440 | RBH | 0.0 | 1001.730408 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017630 | RBH | 0.0 | 225.278183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017410 | RBH | 0.0 | 1.020206 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017070 | RBH | 0.0 | 276.367401 | 0.0 |
