Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0013950 | OGI:07002380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:18650821-18655432 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taagaaaatagttcattaaataaagaaaatgaaaatactgacaagcttttaaaacgatagttaacactgctattcaatgtagcagttgacattcgcatgtggtaagtcaatctgtgccctccaaacaatattacaagcatatatagtagttgccaatgtactccacgcatttaaattctagtgattagcaagtgacatttacacctagaacactgagtacaaccacaaactaggttcccaggttccaaaatctgatttgtccacaaatttaagaaatgaagatggtaactgcatgcactgttgtcctatctttgacaccatttgatcttcacctaataatattagctccatgacctgagaggagaaaatgatgagcattgtgaccccaagaaaagattAaaaaaaaagacacagacacggcagccaaagaacagctgttgcagcatccagaaacaagactctgataagtttttacaggtgatcacaacaacagaaaacttccaatgtagaacagcatccagaaaatgacagcacattaggaggagaacaatgttggcccacagataagtttattttacaaagatatgacatagcaggactatggtagcttaatggcgacagtaaagcataaaaaaaaagtacagagaagttggactgatgacaacaatgtcaagctcaacaggactacaggagaaatgaaaaaaggctgatcactatcatcatgctattcatgtatatcaacataaatgaaactttaggcagaacatacctcacaaaagcacccaatctcatgtaaatcaaccctgccaatacaagaaaaccaggtaagtaggggatcagaaatgtcaaccaagtaagacagcatgctaagatgacactaatgaaaataaaatatcataatcagaaatgttactcaccatctgaagtttcagccacaaaattctagcggttggattagcactgataaagatttctctgttctgagcatccttaaaaacactaaatgcctgggcattttcctcaggggatagttcattcgttgtgctcaagacatcgatacatttcttgattgaaaattcatcaacttgctttgtagcctctttttcccgtaccatttcctcctcagcttgtttatgtcgcagctctatgtatttctccattgcatcagccacattcccattttgcttatgtctttttgggttcttctctcttttatcctcaggaggtttccttgatgtactgacagtttgtcttctttgatttaactgatttgacacttcaacttctgattgttcacttgctgtgattggatcatcattgttcaggtcatcttgattgttctccatcagcaaatcatcagcacctacttgtgtaacaatatcatcttctgtgtttcttgactgatctagtgtatttgttggctgaagggatgtaaagttcaagaggccctcggcagtttgacctattcaagaaaagaaatgcatgccgataactaagtgaaaaatagttcgaatggtttatggatagatctgagaattagtaaaataccatcatatagttctcctaaagcttcaaagattggaaatggtttgttgcggaacttcttagctcgagggaaagactgttaagttttagagatgaaaaagaaactgagttaattatgaggcaaaaggagaatatagaaagtaaaggaacatgacagaacataacaagatatatatgaggagagacaattcaacaattgcatggaattcaatagttcaagaaacttacatgaataatattatcccaaactgcaggatcatcagcaataatcatcccgagtttttcgtcccaagatgccccactttgtgttcttgcatctttcaagcacctgtagtctctcttaagctccttttctttatcttgaatttgtccttttgaaaaacaaatatgcgggaacttatcatgaaaacacacaagtcatttattacatcacatttcattacatatcatgctagattaggatgatcatgaacataatcattccacatcgccattgcaatattgtccctaataacatttccttgatgagtttgattattcagtgagttgacatcattgccatactcatcatctcccgctggaacatcaacaaaatcttcaggtgatatatggtgtggatcatgtggctgatgatcaagatccaaccatccctcattcccattgtacctcctaatcaggttgtgaaatacggcagcagctgctggtatcctaacttggttttcaatagggtgtagtgtgcctacttttaagatcgggaagcgcttcttcaaaactccaatagccctttctatgtgattacgcaataatgcatggctttgattgaacaattatttgtagtttgatgggcgccggtgaccacgaccaaactcggtaaggtgcgaggaatgaaggcgtgttggcatatccaccatcaacaaggtaaaacttgcccatcggtatgcgaaaaccatttagttgagcagacctaagcacccgggcatccgtggcagatccctcccagccacaagaaatgaatgtgaagtttaagtcaaaatcacatgctaacatcacattttggcttagtgtgctctttctattcctatatggagctgccatctcagggtttatagtgataggaacatgagtaccatcaattgctcctaagcaattctgcaagaataatataaacacataagaagatttaattttagaaataaaatattttattatacatgaatgccaagttagtattgcaccttgaagtatgggtagaagcgaggatttgatgtgatctttgaatgagtttggtttgcaagaggcggcttaatgaatctatgggtgagagtagggactatatcgaaaaatgccctaatatgtaggtggattgtcgccccactatgcttgaatttatattgcatatcttggtagctcgcattatgggatagcatatacatgaacatagcaagcttttcctccactctaactcccctagtgtcacggaccaagttcttccttcttagaaattctgcagtacttttgaagacctccggttccatacggtacgccacaaggcaattcatgacatgcccttcaagtaccagtctgggttgatgcatgcctaggtgttttctctctcccccaccaccactatccaaaagatgcacagcagggaaaaggaaaagaatcatatcatcatcctcttcctcccgcttccgacgtttagcccttgaatccattttaattccaggaactgttagacatgtgtgagatgacttctaagcacataaaagtgtgatatcaagcaaacaaatgttaacaaaaaaaaagaatcttctgagcaccaaactacaaaaaattaacagataacagaaggttgcagttaatgtcaaaggtagtaatgactattctgtacttctgtagattagattacaaagcataaaaaagataaacagcagagcatatctttgataaacaacagagctttcttctattttacatttgaaggactatatagtgcaattccgtcgattcagagaatgacttaattccatgtggtaatgtgagtgttaatttccattctgcaaggctaaataaagatttttctctaatttctatgtgtatattgacctgattaactatatatccagagaatgaaagaaaaatgcagcatactgtcagttactacgttgaagtgtaaccttcaacagaaatataataaatgaacagatgcatgttctttcagaaatccatagcaatgaaccacagaaacatctgttcggaaataaagggacaaaacctgattactctcctttcaatatatcttgatcaacataaaaggaaaggaagaaaatattttccttcgaatgaacattatgtcagacatctagaatttgttactatcatctcccatagtaaattacccattttaattccaggaattgacaaagcaagtttgggtgcttcacaggatcatgaagaattctaattaatacacaaaccgtatcaagtttgttagggcaaaaattaagagtatatcatggatcaacagagatgctcaagctttatctacacgagcatcaggaattaatacacagagccacaacttatacagagctgcacagattatgcctagagatttcacaagtaaaattagcacaagattacctagcccaagattaactatccgcaacataatcgatcagatctagcccaagatttcaccttcccaaccaccaaaccaatcaattcaggagaaggatggaatttggcatacctagacaagctggtagaagatgacgacgaggtcctggaggttcttgttggggacgaggtcctggatggtggagaccgaacggagaaggccacaccgatgttgaactccggcagatctgacgagaggcggcgtcgtttccggcgagaggaggaggccgaagtgacggcaggcgccggcgtgagcagatgcgcggcccaccgccggcacgcgatgggatgagcagcggcggcgcgggcgtggcccaccgcggcgcgcgtctggacaagcagcggcggcgcgggcgccgctctagtcgagaagaggcagcggtgtggt
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| CDS seq | atggagaacaatcaagatgacctgaacaatgatgatccaatcacagcaagtgaacaatcagaagttgaagtgtcaaatcagttaaatcaaagaagacaaactgtcagtacatcaaggaaacctcctgaggataaaagagagaagaacccaaaaagacataagcaaaatgggaatgtggctgatgcaatggagaaatacatagagctgcgacataaacaagctgaggaggaaatggtacgggaaaaagaggctacaaagcaagttgatgaattttcaatcaagaaatgtatcgatgtcttgagcacaacgaatgaactatcccctgaggaaaatgcccaggcatttagtgtttttaaggatgctcagaacagagaaatctttatcagtgctaatccaaccgctagaattttgtggctgaaacttcagatgggttga
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| Protein seq | MENNQDDLNNDDPITASEQSEVEVSNQLNQRRQTVSTSRKPPEDKREKNPKRHKQNGNVADAMEKYIELRHKQAEEEMVREKEATKQVDEFSIKKCIDVLSTTNELSPEENAQAFSVFKDAQNREIFISANPTARILWLKLQMG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013950 | OsLima_12g0013950.01 | Chr12 | 18650821 | 18652166 | - | NAM | ||
| CDS seq | atggagaacaatcaagatgacctgaacaatgatgatccaatcacagcaagtgaacaatcagaagttgaagtgtcaaatcagttaaatcaaagaagacaaactgtcagtacatcaaggaaacctcctgaggataaaagagagaagaacccaaaaagacataagcaaaatgggaatgtggctgatgcaatggagaaatacatagagctgcgacataaacaagctgaggaggaaatggtacgggaaaaagaggctacaaagcaagttgatgaattttcaatcaagaaatgtatcgatgtcttgagcacaacgaatgaactatcccctgaggaaaatgcccaggcatttagtgtttttaaggatgctcagaacagagaaatctttatcagtgctaatccaaccgctagaattttgtggctgaaacttcagatgggttga
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| Protein seq | MENNQDDLNNDDPITASEQSEVEVSNQLNQRRQTVSTSRKPPEDKREKNPKRHKQNGNVADAMEKYIELRHKQAEEEMVREKEATKQVDEFSIKKCIDVLSTTNELSPEENAQAFSVFKDAQNREIFISANPTARILWLKLQMG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013950 | OsLima_12g0013950.02 | Chr12 | 18650864 | 18655432 | - | IsoSeq | ||
| CDS seq | ccacaccgctgcctcttctcgactagagcggcgcccgcgccgccgctgcttgtccagacgcgcgccgcggtgggccacgcccgcgccgccgctgctcatcccatcgcgtgccggcggtgggccgcgcatctgctcacgccggcgcctgccgtcacttcggcctcctcctctcgccggaaacgacgccgcctctcgtcagatctgccggagttcaacatcggtgtggccttctccgttcggtctccaccatccaggacctcgtccccaacaagaacctccaggacctcgtcgtcatcttctaccagcttgtctaggacaaattca
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| Protein seq | PHRCLFSTRAAPAPPLLVQTRAAVGHARAAAAHPIACRRWAAHLLTPAPAVTSASSSRRKRRRLSSDLPEFNIGVAFSVRSPPSRTSSPTRTSRTSSSSSTSLSRTNS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.326174 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0299650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0299650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020010 | SBH | 1.283585 | 11.184737 | 5.196801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014340 | RBH | 0.303717 | 1.476910 | 3.884063 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014230 | RBH | 3.694804 | 5.310570 | 13.197248 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019750 | SBH | 0.092796 | 0.277661 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013660 | RBH | 7.943237 | 2.380155 | 10.163178 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0257800 | RBH | 2.631697 | 12.1163335 | 13.5896915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013840 | RBH | 0.339466 | 0.0 | 0.980447 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0282200 | RBH | 1.2042185 | 0.166327 | 2.7485095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014120 | RBH | 2.363586 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019660 | SBH | 0.243978 | 0.0 | 1.175460 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014210 | RBH | 0.332069 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
