Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0014970 | OGI:12053410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:19631635-19632634 | ||||||||
| Gene Symbol | C3H67, OsC3H67, OsTZF4, OsCCCH-Zn-7 | ||||||||||
| DNA seq | atggggctgtcgtcgccggggtcgtcgtcgttcacgccgccgctatcgccgtcggccggCgggggcgggggcgggggcggcggcggcggcggcgcgtggccgcagcagccgagcgtgccggcgctctgcctgcccgggagcgccgggaacctccacctgagccggctgcgcacgtcgctgagcgcgcgcgacatggccgtcgacgagctgctcgccgcggcggcggcggcggcggactacgacggcctcgtcgcctcccccgcctccatccggtccgcgagggggaaggcgcttgtgccgtcaaatctcgacgagctcttctccgctgagctcgccgccgccgcggcgtcgcgctcgccgcgctacgccgaccaaggcggcgccgcgttctccccgacccgcaaggccgccgtgctcaaccaattccagcagcagcagcagcagagcttgctctcgccgcgggcggccgcggtgacaccagagccggtctccccaatgagctcccgcctcctcgccgcgctggcgcagcgggagaagatgcagcagcagacgctgcggagcatgagctcacgggacctcggcaacgccgcgtcgctgctggtcggctcgccggtgagctcgagcatgtccaaatgggggttCccctccggcaacccggactggggcgccgacgacgaggagctcggccgcctcaagcgttgctcctcgttcgagctccggtccggagccgccaatggcaaccatgagcctgacctctcatgggtcaacaccctagtgaaggagccgacaccggagaagatgatgacgacgacatcggcaatggattccattggcatcttgggacagaacacaagccgtgatcacatcgtcggaggcgaggatgacactgccggagtcatcagcagctggcttgaacagctccagctcgatgagatggttgtctagaaacacaaaacacaaacacaaactgaacaagaaatgcgccattcttttagatgtg
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| CDS seq | atggggctgtcgtcgccggggtcgtcgtcgttcacgccgccgctatcgccgtcggccggCgggggcgggggcgggggcggcggcggcggcggcgcgtggccgcagcagccgagcgtgccggcgctctgcctgcccgggagcgccgggaacctccacctgagccggctgcgcacgtcgctgagcgcgcgcgacatggccgtcgacgagctgctcgccgcggcggcggcggcggcggactacgacggcctcgtcgcctcccccgcctccatccggtccgcgagggggaaggcgcttgtgccgtcaaatctcgacgagctcttctccgctgagctcgccgccgccgcggcgtcgcgctcgccgcgctacgccgaccaaggcggcgccgcgttctccccgacccgcaaggccgccgtgctcaaccaattccagcagcagcagcagcagagcttgctctcgccgcgggcggccgcggtgacaccagagccggtctccccaatgagctcccgcctcctcgccgcgctggcgcagcgggagaagatgcagcagcagacgctgcggagcatgagctcacgggacctcggcaacgccgcgtcgctgctggtcggctcgccggtgagctcgagcatgtccaaatgggggttCccctccggcaacccggactggggcgccgacgacgaggagctcggccgcctcaagcgttgctcctcgttcgagctccggtccggagccgccaatggcaaccatgagcctgacctctcatgggtcaacaccctagtgaaggagccgacaccggagaagatgatgacgacgacatcggcaatggattccattggcatcttgggacagaacacaagccgtgatcacatcgtcggaggcgaggatgacactgccggagtcatcagcagctggcttgaacagctccagctcgatgagatggttgtctag
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| Protein seq | MGLSSPGSSSFTPPLSPSAGGGGGGGGGGGGAWPQQPSVPALCLPGSAGNLHLSRLRTSLSARDMAVDELLAAAAAAADYDGLVASPASIRSARGKALVPSNLDELFSAELAAAAASRSPRYADQGGAAFSPTRKAAVLNQFQQQQQQSLLSPRAAAVTPEPVSPMSSRLLAALAQREKMQQQTLRSMSSRDLGNAASLLVGSPVSSSMSKWGFPSGNPDWGADDEELGRLKRCSSFELRSGAANGNHEPDLSWVNTLVKEPTPEKMMTTTSAMDSIGILGQNTSRDHIVGGEDDTAGVISSWLEQLQLDEMVV |
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| Function | Zinc finger CCCH domain-containing protein 67 [UniProtKB/Swiss-Prot:Q2QPW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0014970 | OsLima_12g0014970.01 | Chr12 | 19631635 | 19632634 | + | NAM | ||
| CDS seq | atggggctgtcgtcgccggggtcgtcgtcgttcacgccgccgctatcgccgtcggccggCgggggcgggggcgggggcggcggcggcggcggcgcgtggccgcagcagccgagcgtgccggcgctctgcctgcccgggagcgccgggaacctccacctgagccggctgcgcacgtcgctgagcgcgcgcgacatggccgtcgacgagctgctcgccgcggcggcggcggcggcggactacgacggcctcgtcgcctcccccgcctccatccggtccgcgagggggaaggcgcttgtgccgtcaaatctcgacgagctcttctccgctgagctcgccgccgccgcggcgtcgcgctcgccgcgctacgccgaccaaggcggcgccgcgttctccccgacccgcaaggccgccgtgctcaaccaattccagcagcagcagcagcagagcttgctctcgccgcgggcggccgcggtgacaccagagccggtctccccaatgagctcccgcctcctcgccgcgctggcgcagcgggagaagatgcagcagcagacgctgcggagcatgagctcacgggacctcggcaacgccgcgtcgctgctggtcggctcgccggtgagctcgagcatgtccaaatgggggttCccctccggcaacccggactggggcgccgacgacgaggagctcggccgcctcaagcgttgctcctcgttcgagctccggtccggagccgccaatggcaaccatgagcctgacctctcatgggtcaacaccctagtgaaggagccgacaccggagaagatgatgacgacgacatcggcaatggattccattggcatcttgggacagaacacaagccgtgatcacatcgtcggaggcgaggatgacactgccggagtcatcagcagctggcttgaacagctccagctcgatgagatggttgtctag
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| Protein seq | MGLSSPGSSSFTPPLSPSAGGGGGGGGGGGGAWPQQPSVPALCLPGSAGNLHLSRLRTSLSARDMAVDELLAAAAAAADYDGLVASPASIRSARGKALVPSNLDELFSAELAAAAASRSPRYADQGGAAFSPTRKAAVLNQFQQQQQQSLLSPRAAAVTPEPVSPMSSRLLAALAQREKMQQQTLRSMSSRDLGNAASLLVGSPVSSSMSKWGFPSGNPDWGADDEELGRLKRCSSFELRSGAANGNHEPDLSWVNTLVKEPTPEKMMTTTSAMDSIGILGQNTSRDHIVGGEDDTAGVISSWLEQLQLDEMVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.041422 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0515500 | RBH | 1.917210 | 0.972363 | 1.085011 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33090 | RBH | 1.296517 | 0.653995 | 0.279303 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0515500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015220 | RBH | 0.253978 | 6.778260 | 1.685917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015360 | RBH | 0.098689 | 0.199413 | 0.880005 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015270 | RBH | 0.026338 | 2.216166 | 0.852107 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015070 | RBH | 0.031406 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014590 | RBH | 0.0 | 4.905226 | 4.171071 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0268600 | RBH | 2.3504175 | 7.05096 | 1.511123 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014770 | RBH | 0.190948 | 0.045145 | 0.468086 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0299000 | RBH | 2.410245 | 6.292857 | 6.342511 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015090 | RBH | 0.0 | 1.317211 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015020 | RBH | 0.230712 | 0.0 | 0.678432 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015170 | RBH | 0.0 | 3.586053 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015070 | RBH | 0.0 | 1.778855 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014830 | RBH | 0.0 | 10.125374 | 1.476924 |
