Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0014850 | OGI:12052980 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:19493420-19495457 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctttacatgtcaattccaacaagtaataattacccaaaaattggcatgtacgcattctaccaatcgatcagcccaatgaacagcaaaatctttctgataatcttaccaagaaagaatcaaattttgcattcaaaatgttgcaatccaaatgtcgatcacttggtgtggaagagctcctccatgtcctcgaggctccggccgcgggtctccggcaagcaggcgtagatgaacacgaacgacgcggcggcgatggcggcgtagaggtagaacgcccctgccatggtgatggcgccgtagagcgagatgaacgtcatggtgaccacgccgctgacgacgcggttcatggcggtgccgacgccggcgccctgcccgcgcagccgcagcggcaggatctccgagctgtacacccacgccagcggcccgatcccgacggagaacgcgcacacgaacgccaccaccacggcgacggcggcgcccgccgccaccgccgcgtcgtccctcgcgccgccgaacgcggcgaacaccgagccgagcgccacgagggacgccgtcatgccgcccgtgctggcgagcagcagcgggcgccgccccacgcgatcggtgagcgccatggcgacgaggatggagctcgccttggcgacgccgaacaccacgttgagccccaggaggagggtgttcgacgccacgcccgccgcggcgagcacgcgcgggccgtacagcaccacggagtcgatgcccgacgcttgctggaagaactgcagcgtcagcacgatggcgagcacccgcCGCAcgccgggcttggtcgccacctccttccacgcgccgccgccgccgccgttgccggcaacggagccggcggcggcgacgacgtcctcgatctcctgcagccgctgctcggcctcggccggcgtgtccgacgtgcggtcgagcaccaccctcgcctcgccgcgccgccccttcatcgccagccaccgcggcgactccggcatggtgagcacgcccgccgccaggaacaccgtcggcaccacgccggcggcgaacatcagccgccacgacaggtgcaccggcaaccccgagaaggcgaagttcgacacgtagctcagcatcactcccccattgataaatatcttcaaaaaacaaaaacaacacaaaacaatcataaaattcaaaactaatttgcccaaattcgatcgaaatttagtaactaaatcactcccaagaaacaacacaaaatcatcataaaattcaaaactaatttgcccaagtttgatcgaaatttagtaattaaatcactctcccattgataaatatcttcataaaacaaaaaaaacacaaaaaccatcacaaaattcaaagctaatttgcccaaattcgatggaaatttagtaaattaaaagaagtttgagatatgaatggggggtgacctcggggagggaggagaggaggccgcgggaggaggcgggggagatctcggcggcgtagacgggggcgatgacgagggcgtagccgacgccgatgccggcgacgaacctgccggccatgagcgcggcgtacccgccggcgagcgacatgacgagcgggccggcgaggaagaagccgttggtgagcacgatggtgagccgccgccccaggcggtcggaggtccacccggcgagcagcgcgccgacgagcgagtagatgttgatggcccccgaaagcacctcgatctgcgcgtcgctcacgcccaggtcctccgccatgaagatctgcgccccgctcgtcaccgccacgtctgcaagaaccaaacaacgaacgtcaatggcggcgtcggcggcgcgcgcgcggcgaggctagccgacggtgtgatcgatggtgtgcgtgcgtactgtagcccatgaggacggaggtcatggaggcgaggacggcgcagaagaaggggtacttgttgcggcgcggcggcgaggcgacggcggcggcggccggcttggaggaggcggcgagcagcggcgcctcgacgtccggcgccatggctgcggattaccaagctatagcttaatt
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| CDS seq | atggcgccggacgtcgaggcgccgctgctcgccgcctcctccaagccggccgccgccgccgtcgcctcgccgccgcgccgcaacaagtaccccttcttctgcgccgtcctcgcctccatgacctccgtcctcatgggctacaacgtggcggtgacgagcggggcgcagatcttcatggcggaggacctgggcgtgagcgacgcgcagatcgaggtgctttcgggggccatcaacatctactcgctcgtcggcgcgctgctcgccgggtggacctccgaccgcctggggcggcggctcaccatcgtgctcaccaacggcttcttcctcgccggcccgctcgtcatgtcgctcgccggcgggtacgccgcgctcatggccggcaggttcgtcgccggcatcggcgtcggctacgccctcgtcatcgcccccgtctacgccgccgagatctcccccgcctcctcccgcggcctcctctcctccctccccgagatatttatcaatgggggagtgatgctgagctacgtgtcgaacttcgccttctcggggttgccggtgcacctgtcgtggcggctgatgttcgccgccggcgtggtgccgacggtgttcctggcggcgggcgtgctcaccatgccggagtcgccgcggtggctggcgatgaaggggcggcgcggcgaggcgagggtggtgctcgaccgcacgtcggacacgccggccgaggccgagcagcggctgcaggagatcgaggacgtcgtcgccgccgccggctccgttgccggcaacggcggcggcggcggcgcgtggaaggaggtggcgaccaagcccggcgTGCGgcgggtgctcgccatcgtgctgacgctgcagttcttccagcaagcgtcgggcatcgactccgtggtgctgtacggcccgcgcgtgctcgccgcggcgggcgtggcgtcgaacaccctcctcctggggctcaacgtggtgttcggcgtcgccaaggcgagctccatcctcgtcgccatggcgctcaccgatcgcgtggggcggcgcccgctgctgctcgccagcacgggcggcatgacggcgtccctcgtggcgctcggctcggtgttcgccgcgttcggcggcgcgagggacgacgcggcggtggcggcgggcgccgccgtcgccgtggtggtggcgttcgtgtgcgcgttctccgtcgggatcgggccgctggcgtgggtgtacagctcggagatcctgccgctgcggctgcgcgggcagggcgccggcgtcggcaccgccatgaaccgcgtcgtcagcggcgtggtcaccatgacgttcatctcgctctacggcgccatcaccatggcaggggcgttctacctctacgccgccatcgccgccgcgtcgttcgtgttcatctacgcctgcttgccggagacccgcggccggagcctcgaggacatggaggagctcttccacaccaagtga
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| Protein seq | MAPDVEAPLLAASSKPAAAAVASPPRRNKYPFFCAVLASMTSVLMGYNVAVTSGAQIFMAEDLGVSDAQIEVLSGAINIYSLVGALLAGWTSDRLGRRLTIVLTNGFFLAGPLVMSLAGGYAALMAGRFVAGIGVGYALVIAPVYAAEISPASSRGLLSSLPEIFINGGVMLSYVSNFAFSGLPVHLSWRLMFAAGVVPTVFLAAGVLTMPESPRWLAMKGRRGEARVVLDRTSDTPAEAEQRLQEIEDVVAAAGSVAGNGGGGGAWKEVATKPGVRRVLAIVLTLQFFQQASGIDSVVLYGPRVLAAAGVASNTLLLGLNVVFGVAKASSILVAMALTDRVGRRPLLLASTGGMTASLVALGSVFAAFGGARDDAAVAAGAAVAVVVAFVCAFSVGIGPLAWVYSSEILPLRLRGQGAGVGTAMNRVVSGVVTMTFISLYGAITMAGAFYLYAAIAAASFVFIYACLPETRGRSLEDMEELFHTK |
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| Function | Polyol transporter 5 [UniProtKB/Swiss-Prot:Q8VZ80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0014850 | OsLima_12g0014850.01 | Chr12 | 19493420 | 19495457 | - | NAM | ||
| CDS seq | atggcgccggacgtcgaggcgccgctgctcgccgcctcctccaagccggccgccgccgccgtcgcctcgccgccgcgccgcaacaagtaccccttcttctgcgccgtcctcgcctccatgacctccgtcctcatgggctacaacgtggcggtgacgagcggggcgcagatcttcatggcggaggacctgggcgtgagcgacgcgcagatcgaggtgctttcgggggccatcaacatctactcgctcgtcggcgcgctgctcgccgggtggacctccgaccgcctggggcggcggctcaccatcgtgctcaccaacggcttcttcctcgccggcccgctcgtcatgtcgctcgccggcgggtacgccgcgctcatggccggcaggttcgtcgccggcatcggcgtcggctacgccctcgtcatcgcccccgtctacgccgccgagatctcccccgcctcctcccgcggcctcctctcctccctccccgagatatttatcaatgggggagtgatgctgagctacgtgtcgaacttcgccttctcggggttgccggtgcacctgtcgtggcggctgatgttcgccgccggcgtggtgccgacggtgttcctggcggcgggcgtgctcaccatgccggagtcgccgcggtggctggcgatgaaggggcggcgcggcgaggcgagggtggtgctcgaccgcacgtcggacacgccggccgaggccgagcagcggctgcaggagatcgaggacgtcgtcgccgccgccggctccgttgccggcaacggcggcggcggcggcgcgtggaaggaggtggcgaccaagcccggcgTGCGgcgggtgctcgccatcgtgctgacgctgcagttcttccagcaagcgtcgggcatcgactccgtggtgctgtacggcccgcgcgtgctcgccgcggcgggcgtggcgtcgaacaccctcctcctggggctcaacgtggtgttcggcgtcgccaaggcgagctccatcctcgtcgccatggcgctcaccgatcgcgtggggcggcgcccgctgctgctcgccagcacgggcggcatgacggcgtccctcgtggcgctcggctcggtgttcgccgcgttcggcggcgcgagggacgacgcggcggtggcggcgggcgccgccgtcgccgtggtggtggcgttcgtgtgcgcgttctccgtcgggatcgggccgctggcgtgggtgtacagctcggagatcctgccgctgcggctgcgcgggcagggcgccggcgtcggcaccgccatgaaccgcgtcgtcagcggcgtggtcaccatgacgttcatctcgctctacggcgccatcaccatggcaggggcgttctacctctacgccgccatcgccgccgcgtcgttcgtgttcatctacgcctgcttgccggagacccgcggccggagcctcgaggacatggaggagctcttccacaccaagtga
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| Protein seq | MAPDVEAPLLAASSKPAAAAVASPPRRNKYPFFCAVLASMTSVLMGYNVAVTSGAQIFMAEDLGVSDAQIEVLSGAINIYSLVGALLAGWTSDRLGRRLTIVLTNGFFLAGPLVMSLAGGYAALMAGRFVAGIGVGYALVIAPVYAAEISPASSRGLLSSLPEIFINGGVMLSYVSNFAFSGLPVHLSWRLMFAAGVVPTVFLAAGVLTMPESPRWLAMKGRRGEARVVLDRTSDTPAEAEQRLQEIEDVVAAAGSVAGNGGGGGAWKEVATKPGVRRVLAIVLTLQFFQQASGIDSVVLYGPRVLAAAGVASNTLLLGLNVVFGVAKASSILVAMALTDRVGRRPLLLASTGGMTASLVALGSVFAAFGGARDDAAVAAGAAVAVVVAFVCAFSVGIGPLAWVYSSEILPLRLRGQGAGVGTAMNRVVSGVVTMTFISLYGAITMAGAFYLYAAIAAASFVFIYACLPETRGRSLEDMEELFHTK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.152912 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0514000 | RBH | 6.569459 | 4.490925 | 0.308860 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32940 | RBH | 4.436616 | 2.831616 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0514000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015100 | RBH | 0.911528 | 0.0 | 0.869706 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015240 | RBH | 0.384587 | 0.987696 | 1.460242 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015150 | RBH | 1.377714 | 2.077784 | 2.147426 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014950 | RBH | 0.391518 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014480 | RBH | 11.972301 | 0.0 | 0.524956 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0265300 | SBH | 0.697703 | 2.3322195 | 0.6492405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014650 | RBH | 0.764536 | 0.000000 | 0.343091 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294900 | SBH | 18.880525 | 8.713324 | 0.2891755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014730 | RBH | 0.083261 | 0.182977 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015040 | RBH | 3.670269 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014990 | RBH | 18.902805 | 3.822189 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014910 | RBH | 2.345248 | 0.0 | 1.148434 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015050 | RBH | 2.008069 | 1.480691 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014950 | RBH | 1.289668 | 0.0 | 0.787205 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014720 | RBH | 4.019243 | 0.000000 | 1.604093 |
