Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0016430 | OGI:12058760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:21324270-21328774 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccataatctgtacaacaataacaacaacaattattctgtacaccagccaatgctacaatgatcccaatctgtggtcgtcatcgatgccgtcctcctcctcggcgacgagcttgtcgatcaacagctccattgtcctgatgtacttgggcatgtaatgctcccttatcatggatctcgccaagcgaatcttgctgtaaagatgtcgaggtgtctcatacaaggcaacgacctcctcaccttgttcacttgtactgtttggctctgatgatgatggcaatccaaccatgtgcattattcttcctggagggtagagctgggggggatcttgactttggctcgacgacgatgacggctcgtgtgggttgtcggtcaaggtttctagaagctccacggcctgatcttcgtctgtttcattgagagctggctcattctcccctctgtcggtatcatcgtcattatctgattcttgaaggtcaagttcttccatggaaattgagactagttgtgccgtttcgatgtcagttttctcagctttgacattgacatcagtttgatttgtgatgtcatgagttccatgttttgcagagtcaatggaatgcttatgtgcagcaacacatgaccagcaagctattgcatggcgtttcttcaccacagcatctgaatttgacgaaggcttcacctgatcagcctgccaaataatcatgaatcaactatttaggtgacaagtatgattagcttgttcgaagaactggtgtttgcaacaatctagctgccatacctcagagctgttgggcaccagcatgtcaacatctacaaccttggatcttggatcagagacgaatggcacgtgcgatcggatgaagctcacagagcgattgacaaagcccaagaatctggtctgctgaatttgctcacgaaggtcatgtacccaggatgatgccatgacctgtcatcaatgaccgcgacggtaaatatgttgcaatgattatcttttactagctgccaagaactgtttgcagggaagaatttataaatgatatgctctaaagaactgcatctgcgatacagttcttggttcccgttttgatcgtcatacttaggaatctgctcatgaattcaggtagctgagaggtacctctgtacggagcttggcagcagaaactttgccaaaagatggaactaggtcatttctgttgacaatggttgtgatgaagtctttacccgactcagccaagtcccatgtcatgcaagcagctgaacagaaatagtaggacagggagcattactatctcacatcaagtatttctacatcataattttgtagaatcaaaagaagaacatggagttattctacttattctacagatgtatatgtacattgcgatcgattggacatgtaatctttgtccaaaaaaaattgaatatgtaaaaatcataagatccttcaaacatttgttcattgctgaatagttaaagctagaattttttataacaattaattaatagcttttaaattgtaggcgtgcaaatgccattccatgagactatattggtgtgtaaggtgctaatatggccttttagtgaaatatattttcttatgttaagaatgcaattccaaggtccgtgaacaatggtaaactagttgcttgtgctccatgatgcatacctggtccaaatgcaagacatgtggatgatgataacttctcattctcacgcagaatgtatgctaatattgcagcgatgccagcacccattgaatgcccaatgatctaaaatatataacaacagaaatgctgtgatttgagtaagcaaacaaaaatgatcagatgtagtgcacagtgttcatcatcttgtaccacgagaaaacttgattacaatgaatgcaactacattgagattgttaaaaaaaggctacataggtttgtgtagactgcacactttctctaaataaagtataatggtcgtttggataataaataaatacacgatgtatgccaataagcaaaatacgcaataacagttttactagtttgtgaaacaaaattcgtagttattagtctaaattgttgagcttctaagtgctgtttccactttgtccctttgtgctagactactaggcacaacttttagcttacttttggactaactatgctcgcttctgaattgtctttctcagcactagagaatcctaggaagtccataaaagatgcatagtaagagtacttgaaagtctttctcactttgacttcaaggtaaggaataatatcttgtttctaattggttaaaactccatgtttcccatccacttgctttcttgcacatgttttggaaaattttggcgtaacttggataggaaaacatctcccttgaaccatgtttcaagataagcctagaagattactgctaaactatgatttggttttggtggcatatccctgtctaaatgagagtaagaagagaaatgttctataaactgcatcataaaagaatggtccaacttgacaactagtgggtaggctctaattgcaattaacttaaaattgcatctgtaaaggtctgggaaataaattaccttcactccataatctgggaattgcgcaaccgcttcattgaggcaaggaatggcctgatttgcaatccagcgagctgccactaccattccacaatgagcatgtcccagcaccaatttggagacatgaccatcttgtgtcacaacatgatgaaatggaacctctgctccggttgccgccgtcaaccgatccttaacgctgatcgccccccgaataaaaaggaggaagcatttcgcacttctatcgcggacaactgtgaaagaaggcttcataagctgcacaacaataacacataatttcaatcaatttgtccaggttttgtatatgtactaaaattaaagaagtccgtttatatccaacaacacaaagtcgattgatacttacgcaccctcgccttagatttctttataagaacatcgctttcgtcatatccaccgaactccatgaacactttgtatggtttctttgagaaatacatgcatagcttaaggtatcctaatagtgagattagctcctcctttaccacaggcccttccaatagttgagaattgcttccagcatactcatgctgaagattaccctgaaaaaagtaaagtgaagtgttcatggccatgctaaaatatgtacttcaacaacaaaaagggctgataacaacgcggcgaagacaatggagtaaattgtttattgaatgtagaatactttgagcagccaagcaactatcatcttttcccaaagttagttatcacctatcgggttcagacctaactatatacgaagtatgaacttttgcatcgtcgagcctaaagtagctgcagtaaatttcgttattttgaaagcaaagtaggctttatacattggtgaaaattttaagagaaggctggtaacttccaagcaatggacggtagaactgcagccacagaatcacattagtctttcttaagagtcacataacgtcatgaactaatccaacaccttgctaatttttatttcttttacttcgatgcttcttaagttcttatcacacattggatatgactgggtaagacgaatatcggttttgccgccaagtcccaaatgagaaaatcaacccaaaaaaaaagctaaatataccagttattaccgcgctgtaaataactaaataccaagagaaaaaaaagagaagaaaataagtgagtaggaaaaatctattcacgcagtggttgcacattgttctctttgcttgcaagcaacaaagataagagattctgttttctctaaatccaaaaatgtgatggagatattttttgttcctcgaaaatccaagcaaaaatccaatgaagaaaaaacggcaagctttgaccgggaagaaaccaatcccctctacgcctccttccaacgaaccccaaaatcggcaaaaaaaaaataagagagaaaaaaagaaaagaaagaagcagagaaaaatctctcgcaagaacagagagcacggcaagaccgaataatctcccatggcggcgcagttagtcatagttgtgctagtattaggctattagcgatcaatcagctcgtcgtcggcggcggcggcggcggaggagggaggagggaggagcgcacctgctgccgcatgtagtacttgagcccgaaggcgatctcgccgaggggccacttgccgagcgtctcgccgtaggtgtaccgcacggtgcgcgcggccgccgccgcggcctccccccacccggcgggcgcgcgctccggccaacgccgcgctcgcgctccgcgcctcctcgcccggccggcctcctccttcctccgcctcctccgcgcctccaccgccgcggacaccgcggcggatatcgtctggtcctcgtcgccggcggcgtcgccgcagaggcggcccgacagcacgaggtacaccagcaccgccgtgcccgccgccgtcgccatcccgcccttggctcccat
More
|
||||||||||
| CDS seq | atgggagccaagggcgggatggcgacggcggcgggcacggcggtgctggtgtacctcgtgctgtcgggccgcctctgcggcgacgccgccggcgacgaggaccagacgatatccgccgcggtgtccgcggcggtggaggcgcggaggaggcggaggaaggaggaggccggccgggcgaggaggcgcggagcgcgagcgcggcgttggccggagcgcgcgcccgccgggtggggggaggccgcggcggcggccgcgcgcaccgtgcggtacacctacggcgagacgctcggcaagtggcccctcggcgagatcgccttcgggctcaagtactacatgcggcagcagggtaatcttcagcatgagtatgctggaagcaattctcaactattggaagggcctgtggtaaaggaggagctaatctcactattaggataccttaagctatgcatgtatttctcaaagaaaccatacaaagtgttcatggagttcggtggatatgacgaaagcgatgttcttataaagaaatctaaggcgaggcttatgaagccttctttcacagttgtccgcgatagaagtgcgaaatgcttcctcctttttattcggggggcgatcagcgttaaggatcggttgacggcggcaaccggagcagaggttccatttcatcatgttgtgacacaagatggtcatgtctccaaattggtgctgggacatgctcattgtggaatggtagtggcagctcgctggattgcaaatcaggccattccttgcctcaatgaagcggttgcgcaattcccagattatggagtgaagatcattgggcattcaatgggtgctggcatcgctgcaatattagcatacattctgcgtgagaatgagaagttatcatcatccacatgtcttgcatttggaccagctgcttgcatgacatgggacttggctgagtcgggtaaagacttcatcacaaccattgtcaacagaaatgacctagttccatcttttggcaaagtttctgctgccaagctccgtacagaggtcatggcatcatcctgggtacatgaccttcgtgagcaaattcagcagaccagattcttgggctttgtcaatcgctctgtgagcttcatccgatcgcacgtgccattcgtctctgatccaagatccaaggttgtagatgttgacatgctggtgcccaacagctctgaggctgatcaggtgaagccttcgtcaaattcagatgctgtggtgaagaaacgccatgcaatagcttgctggtcatgtgttgctgcacataagcattccattgactctgcaaaacatggaactcatgacatcacaaatcaaactgatgtcaatgtcaaagctgagaaaactgacatcgaaacggcacaactagtctcaatttccatggaagaacttgaccttcaagaatcagataatgacgatgataccgacagaggggagaatgagccagctctcaatgaaacagacgaagatcaggccgtggagcttctagaaaccttgaccgacaacccacacgagccgtcatcgtcgtcgagccaaagtcaagatcccccccagctctaccctccaggaagaataatgcacatggttggattgccatcatcatcagagccaaacagtacaagtgaacaaggtgaggaggtcgttgccttgtatgagacacctcgacatctttacagcaagattcgcttggcgagatccatgataagggagcattacatgcccaagtacatcaggacaatggagctgttgatcgacaagctcgtcgccgaggaggaggacggcatcgatgacgaccacagattgggatcattgtag
More
|
||||||||||
| Protein seq | MGAKGGMATAAGTAVLVYLVLSGRLCGDAAGDEDQTISAAVSAAVEARRRRRKEEAGRARRRGARARRWPERAPAGWGEAAAAAARTVRYTYGETLGKWPLGEIAFGLKYYMRQQGNLQHEYAGSNSQLLEGPVVKEELISLLGYLKLCMYFSKKPYKVFMEFGGYDESDVLIKKSKARLMKPSFTVVRDRSAKCFLLFIRGAISVKDRLTAATGAEVPFHHVVTQDGHVSKLVLGHAHCGMVVAARWIANQAIPCLNEAVAQFPDYGVKIIGHSMGAGIAAILAYILRENEKLSSSTCLAFGPAACMTWDLAESGKDFITTIVNRNDLVPSFGKVSAAKLRTEVMASSWVHDLREQIQQTRFLGFVNRSVSFIRSHVPFVSDPRSKVVDVDMLVPNSSEADQVKPSSNSDAVVKKRHAIACWSCVAAHKHSIDSAKHGTHDITNQTDVNVKAEKTDIETAQLVSISMEELDLQESDNDDDTDRGENEPALNETDEDQAVELLETLTDNPHEPSSSSSQSQDPPQLYPPGRIMHMVGLPSSSEPNSTSEQGEEVVALYETPRHLYSKIRLARSMIREHYMPKYIRTMELLIDKLVAEEEDGIDDDHRLGSL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016430 | OsLima_12g0016430.01 | Chr12 | 21324322 | 21328774 | - | NAM | ||
| CDS seq | atgggagccaagggcgggatggcgacggcggcgggcacggcggtgctggtgtacctcgtgctgtcgggccgcctctgcggcgacgccgccggcgacgaggaccagacgatatccgccgcggtgtccgcggcggtggaggcgcggaggaggcggaggaaggaggaggccggccgggcgaggaggcgcggagcgcgagcgcggcgttggccggagcgcgcgcccgccgggtggggggaggccgcggcggcggccgcgcgcaccgtgcggtacacctacggcgagacgctcggcaagtggcccctcggcgagatcgccttcgggctcaagtactacatgcggcagcagggtaatcttcagcatgagtatgctggaagcaattctcaactattggaagggcctgtggtaaaggaggagctaatctcactattaggataccttaagctatgcatgtatttctcaaagaaaccatacaaagtgttcatggagttcggtggatatgacgaaagcgatgttcttataaagaaatctaaggcgaggcttatgaagccttctttcacagttgtccgcgatagaagtgcgaaatgcttcctcctttttattcggggggcgatcagcgttaaggatcggttgacggcggcaaccggagcagaggttccatttcatcatgttgtgacacaagatggtcatgtctccaaattggtgctgggacatgctcattgtggaatggtagtggcagctcgctggattgcaaatcaggccattccttgcctcaatgaagcggttgcgcaattcccagattatggagtgaagatcattgggcattcaatgggtgctggcatcgctgcaatattagcatacattctgcgtgagaatgagaagttatcatcatccacatgtcttgcatttggaccagctgcttgcatgacatgggacttggctgagtcgggtaaagacttcatcacaaccattgtcaacagaaatgacctagttccatcttttggcaaagtttctgctgccaagctccgtacagaggtcatggcatcatcctgggtacatgaccttcgtgagcaaattcagcagaccagattcttgggctttgtcaatcgctctgtgagcttcatccgatcgcacgtgccattcgtctctgatccaagatccaaggttgtagatgttgacatgctggtgcccaacagctctgaggctgatcaggtgaagccttcgtcaaattcagatgctgtggtgaagaaacgccatgcaatagcttgctggtcatgtgttgctgcacataagcattccattgactctgcaaaacatggaactcatgacatcacaaatcaaactgatgtcaatgtcaaagctgagaaaactgacatcgaaacggcacaactagtctcaatttccatggaagaacttgaccttcaagaatcagataatgacgatgataccgacagaggggagaatgagccagctctcaatgaaacagacgaagatcaggccgtggagcttctagaaaccttgaccgacaacccacacgagccgtcatcgtcgtcgagccaaagtcaagatcccccccagctctaccctccaggaagaataatgcacatggttggattgccatcatcatcagagccaaacagtacaagtgaacaaggtgaggaggtcgttgccttgtatgagacacctcgacatctttacagcaagattcgcttggcgagatccatgataagggagcattacatgcccaagtacatcaggacaatggagctgttgatcgacaagctcgtcgccgaggaggaggacggcatcgatgacgaccacagattgggatcattgtag
More
|
|||||||
| Protein seq | MGAKGGMATAAGTAVLVYLVLSGRLCGDAAGDEDQTISAAVSAAVEARRRRRKEEAGRARRRGARARRWPERAPAGWGEAAAAAARTVRYTYGETLGKWPLGEIAFGLKYYMRQQGNLQHEYAGSNSQLLEGPVVKEELISLLGYLKLCMYFSKKPYKVFMEFGGYDESDVLIKKSKARLMKPSFTVVRDRSAKCFLLFIRGAISVKDRLTAATGAEVPFHHVVTQDGHVSKLVLGHAHCGMVVAARWIANQAIPCLNEAVAQFPDYGVKIIGHSMGAGIAAILAYILRENEKLSSSTCLAFGPAACMTWDLAESGKDFITTIVNRNDLVPSFGKVSAAKLRTEVMASSWVHDLREQIQQTRFLGFVNRSVSFIRSHVPFVSDPRSKVVDVDMLVPNSSEADQVKPSSNSDAVVKKRHAIACWSCVAAHKHSIDSAKHGTHDITNQTDVNVKAEKTDIETAQLVSISMEELDLQESDNDDDTDRGENEPALNETDEDQAVELLETLTDNPHEPSSSSSQSQDPPQLYPPGRIMHMVGLPSSSEPNSTSEQGEEVVALYETPRHLYSKIRLARSMIREHYMPKYIRTMELLIDKLVAEEEDGIDDDHRLGSL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016430 | OsLima_12g0016430.02 | Chr12 | 21324270 | 21324485 | - | IsoSeq | ||
| CDS seq | atgagacacctcgacatctttacagcaagattcgcttggcgagat |
|||||||
| Protein seq | MRHLDIFTARFAWRD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.071304 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0554500 | RBH | 0.560572 | 1.331803 | 1.405076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36770 | RBH | 0.366016 | 0.767847 | 0.314827 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0554500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016920 | RBH | 0.658774 | 4.853240 | 2.849269 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017050 | RBH | 0.246177 | 1.988925 | 0.976744 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017400 | RBH | 0.389124 | 16.156858 | 3.786186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016730 | RBH | 0.271176 | 0.405179 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016240 | RBH | 5.492123 | 3.883876 | 5.166033 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0297200 | RBH | 3.783543 | 4.090953 | 2.1814955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016190 | RBH | 0.133282 | 0.666048 | 0.392422 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0330100 | RBH | 3.14175 | 6.9762375 | 3.364917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016650 | RBH | 0.419211 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016630 | RBH | 2.529361 | 12.904627 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016620 | RBH | 0.253753 | 0.0 | 0.278070 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016800 | RBH | 0.295305 | 3.488729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016590 | RBH | 0.000000 | 2.834733 | 0.492609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016260 | RBH | 0.736536 | 4.923760 | 1.859570 |
