Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0016070 | OGI:12013520 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:20976578-20978924 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaataatgaagctggtggggaaggtgatggcattgctgctgagagcccagaggatgaatcaatggaggagattggcacagatggtgaggttagcactaaggaaaacaagttcccaagatacaaaaaaaaaaggtagggactccttgttttgagctgggcatgaagtttagctcaaagaagcagtttaagaaggctgtcactaagtatgctctagctgagaggaaggttataaacttcatcaaggatgacttgaagagggttagggccaaatgtgattgggcaagctgtccttgggtatgcttgctgtccaagaatactaggagtgatagctggcagatagttattcttgagagcttgcatgcatgtccacctaGaagggataacaagatggttacagcaactaggattgcagtgaagtatggaaagattatccttgccaaccttgggtggaatttggcccacataaaggcaactgtccaagaggagatgtttgctgaagcatctgttccaaagctgaaaagggctaaagctatggtgatgaagaaagcaatggatgcaaccaatgggcagtatcaaaagctatacaactaccagcttgagctccttaggagtaaccctggcagcacagtagttgtcaacagggaaataggcactgatccacctgtgttcaaaaggatttacatatgcttggatgcctgcaaaagggggtttgtagatgggtgcaggaaggtagttggcctggatggctgcttcttcaagggggcaacaaatggagagctgttgtgtgctataggtagagatgcaaataaccagatgtaccccattgcctgggctgttgtgcacaaggaaaataatgaagaatgggactggttcttggacttgctgtgcagtgacctcaaagtgttggatggaactggatgggtgttcatttcagaccaacaaaaggtacattattattttgttaacattaattttcaaatgctgcatgtttgtgagatgataactaaatgcaattttgtttacaatgtagggaatcatcaatgcagttgagaaatgggcaccacaagctgaacacagaaattgtgctaggcacatttatgcaaattggaagaggcatttcagtgacaaagaattccagaagaaattttggagatgtgctagccgtgcatggttcaggttaggctcaaactgcgattcagttgataataatatgtgtgagtcattcaataaatggatcctagaagcaagattttttccaattatcaccatgctagagacaattaggaggaaggtgatggttaggatttcagagcagagaaaggtttctgctagatggaacactgtggtctgtccagggatcctaaagaaattgaatgtgtatatcactgagtcagcatactgtcatgctatatgcaatggagctgacagctttgaggtaaaacaccacaccaataggttcactgtgcagctggacaagaaggagtgttcttgcaggtattgacaactctctggtcttccatgcccccatgcaattgcatgtatattttacagaactaacacactggatgagttcactgctgattgctacaaagtggatgctttcaagagcacatatgagcattggctactaccagtggagggcatgaatgcatggctagaagatgatagggagcaactgactgcacttgggtatataaagatgccaggcaggcccagaactgaaagaaggagagaggctcatgagccagctaagccttctaaggtatcaaaatttggcaccaaggtcagatgcaggacttgcaagcaggttggccacaacaagtcaagctgtcacaaacacaatccagctcaagctgcaggtggcagttcacagcaggttgcaacacccagccacaatcttgtactgtccaacaccccccagagttgtgcacaaagtagaaaaaggaaggcaactggcaccttgactaccactacttcagcctctcagtcaaaggcaaccaagccgacaaaaaaggtaagctaaatcagccatgccatttcattgtgcatattttgatttaaactaatgtgtgcttcatctgattctacaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacacattctggtggctcagctagggttgatttgcaggccaatgttacaggctccaacagctctacaagtgtagctgtcactgttacttcagggaaagcatatgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga
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| CDS seq | atgaataatgaagctggtggggaaggtgatggcattgctgctgagagcccagaggatgaatcaatggaggagattggcacagatgcctctcagtcaaaggcaaccaagccgacaaaaaaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacacattctggtggctcagctagggttgatttgcaggccaatgttacaggctccaacagctctacaagtgtagctgtcactgttacttcagggaaagcatatgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga |
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| Protein seq | MNNEAGGEGDGIAAESPEDESMEEIGTDASQSKATKPTKKAQMEPLQIVRVNARAKISTHSGGSARVDLQANVTGSNSSTSVAVTVTSGKAYVSVSAQEPARTTTKNKAKVPLLLLPPWESDKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0016070 | OsLima_12g0016070.01 | Chr12 | 20976578 | 20978924 | + | NAM | ||
| CDS seq | atgaataatgaagctggtggggaaggtgatggcattgctgctgagagcccagaggatgaatcaatggaggagattggcacagatgcctctcagtcaaaggcaaccaagccgacaaaaaaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacacattctggtggctcagctagggttgatttgcaggccaatgttacaggctccaacagctctacaagtgtagctgtcactgttacttcagggaaagcatatgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga
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| Protein seq | MNNEAGGEGDGIAAESPEDESMEEIGTDASQSKATKPTKKAQMEPLQIVRVNARAKISTHSGGSARVDLQANVTGSNSSTSVAVTVTSGKAYVSVSAQEPARTTTKNKAKVPLLLLPPWESDKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g35970 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005600 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018510 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018720 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026410 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0287300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025820 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0634600 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019480 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026630 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0032330 | SBH | 0.123120 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031840 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021140 | SBH | 0.0 | 0.0 | 0.0 |
