Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0016200 | OGI:12024480 | 2/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:21062756-21063001 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGGAGGAGTCTGCCCCTTCTTCCCTTTCAGAAGAAGAATACGCCATGGAACTTTTATTGACGAAGTCGTTCGTTGGCAGTACTCAGACGCCCTGTGGCCGGAGGTGTGGTATATCAACAGCCATGCCGTGTTCGTGGAGTACTTATCGAGGGTTGTCGCCGGGCTGGGTGTCCTGATTTTCACTTGGTCCACCGTCGTCCTTCTGGGCGGCTTCGTCTCCCTGCTCGACAAGGAGTGTTAG |
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| CDS seq | ATGGCTGGAGGAGTCTGCCCCTTCTTCCCTTTCAGAAGAAGAATACGCCATGGAACTTTTATTGACGAAGTCGTTCGTTGGCAGTACTCAGACGCCCTGTGGCCGGAGGTGTGGTATATCAACAGCCATGCCGTGTTCGTGGAGTACTTATCGAGGGTTGTCGCCGGGCTGGGTGTCCTGATTTTCACTTGGTCCACCGTCGTCCTTCTGGGCGGCTTCGTCTCCCTGCTCGACAAGGAGTGTTAG |
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| Protein seq | MAGGVCPFFPFRRRIRHGTFIDEVVRWQYSDALWPEVWYINSHAVFVEYLSRVVAGLGVLIFTWSTVVLLGGFVSLLDKEC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016200 | OsLima_12g0016200.01 | Chr12 | 21062756 | 21063001 | + | NAM | ||
| CDS seq | ATGGCTGGAGGAGTCTGCCCCTTCTTCCCTTTCAGAAGAAGAATACGCCATGGAACTTTTATTGACGAAGTCGTTCGTTGGCAGTACTCAGACGCCCTGTGGCCGGAGGTGTGGTATATCAACAGCCATGCCGTGTTCGTGGAGTACTTATCGAGGGTTGTCGCCGGGCTGGGTGTCCTGATTTTCACTTGGTCCACCGTCGTCCTTCTGGGCGGCTTCGTCTCCCTGCTCGACAAGGAGTGTTAG
More
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| Protein seq | MAGGVCPFFPFRRRIRHGTFIDEVVRWQYSDALWPEVWYINSHAVFVEYLSRVVAGLGVLIFTWSTVVLLGGFVSLLDKEC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0285100 | SBH | 30.280594 | 30.580265 | 27.862715 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0285100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016710 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016840 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017180 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016510 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009500 | SBH | 79.345589 | 68.573959 | 55.447197 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0294600 | SBH | 0.018142 | 0.1240575 | 0.012992 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015950 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0327100 | SBH | 0.00667 | 0.0373135 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016420 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009700 | SBH | 0.520960 | 2.636267 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016410 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009400 | SBH | 13.157883 | 50.981449 | 29.620802 |
