Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0013360 | OGI:12049870 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:17957438-17960539 | ||||||||
| Gene Symbol | RGA2 | ||||||||||
| DNA seq | atgagaacacgtcgagcgcccaacggcccaagacgcgacgcgacgcgacgccgtggcctcgccggcggcgtcagctcgtcggtgtcgccgccgcttgctgttggccggcaatggcgcggaggcgccccaagagcacgcgcgtacgggcttcctcatcgcgggtggtgcctggctcgtcccatccgtcgcacctcccccctggtgttcacagttctcaccGctgccacagttctcgccgtcgccggcaggcacaccaaaggccgtagcgcgggcacggcggccggccaccgtgcaggtgatcttcgctctccctagcttgaatcgaaaaatttggggagCataccactcacggaccgcccccaatcaccttctcactgtaggtcgcgatacagtttcccatccgattggggatggggtgctgtgtgtgtaatttagttgatttcatatgtgaatcgaccaaatgacatcaccactggagtgcggattttgtgccggattcctgcgtttcagtgccatatgggagcacgagcatgagcatgggactccggatgtgcatccgagaaattgcacacaagacacagatgcatatgcagtgttgattactgcttctgcttgcgtgttcaggtggttggtagatcagacaacactacttcgaatatggtttttcatcctttctagggctgcaatattgtagtactaattgtcttgcaaagcattgtgtatgtatgcaatcagcgattgtaccacctttcttgctttttgttttttcttaaaaatggttatgctttacatggacagacagtgagttgcttggctcctttgcctctcggggttgcggaggcatttatgaattgggcacaatattacttattcaggggaaggggggaacaaacgattcatacaaatcctcttttgacagtatgggatttctcgctcaaatctagaagaacaagaacaacaaggagaaaaatagaatatggatatttacgttcttttatctgcaacttcctggcatttttcatgtgtattttgaagcctgaacaagtgtgcttcacacttcacaaataggtgcttcctcttgatatgttcccgtttgatttgttatgtcaatatatgacggattctcttctaactatttccatgcatagatcaggtgagtacacaaagtgcgtagaactagctgctgttctctgcaatttgaccattggagtttcactctagtagtatgtatactaggtaagcttatgctaatggtgcaataatgaacattctgtatatAaaaaacttacaaccttgtcatggtcccaaattatcttctgttccaagatcttatattgctcaatttccctatgatcttaactcaagtcagcaagaaatacattaagcatgagctggggtgctgctgtcatggagcttgtgactggagccaatgcatggagtgaaaacTttacctgtgttactttagttgtttcatctgcattctctgatggataaggtcagttgggaattcttcaaacttcaagcgtttggttctaggagttctaacaacaacctggaaatggaggaaagaggtaaaactttgttcacaaactgaagggttctccttttgctgccAaaactattgggcatttgatgagaaggaatctagacactacgcattggagcaATatattgaatagtggactgtggaagtgggatataatggaaatatttacaagatgactaacgcaggagaaaaagaaagcatccaaagaaaattgaacccattgtagccaatcaagaacagagatcgtaagagattctttcatcccttggtgaggtattatctcttggtggacttattgtatgttcagataatgctgatcttggtaaattggtccttggttactccgatttgttggatattagatttatcttctacgggatcttgttctaattatcatcttattagaatccatccatgttagcagtattactttgcaagattaaagagctctttatatttttctgaatgtgatggtacatcatatgttgcttcttgatgttactaatttatttggaggcttcatggttgacctattggatcaattttgtcgtggtgttagtacaatggtatcaatattattctgttgttcgatccaattggctcaaaacaatgagctggtatgAacccacagttttagactgcaatatcagaaggtacatcagccatgattgagatggaatatgactccacagtattttattctttggccatcgtgtagttattggtggtacaatgaTttacaatggtatctatgtgttgtttttgtgtgtgtgtgtgtttgttgtttattttcagaaggagcctttattgctgttttttttctctcttccttgctccttaatcacctgtaagaattgggagcggcagattgaaggcaaagcgcaagtgctttgctttttcttggagtgtttctcaggtaattggaggttctattcatcattttaccagttgagcctgtaatccgtaaaaccaacactgttattgtgtttgtttgtttttgtttttttttttttttttttttgcggggggctgttattgtgtgttaccatatgttttactgaacaaatgtttgcttctaacatcaaatggctacaattctgtcagcatctatgggttcaggttaattataagctgccatctatccctattggtgatctgtattatgtactgtctttcgccCTctaaaagtgttttcttgaaacaatttgctgatgttgcgattgagactctatgcaactacaagttgttcctgtttttttctggatctggctgagtttgaatattgaattgcgtggaatgtgtttcattgaaatgtaattcagcaaaactttcaagagcattatgttattacttagaacacatatataaaaTttttattcaccaattatttttcgtttacaaatacgccgtttcgcttattccccgaataagtgaatcgatggggctggtagtgtctgtggtttgcaCTccatatgtctccgtgacatttttctcttccttttgcttttgtgaagacataataaaaaattttcttgctcttgcaggaatatgtgtga
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| CDS seq | atgagaacacgtcgagcgcccaacggcccaagacgcgacgcgacgcgacgccgtggcctcgccggcggcgtcagctcgtcggtgtcgccgccgcttgctgttggccggcaatggcgcggaggcgccccaagagcacgcgcgtacgggcttcctcatcgcgggtggtgcctggctcgtcccatccgtcgcacctcccccctggtgttcacagttctcaccGctgccacagttctcgccgtcgccggcaggcacaccaaaggccgtagcgcgggcacggcggccggccaccgtgcagttgggaattcttcaaacttcaagcgtttggttctaggagttctaacaacaacctggaaatggaggaaagaggaatatgtgtga |
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| Protein seq | MRTRRAPNGPRRDATRRRGLAGGVSSSVSPPLAVGRQWRGGAPRARAYGLPHRGWCLARPIRRTSPLVFTVLTAATVLAVAGRHTKGRSAGTAAGHRAVGNSSNFKRLVLGVLTTTWKWRKEEYV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013360 | OsLima_12g0013360.01 | Chr12 | 17957438 | 17960539 | + | NAM | ||
| CDS seq | atgagaacacgtcgagcgcccaacggcccaagacgcgacgcgacgcgacgccgtggcctcgccggcggcgtcagctcgtcggtgtcgccgccgcttgctgttggccggcaatggcgcggaggcgccccaagagcacgcgcgtacgggcttcctcatcgcgggtggtgcctggctcgtcccatccgtcgcacctcccccctggtgttcacagttctcaccGctgccacagttctcgccgtcgccggcaggcacaccaaaggccgtagcgcgggcacggcggccggccaccgtgcagttgggaattcttcaaacttcaagcgtttggttctaggagttctaacaacaacctggaaatggaggaaagaggaatatgtgtga
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| Protein seq | MRTRRAPNGPRRDATRRRGLAGGVSSSVSPPLAVGRQWRGGAPRARAYGLPHRGWCLARPIRRTSPLVFTVLTAATVLAVAGRHTKGRSAGTAAGHRAVGNSSNFKRLVLGVLTTTWKWRKEEYV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013690 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013870 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013750 | RBH | 0.0 | 0.991276 | 0.671238 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013230 | RBH | 1.650108 | 0.000000 | 2.047944 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0251600 | RBH | 0.4776605 | 1.463108 | 0.745972 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013390 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0273600 | RBH | 0.77282 | 0.7193115 | 2.3327725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
