Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0015550 | OGI:12055650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:20203398-20212515 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactgcagttgcggctccggcgcatgctgttgcaggccagcaaacgcctctTCtctgtaaaggatgagcagcaactcaccatctggttcacccgcgacaagatttgcatcatagatgtcgatcgggtgaagcttgtcaagctcttcctgaagatatccttcaataccatcatgctcccgtctccagcagtgtaatgcgaatgcagatatcaggctccagctcgtgattctctttcttgtaatgaggattgtgatggttccattcacatataggtccatttggtgatagacaagtgctctgactgatctcaggcgtgcggcttcacaaaacatcactgctaagcgcgcaattgctttcctttggacatgaataagtgggtggtcgcgcggaagaccattgttgaagttcagtagtctgtagtatgaatcaagtacagacggtggccccactgtaacctcatccctgcaaaattgcaatgtttcaagtcattactaacttcttatagatcagaaacaaagacattataacaattttcatgtacaaagtacaagtttttcttggggcggtagccgcggtattcccaagtcattcgaggccatctgttctagaagaaccaatggttgagtatagtaggtagtaatatatgtcatcacttactaaaggataattaaacgttttgacagaatatccgtaggaaataaatgctaaattattatttcatttattaactgccttactacagaatattttgactgaccatatcttatctttaggaagatgagctttgatcttttacagatattcccttaaaacaaatgtacgcatcaaacattaagaaccgaataatattttggagaattaaatgtagtagaacataaattttgtgaatcttaaacatccaaataatttagaatattAgaatataaaaatcagaaagaccccaatgaacttaatgtcgaacctagaggaaaaattgataatgcaaacttgaattttcaacactctcagtgtaaatttaaaatcatgacgaatcaaattcaatatttgaaagcaaaggtttgtatttttctatttctgttatatcaatgcacatatatattcttaaacttcggtttgataattcaatatttgatcttgaatgtgctttattatcattacttgtgtcaatccaatcctgatgcaaaattaatagaatcatttgtggaacggtagagagctagtagaattggtccaatgcacacTtttatttatcaggatacatgtacagtgactaactagagctacacacagagagggaacgtaccataagaattaataggacgatatgcacacacgttcacaggtttgctaacatcatttatcatgttgcttcttttttttagctcaaaccacagcccctgtgaataACacactaaacacgattacaattttgtttaccagctgtccgcccctatagagtgttaagaataacctaaagtattgcctcttgaagggtaaaaggagcaacttgaaacaacttaaaagtacagctaggaaagatacacttaccagtcctgcagaaggtgaccatagtctgctttcgggtataagataggttgggcatcgagaatgtctggaggggtttctgcgtcagagaagttgaaccactgaccagctccatctttgatggcactcacatatgcgtttctttggtcaatgagtatctgaatgttagaatttcaatggttactctcattgagaagaggatggcactcagagtggggcaattttctggttttcttcattcacaaactcaaaagccatacctacccgagagaggttggatacatatatatagccatagctggctgctagcctattgttgcaccctcctagtctaaaattcgaaatttgaatgggatgttgtcctagagggcatccaaactgaataaagcataaaggagatgctaactgctgctgtcctactaaccgcagctgtcctagtaactgaaaaatatgctaaaggggtagatgctgtcctgaaaaggtgaaactacccaaaagcaaaaagaagaatcacgaccaaggaccataaagacttatccatgattatccccctaagtcttgtgcgtcgtcttgtggggaagttgggccatcccgatcctggagcagagctcgaggaacttgatcctcccaagaggcttggtgagcaagtccgcaagctggtccttggtgttgatgtagcccttgatgctcccttcctccaagtagcttcggatgaagtggtaccttacccggatgtgcttgctccgttcatgaaaaacggggttctttgccagagccagagcggacttgctatccaccctgagctccaccgctccagtatctttgccgaggagatcactaagcagtcgagtaagccagagcacctgggtcgaagcggcggaggccgccatgtactcggcctcgcagctggacagggccaccacctgctgcttgaccgactgccagctaacgaggcactcgccgaggaagaagaaaatcctgctcgtgctcttgctggtgtcgatgtcgccggcgtggtcgctgtcgctgtacccgacgaagtgtgccttgccaggacacctcgggtagtagagaccgtggtcgagagtccccacaacgtagcggatgatcctcttcaaagcctcctggtgctccgctgtcggtcgctgcatgaactgactgacgtagccgacggagaaggccaagtccggccgtgtgtgggtgaggtagcgaaggctCcccacaagacgccggtactgtgtagcatccacttcctccgtcgtgctatcgcggctcagcttcagtctctcctctaccggagtgagagctgggttgcaatcggtgagcccagccagCTcaacgacgcgcttGgcgtaggcggtctgtcgaagtgtgttcccggagtcgtcctggtgcacctcaatccctaggtagaaagagagaggccccagatcactcatctggaaggtagccttcatctcctccttgaacatcgcgacctccgtatccttggtgccggtgatcaacaagtcgtcgacgtagacacccaccagcaaggcatttcctccattgccccgccggtagatggccgcctcgtgcgggctttgctcaaatcccatccccttgagcgtggaatccaacttggcattccatgccctcggtgcctaccgcaagccgtagagggccttgtgcaggcatagcaccttgccctccttgccgaggatcacaaatcccggcggctggtgcacgtagacctcctccttcaagtcgctgttcagaaacgccgacttgacgtccatgtgatggacgccccagccttcctgagcagccagcgcaagaaggagtcgcacggactccatctgtgccacgggagcgaaggcatcgtcgtagtcgatcccctcctgctgcacgaaaccgcgtgccaccaagcgagccttgtgcttgacaatggctccggcttcatccctcttcatcttgaacacccacttaagggtgatcgcgcgatgaccacgagggaggtcagcaagctcccaggtgcggttctcctgaaccgcgtccatctccgactgcatcgcggcacgccatgccgcgtgtttctcggcctctgcgaaagaccgaggctcaccgtcactgcacgcaaggtgcgactgcgcctccaggtcgcgaggcactagtcccggcaccggctggtcgccgagaagatcctccatcgtacggtaccgtagctgctcgccatcgtggtacgcgtcaatgtgctccccgtcgtgggagagcggagtagcgaactctaccgggctgcgctcaacacgagctggcgtcggagtagacgtgctcggaggagtggctgttggtgctagggcgcgtggggtcgccggctgtggtggtgtcggcgaagagctcgtcgcagtcggagtcgtggcccgagggtgtgttggtgtcggagttggtggaggctcggggactggggtagacacgctcggtgaagaagagctgcctactcccccagctccctcgaagtggacgtactcgatggtgaagtcgtcatacgtcggagtcgaaccatcatccaccgccttgtcccatacccaccctcgcccttcgtcgaacactacgtcgcgcgctgtgcgcacacgctgtgtctcggggtcgaggatgcgataggccttcgagccctccgcgtagccgatgaacacccctgtggtgctcctgtcgtcgagcttgccgatgtggccaagctccttgacgaacgcgaggcagccgaagaccggcaggtgggagacccccggcttgcgcccatgccaagcctcgtacggtgtcctgccatcgagggccttggtaggcgagcggttgaggatGtagatggccgtcaccaccgcctctccccagaagatggccggcatccccctctgcttgaggagagcccgagccatccccacaaccgtctggttgcgccgctcgacgacgctgttctgctgcgggctgtacggcgcggtgtagtagcgctgaatgccctcatcagtgcagtacgacgcgaattcagccgccgtgaattcgccgccgttgttggtgcgcagcacgcgcagcttgcggccacactccgcctctgcagtagcctgcgcgcgccggatggtgtccgcagcctctcccttgctgccgaggaccatcacccacatgtagcgggagaggttgtcgacgagtagcagaaagtaacgtcgtcctcctggtgtggctggtgtcactgggccacacaagtccccgtgcacgagctcgagccgctccttggctcggaaactcgtctgctggggaaaggggagccgcctctgcttcgttaggacgcagacgtcgcagagctgctccacatggtcaaggcacggcaggcctcgcaccatctccttggcgctgagccgctttagggcctcaaagtggaggtgcccgaaacgctcatgccactgccAcgcctcgtcgtcccgacgagcggcaaggcaaactggttgtgcgacctgcgcgctgaggatgtagagtcgattagtgcctctggttaccttggcaagaaggcgacggcggcgatcccaaatcctcatgactccgtgctcgaccaacacgcgtgagcccttctcatccagttgtcccacgctgatgatagagtttctcaatgcagggatgtaatagactccgatgagcagcctgtgctcaccggacttggcggtgaaggtgacggagccaacgcccttgatctccacgccggaggcatccccaaacttgacagagcctcggacgctggagtcaagctcggtgaagaactcccgttggccagtcatgtgatgggtggcgccggtgtcgaggtaccacccatcagccttgtcgttgctggagctgttgccgagggaggcgtgtactttcagctcctcgaggtgaaggaaagccgttgtggccggtgccgctgaagatagctcgatgctggcgtgtgccaggagtagagtcagctcttcctcctccacctgtgcgatgtgggcctggccgcgtcgtggctatcgacagtctttggcccaatggccaagcttgccacagttgcgggaggcgtcatctcgtgccggcttgtggttgccagcggcgccgccctgggcgcctctgcgagcgccaccctcggcgcgtcttcgcgcccaccgcagctgaacacctcagcgcgccctgcgcggcttgcggctgcctgtcgagggagaggacccccccttcctcccgtcaccctggttggcctcccactgctcctgagtgagatggagcttcccgccaatggtgataggccccgagagaggctgtggctcatcgccgtcgacgaccttgaggtgacctaacgcctcctcgatcgacatcgtggagaggtccagcagagactcgatcgagcgagcgatctgcctgtacttctctaggacgcagcgaaagagcttctcaacagctctctcctcgtcgtaggtgtcgtcgccgtactgcaccatcttctgcaaaagagtgttgagacggagggcaaagtcatcaacatcctcacctggcttgaaggctaggttctcccactccttgcggagtgcctgtagtgtggacttgcgggcgcggtcactgccgatatgtgccacagcgatggcgtcccaggcctccttggcagtccgcttctgggaaagcgagaactgcatctcgggcgggattgcagcgatgagggcatccagcgcccatcgatcctcgtcgtagtcgacgtcgccgtaccggactgcctcccacatgtgccgcacctggagcctcaccctcattaccgcggcccactcgatgtagttggttttggtgagggtaggccacccaccgctgggaccaaagtccctgaccaccgtctagacggcgtggtgaccatggcgccggttaggggagggagagccgcgctgcctgcgagggccgcgcgcgggctctgggctgccgctggcacgcccacgcccgtctgggttcccgtcggcgggcgcgcggtcccttgggctgccgccgccgccgtggaggtgggatacttcccaccgctctgcccgctcccgtgcccttcctcttgccagctcctcaagctccctgtcggcggtgatgttgccagcgatggagccgttgatgctgctgcgcaaggtctcaacctctaccttcgccgcacgtgccgcatcttccgccgcctctgcttttgcctctgccctggctgctgcagcggtctgagccgttgctcgcctgcgctcttctgctgcggcaagctcggcgtcctgttgacgccgagtgctcgaggcgaccgaacgccgagaccgaacgtcggacatggcgcacctccgggggggctgctgcgtggagagggggaagggaaaggggaaggaggagcagccggtgctgctgctgctgctggctaagagctcaaccgagcttaggaaggagtggaacaaaagatgtttagcctacaggaaagtgtggttctgataccagatgttagaatttcaatggttactctcattgagaagaggatgacactcagagtggggcaattttctggttttcttcattcacaaactcaaaagccatacctacccgagggaggttggatacatttatatagtcatagctggctgctagcctattgttgcaccctcctagtctaaaattcgaaatttgaatgggatgctgtcctagagggcatccaaactgaataaagcataaaggaggcataaaggagatgctaactgctgctgtcctactaaccgcagctgtcctaacaactgaaaaatatgctaaagggatagatgctgtcctaaaaaggtgaaactacccaaaaacaaaaagaagaatcacgaccaaggaccatagagacttatccatcactgaacagatggttcctcaggcatgtcaagagatattatgtgccacccctcattgcttgttataggaacattcctgaaatcgtgatgtgctctctgctgaaaaagttgtccaatatcgtccatgaggtcattgtagttctgactggacaaatcaaccacgttgatgttgagaactggtatttcctgcaagaagaaggatccatccagtgcatgagcaactgtaaggatattcagtttctgcacttgcacttgttcaaaagtcaaaacaatggcatttcaTttcaattaatacttcaatctttatgtgcactttgggaaaatgtgatacagTttagctacagggaatagaaccagaaattgtttcacaacaaaatattgcagaactggcctgtgcagcaattctttcggtctacaattaaatagaaagcagggctcttgcctttcttaagaagaaaaaaaaagtgcatacgtcaatagaagacacagagtatcattcacatgtgctacttatcatctgttttattctcagtgatgtatctaaacttattttttgttttggagattctcggaacaatgaatcatgcaacttcatttagttttagcaaaggatttcatgttgagctgcacatttggatatgttaagggcttgttcgcttagttcatatgacgaagagattggagaggattgagagggtattaaactattaattccacactcaataggtttgtggaattaatcatctccaaatctcctttaattcccatggggagggattgaccgagctagcaagttaagaaaactatggattaaTtttcttttccaaaagacaaattttacttacattttttagtaacataaagtctctaattattattctcatcatgatattttaagacaaatacgcttgttatagcatggaaattgctaaagtacacgtattaaacaccattTaacacatttgctctcgataaaagaagttaacaaggttacatacttccattctgagcagcttagatagcgtcCTctcttcacctgcaaaatagagtcatttgtgattcaaatgaacatttttaagcaaaCaaatggtacatttttttaaaaaaagagtaatagtgatgttatttatttctttatatttatatatcatgtatctttatgcaaaccaataaataaatcaagcgaacttcgctggttttaacaaaccggttggtctttcctgataagtagggatgggagagtgtcctatgctgaaaaatggactccctcatcagttttgaaggacggttttgctaatatggtgatgttgacatgatatttatcccatgtagcgcttatgtgatattagaattaaaaaaatatatgtgagattcatttgtcattcacatAaaaaaatatatatagtgggactcactgacatatggggcccacgtatcatcaTCtctctctcaaacccttcttccacctCcctctctcccttatctctctattttctttcccccttcggtcttggcgatgacaggcaggacgacgctggcgagcggacgagggccgaagcggcagcggcggggagctgattcccatccctttccttggctccccagaaaccctaatccatgtgccgcatttcgcctctccctgcgcaagaccgcatcacatgccgccggcgtctactcacattgctcatagattactgcccgcgctagccat
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| CDS seq | atggctagcgcgggcagtgaagagAGgacgctatctaagctgctcagaatggaagaaataccagttctcaacatcaacgtggttgatttgtccagtcagaactacaatgacctcatggacgatattggacaactttttcagcagagagcacatcacgatttcaggaataaacccctccagacattctcgatgcccaacctatcttatacccgaaagcagactatggtcaccttctgcaggactggtaaggatgaggttacagtggggccaccgtctgtacttgattcatactacagactactgaacttcaacaatggtcttccgcgcgaccacccacttattcatgtccaaaggaaagcaattgcgcgcttagcagtgatgttttgtgaagccgcacgcctgagatcagtcagagcacttgtctatcaccaaatggacctatatgtgaatggaaccatcacaatcctcattacaagaaagagaatcacgagctggagcctgatatctgcattcgcattacactgctggagacgggagcatgatggtattgaaggatatcttcaggaagagcttgacaagcttcacccgatcgacatctatgatgcaaatcttgtcgcgggtgaaccagatggtgagttgctgctcatcctttacagaGAagaggcgtttgctggcctgcaacagcatgcgccggagccgcaactgcagtga
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| Protein seq | MASAGSEERTLSKLLRMEEIPVLNINVVDLSSQNYNDLMDDIGQLFQQRAHHDFRNKPLQTFSMPNLSYTRKQTMVTFCRTGKDEVTVGPPSVLDSYYRLLNFNNGLPRDHPLIHVQRKAIARLAVMFCEAARLRSVRALVYHQMDLYVNGTITILITRKRITSWSLISAFALHCWRREHDGIEGYLQEELDKLHPIDIYDANLVAGEPDGELLLILYREEAFAGLQQHAPEPQLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0015550 | OsLima_12g0015550.01 | Chr12 | 20203398 | 20212515 | - | NAM | ||
| CDS seq | atggctagcgcgggcagtgaagagAGgacgctatctaagctgctcagaatggaagaaataccagttctcaacatcaacgtggttgatttgtccagtcagaactacaatgacctcatggacgatattggacaactttttcagcagagagcacatcacgatttcaggaataaacccctccagacattctcgatgcccaacctatcttatacccgaaagcagactatggtcaccttctgcaggactggtaaggatgaggttacagtggggccaccgtctgtacttgattcatactacagactactgaacttcaacaatggtcttccgcgcgaccacccacttattcatgtccaaaggaaagcaattgcgcgcttagcagtgatgttttgtgaagccgcacgcctgagatcagtcagagcacttgtctatcaccaaatggacctatatgtgaatggaaccatcacaatcctcattacaagaaagagaatcacgagctggagcctgatatctgcattcgcattacactgctggagacgggagcatgatggtattgaaggatatcttcaggaagagcttgacaagcttcacccgatcgacatctatgatgcaaatcttgtcgcgggtgaaccagatggtgagttgctgctcatcctttacagaGAagaggcgtttgctggcctgcaacagcatgcgccggagccgcaactgcagtga
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| Protein seq | MASAGSEERTLSKLLRMEEIPVLNINVVDLSSQNYNDLMDDIGQLFQQRAHHDFRNKPLQTFSMPNLSYTRKQTMVTFCRTGKDEVTVGPPSVLDSYYRLLNFNNGLPRDHPLIHVQRKAIARLAVMFCEAARLRSVRALVYHQMDLYVNGTITILITRKRITSWSLISAFALHCWRREHDGIEGYLQEELDKLHPIDIYDANLVAGEPDGELLLILYREEAFAGLQQHAPEPQLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016350 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015700 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015180 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0279600 | SBH | 0 | 0.008484 | 0.010161 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015350 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0311100 | RBH | 0 | 0.0128565 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015500 | RBH | 0.0 | 0.0 | 0.0 |
