Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0014650 | OGI:12052730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:19296260-19299362 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagatgatgagcttggaggaggaggaaacaatggcttctcctaccacctcttcgtgtggcacatgcaaatgcggtgccaacgacgacaaggcgaagaagacgaagacgaagaagtgcgagttagtgggctatgaggagctgcccgaatggctcaaggacaacgagttcatccatggctactatcggtgcgagtggccgatgaaggagaccatcctcagcatcttctccatccacaacgagaccctcaacgtctggacgtaagccctttcctccagttttgataattttcTtttcggagcgtaaaatttgcagcattttacagttcttgagaggtaccgagagataccacgactccaaaaaccgtaaaagatattactgttcattaacatcacttttgtcggcacaacttgctgaacctgatgctatttactcttcaggcatttgatagggttcttgctgttcctctgcctggcaatattcacagcaatggtgatcccaagtggtgacaatcttcacagcaacagcagcagaagcaggagcaatgcaacagctatggactactactacatccatggagatctgatggtgatgagcaacatgacaagggtgctgaggcatgaggcacttgcagcagcagcctgtctcctgctgcatgatcctgcagatttgtctcaacatgagcagatcccaaccagctgtccaaccaacacatcctcctattaCTCctccttctctcacctccacaatgtccaccagcagcggcaacatgccatccgggtactatgctacttaatTACtactactactgctccctccgttcctaaatataagatattttagttggatgtgacatatactaatactatgtatatagacatgatcaacatcccttatatttagagacagagggagtaTCtgtttgcctattgattttctctgctcctccgtttcgaattacttgtcggtctaggtttgttctaatagtttctttttaaccattactttgaattatatattgtgaatgtattttcatggtgaatctagaaatataaatcttataatgttaagctatactttgattttataaaaattggtagttaaagattaaaaatgtttggttcatgatAaaactaagacgatAaataatttgaaacggtggaaagtacatctgttttgtaattagtcttagtcttagtagtatagaggtactcccttcgtttcacagtgtaagtcattctaacattttctacatttatattgatgttaatgaatctacatatatatccatctagattcattaacatttatatgaatgtggcaaatggtagaatgacttatactgtgaaacggaggaaagctgccaatgtcatgtgtcatgtgtgtcatgtactcatgtggttcttgtgttgttctggttgacatggcctgtcagagcactgaccgatctcaggttggtggttacatgtcctaattaatttttagttagttggcagctttaaatgttgtgatggtgtactaccactgcatgtgttgcatttatacgattagtcctaatgcagttatgcttacaaagctagctatagttcctcttaataagctcgatttgtacatgatttgtccatattttaccttttttttttcgtcgcagtacaacaagtacatggcttgatttggttttggttatatatcttgtcatgttgtgctaatcataatgcatcatctcgaaaaggtagttttgagtagtggaatagttttgattcttgccaacagattgattagctagtgtcaacgttGATTTTTTTTTTCACTTTGCCATCTAGAATTCAGAGAACTTTTGTAGCATAATGCAACAATTTTCAATCATAGTTTGGAACTCAGGAATTTAATACAATTTAACAGATTTTTAACAGGAATCAGTATTTCCCACAACCCAAATGGTCCTCTTCTTCTCGGTGAAGAAATTAATCAATTTGATAAGATAGCAGATACGAATTACGTACTCCTTCCGTTCCAAAATATCAACTAAAATCCCATATATTTTGGGACAGAGAGTATTAATTTATCCTATATGTTTTGATTTATAAACTTATACGATAACTGAATTTCACTATTTTACTTTACCATCTAATGTTCGATGCATTACGCAAACTTTGAGTTCGGTAGTGACTCTTCCTAACCTCACCTTTTTCGTTTTTCACGCGCATACTTCCAAACTACTTAAAAAAATTCTATAGAAAAAATATTTTAAAAAATCATACTGATCTTTTTTATTATTTTTTATTTTTAGCTGATGTTTAATTAATCATGTGTTAATGAGTTGCTCCGTTTCTGTACCCAGAGAAAAATGTTCCCAACCTTCATAATCAAACACAACCTTTAATTTTGTCGGTGGCTCGGTGCACCGTACTAAATCCGGCAAGAACCTAACCCGCCCTCTTGTCATTGCAGGATGCCGGCGAGGTCACCGCCGCCACCGCCGCCGTCATCACCGAGCCGATCACGCGGTGGCCGGTGTTCGCCTACCTGGGCGGTGCGATGGCGTGCCTACTGGCGAGCACGGCGTGCCACCTCCTCCTGTGCCACTCGGAGCGCGCCAACTACGTCCaccctccgcctcgactacgccggcatcgccgcgctcatcgtcgcctccttcctccccatcgtccactactccttcctctgcgacccctggctccgctacgcctacacggccgccatcgcctgcgccggcgccgccaccgtgacggcatcgctggtgccggcattccagtcccccgggctgcgccctctccgtgccgcgctcttctccgggctggccgcgtcgggcgtcgtccccgtcgcgcacaagctggcgctctacggcggcgcggtgcgggaggcggcgacgtcggcgcggtgcgaggccgccatgggcgcgctctacgcgctcggcgttgccgtgtacgccgcgcgtgtgcccgagcggtggttccccgggcggttcgacctcgtcgggcacagccaccagctgttccacctcctcgtcgtcgccggcgcctatgcccactacctcggtgccctcgagtacctcaagtggcgggacgccgtcaaatgctga
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| CDS seq | atggagatgatgagcttggaggaggaggaaacaatggcttctcctaccacctcttcgtgtggcacatgcaaatgcggtgccaacgacgacaaggcgaagaagacgaagacgaagaagtgcgagttagtgggctatgaggagctgcccgaatggctcaaggacaacgagttcatccatggctactatcggcatttgatagggttcttgctgttcctctgcctggcaatattcacagcaatggtgatcccaagtggtgacaatcttcacagcaacagcagcagaagcaggagcaatgcaacagctatggactactactacatccatggagatctgatggtgatgagcaacatgacaagggtgctgaggcatgaggcacttgcagcagcagcctgtctcctgctgcatgatcctgcagatttGATGCCGGCGAGGTCACCGCCGCCACCGCCGCCGTCATCACCGAGCCGATCACGCGGTGGCCGGTGTTCGCCTACCTGGGCGGTGCGATGGCGTGCCTACTGGCGAGCACGGCGTGCCACCTCCTCCTGTGCCACTCGGAGCGCGCCAACTACGTCCaccctccgcctcgactacgccggcatcgccgcgctcatcgtcgcctccttcctccccatcgtccactactccttcctctgcgacccctggctccgctacgcctacacggccgccatcgcctgcgccggcgccgccaccgtgacggcatcgctggtgccggcattccagtcccccgggctgcgccctctccgtgccgcgctcttctccgggctggccgcgtcgggcgtcgtccccgtcgcgcacaagctggcgctctacggcggcgcggtgcgggaggcggcgacgtcggcgcggtgcgaggccgccatgggcgcgctctacgcgctcggcgttgccgtgtacgccgcgcgtgtgcccgagcggtggttccccgggcggttcgacctcgtcgggcacagccaccagctgttccacctcctcgtcgtcgccggcgcctatgcccactacctcggtgccctcgagtacctcaagtggcgggacgccgtcaaatgctga
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| Protein seq | MEMMSLEEEETMASPTTSSCGTCKCGANDDKAKKTKTKKCELVGYEELPEWLKDNEFIHGYYRHLIGFLLFLCLAIFTAMVIPSGDNLHSNSSRSRSNATAMDYYYIHGDLMVMSNMTRVLRHEALAAAACLLLHDPADLMPARSPPPPPPSSPSRSRGGRCSPTWAVRWRAYWRARRATSSCATRSAPTTSTLRLDYAGIAALIVASFLPIVHYSFLCDPWLRYAYTAAIACAGAATVTASLVPAFQSPGLRPLRAALFSGLAASGVVPVAHKLALYGGAVREAATSARCEAAMGALYALGVAVYAARVPERWFPGRFDLVGHSHQLFHLLVVAGAYAHYLGALEYLKWRDAVKC |
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| Function | Heptahelical transmembrane protein 4 [UniProtKB/Swiss-Prot:Q9SZG0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0014650 | OsLima_12g0014650.01 | Chr12 | 19296260 | 19299362 | + | NAM | ||
| CDS seq | atggagatgatgagcttggaggaggaggaaacaatggcttctcctaccacctcttcgtgtggcacatgcaaatgcggtgccaacgacgacaaggcgaagaagacgaagacgaagaagtgcgagttagtgggctatgaggagctgcccgaatggctcaaggacaacgagttcatccatggctactatcggcatttgatagggttcttgctgttcctctgcctggcaatattcacagcaatggtgatcccaagtggtgacaatcttcacagcaacagcagcagaagcaggagcaatgcaacagctatggactactactacatccatggagatctgatggtgatgagcaacatgacaagggtgctgaggcatgaggcacttgcagcagcagcctgtctcctgctgcatgatcctgcagatttGATGCCGGCGAGGTCACCGCCGCCACCGCCGCCGTCATCACCGAGCCGATCACGCGGTGGCCGGTGTTCGCCTACCTGGGCGGTGCGATGGCGTGCCTACTGGCGAGCACGGCGTGCCACCTCCTCCTGTGCCACTCGGAGCGCGCCAACTACGTCCaccctccgcctcgactacgccggcatcgccgcgctcatcgtcgcctccttcctccccatcgtccactactccttcctctgcgacccctggctccgctacgcctacacggccgccatcgcctgcgccggcgccgccaccgtgacggcatcgctggtgccggcattccagtcccccgggctgcgccctctccgtgccgcgctcttctccgggctggccgcgtcgggcgtcgtccccgtcgcgcacaagctggcgctctacggcggcgcggtgcgggaggcggcgacgtcggcgcggtgcgaggccgccatgggcgcgctctacgcgctcggcgttgccgtgtacgccgcgcgtgtgcccgagcggtggttccccgggcggttcgacctcgtcgggcacagccaccagctgttccacctcctcgtcgtcgccggcgcctatgcccactacctcggtgccctcgagtacctcaagtggcgggacgccgtcaaatgctga
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| Protein seq | MEMMSLEEEETMASPTTSSCGTCKCGANDDKAKKTKTKKCELVGYEELPEWLKDNEFIHGYYRHLIGFLLFLCLAIFTAMVIPSGDNLHSNSSRSRSNATAMDYYYIHGDLMVMSNMTRVLRHEALAAAACLLLHDPADLMPARSPPPPPPSSPSRSRGGRCSPTWAVRWRAYWRARRATSSCATRSAPTTSTLRLDYAGIAALIVASFLPIVHYSFLCDPWLRYAYTAAIACAGAATVTASLVPAFQSPGLRPLRAALFSGLAASGVVPVAHKLALYGGAVREAATSARCEAAMGALYALGVAVYAARVPERWFPGRFDLVGHSHQLFHLLVVAGAYAHYLGALEYLKWRDAVKC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0511200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32640 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0511200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014910 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015050 | RBH | 0.0 | 2.698635 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014950 | RBH | 0.0 | 1.162266 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014760 | RBH | 0.0 | 0.027633 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014300 | RBH | 0.0 | 2.033005 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0264500 | RBH | 0.5008355 | 0.1721915 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014510 | RBH | 0.0 | 0.0 | 0.073348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0294300 | RBH | 0.6226695 | 0.1414345 | 0.2383885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014760 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014540 | RBH | 0.0 | 0.0 | 0.0 |
