Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0012550 | OGI:12048010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:16948522-16950810 | ||||||||
| Gene Symbol | RGA2 | ||||||||||
| DNA seq | atggaaaagctgagaaactcattgaaggctatttgcgctgttcttaaagatgctgaaaggaagcaatctacatctagttcacttaaacattggctggaaaacctcaaagacgttgtctacgacatagatgatgttctcgatgacgttgggacacgagcattgcagcagaaagttggaaaaggtgaaatccgtacttattttgctcaactatgcatttttccttttgaactgggaagaaagataagaagggttcgtgaaaggctaaatgaaatatctgcacttaaaagaaattttgatttgaaagaagaaccaatagacacaccttcagattgagttgtacagagagaaacatactccattgtagatgagcgaaagattgttgggagagataaagctaaaaatgatattgtgaaggtgatttcagaagctgctgaatctaattctgatacacagtcagtgcttccactaattggaatgggaggtgtaggcaagactgccctagcaaaactggtatttaatgacaaacgaaccaaagaaaagtttgataagatgctatgggcatgtgtagctaatgtgtctgatcttaaacatatagtagatataatcatacaatcagatagcggtgaaagcaacaagcaattaaccctagaagcactacaaaagaaacttcatgagcttttaggagataagagatacttgctagtgttagacgacatatcacatgataacattaatgattgggaagaattgatgaacctgctaccgagtggtagaagtggaagcatgattttaatcaccacacgtctttcaaaaattgcatcagtattgaaaaccttagagccatatgaagtgccaaaactttcacatgaagaatgcatgaaagtatttgctcgatatgcattcaaaggagagaaggcaaaggatactgagttactaaaaattggagaatccattgtacagaaatgtgatggtcttcctttagcagttaggactctgggatccctattgtctatggaagatatctctaagtggcaagaagttaaggaaacaaatatcccaaacacagatatcttgtcagttttaaaactgagttatgatgcacttccatctgatttaagagcatgttttgtcagcttatccacttttccaaaggactatgagattttcagagaacttttaataatgtattggatggcaatgggtctgttgaatacagctagtggaagtaaggaggcaataagaacgggagagagatattttagtgagcttgcagggaaatctcttttccaagactatgtttttagtcatgatggcaccatctcacattgtaaaatgcatagctttgttcatgacctagcaatatctgtatctcccaatgagcatgcaacaattagctgtgaaaactttagtgcctccaaaagagttaagcatcttgtgtgggaccagaaggagttctcaaaggacctaaaatttccaaaacaactgagaagggcagggaaggcaaggacatttgcgagtaggcacaactatggtactgtgagcaaatcctttcttgaagatctcttggcaacctttacacgcctacgaatcttggttttctctgaagttgagtttgaggagttaccaagttcaattggaaatttgaagcacctaaggtacctagatctgcaatggaatatgaagatcaaatacgtgcccaattctctgtgtaagctggtgaatttgcaaacacttcagcttgcttggtgcaaagaactggaggagctgccaagagatgttaaaaaacttgtcagcttgaggtacttaatcctcacatctaagcaacattatcttcctaatgatgccctcatgggttggacttccatggtatttctacagattagtgcctgcccaatgttaacatcactgacagaaggatttggcagcctcagtgtacttcgagagctatttgtctttaattgtccaaatttgccctctctcccctctagcatgaaccggttagtcacccttcagaaattggtgattcataactgtgatgagttaaatttgatggaaccaaaggaagcaatgggtggaatgaagagtctcaaatcaattgaacttgtggggcttccaaagtttgagacctttccagatagctttgcatcagctgcttccactcttgaatacctgaaggttagtgactgcaaagaattcaagaagttgccagatttcatccagagattttcttctctgaagaaaattgagatccctgaaaggcgtcaatattccagtataacctgggcatag
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| CDS seq | atggaaaagctgagaaactcattgaaggctatttgcgctgttcttaaagatgctgaaaggaagcaatctacatctagttcacttaaacattggctggaaaacctcaaagacgttgtctacgacatagatgatgttctcgatgacgttgggacacgagcattgcagcagaaagttggaaaagatgagcgaaagattgttgggagagataaagctaaaaatgatattgtgaaggtgatttcagaagctgctgaatctaattctgatacacagtcagtgcttccactaattggaatgggaggtgtaggcaagactgccctagcaaaactggtatttaatgacaaacgaaccaaagaaaagtttgataagatgctatgggcatgtgtagctaatgtgtctgatcttaaacatatagtagatataatcatacaatcagatagcggtgaaagcaacaagcaattaaccctagaagcactacaaaagaaacttcatgagcttttaggagataagagatacttgctagtgttagacgacatatcacatgataacattaatgattgggaagaattgatgaacctgctaccgagtggtagaagtggaagcatgattttaatcaccacacgtctttcaaaaattgcatcagtattgaaaaccttagagccatatgaagtgccaaaactttcacatgaagaatgcatgaaagtatttgctcgatatgcattcaaaggagagaaggcaaaggatactgagttactaaaaattggagaatccattgtacagaaatgtgatggtcttcctttagcagttaggactctgggatccctattgtctatggaagatatctctaagtggcaagaagttaaggaaacaaatatcccaaacacagatatcttgtcagttttaaaactgagttatgatgcacttccatctgatttaagagcatgttttgtcagcttatccacttttccaaaggactatgagattttcagagaacttttaataatgtattggatggcaatgggtctgttgaatacagctagtggaagtaaggaggcaataagaacgggagagagatattttagtgagcttgcagggaaatctcttttccaagactatgtttttagtcatgatggcaccatctcacattgtaaaatgcatagctttgttcatgacctagcaatatctgtatctcccaatgagcatgcaacaattagctgtgaaaactttagtgcctccaaaagagttaagcatcttgtgtgggaccagaaggagttctcaaaggacctaaaatttccaaaacaactgagaagggcagggaaggcaaggacatttgcgagtaggcacaactatggtactgtgagcaaatcctttcttgaagatctcttggcaacctttacacgcctacgaatcttggttttctctgaagttgagtttgaggagttaccaagttcaattggaaatttgaagcacctaaggtacctagatctgcaatggaatatgaagatcaaatacgtgcccaattctctgtgtaagctggtgaatttgcaaacacttcagcttgcttggtgcaaagaactggaggagctgccaagagatgttaaaaaacttgtcagcttgaggtacttaatcctcacatctaagcaacattatcttcctaatgatgccctcatgggttggacttccatggtatttctacagattagtgcctgcccaatgttaacatcactgacagaaggatttggcagcctcagtgtacttcgagagctatttgtctttaattgtccaaatttgccctctctcccctctagcatgaaccggttagtcacccttcagaaattggtgattcataactgtgatgagttaaatttgatggaaccaaaggaagcaatgggtggaatgaagagtctcaaatcaattgaacttgtggggcttccaaagtttgagacctttccagatagctttgcatcagctgcttccactcttgaatacctgaaggttagtgactgcaaagaattcaagaagttgccagatttcatccagagattttcttctctgaagaaaattgagatccctgaaaggcgtcaatattccagtataacctgggcatag
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| Protein seq | MEKLRNSLKAICAVLKDAERKQSTSSSLKHWLENLKDVVYDIDDVLDDVGTRALQQKVGKDERKIVGRDKAKNDIVKVISEAAESNSDTQSVLPLIGMGGVGKTALAKLVFNDKRTKEKFDKMLWACVANVSDLKHIVDIIIQSDSGESNKQLTLEALQKKLHELLGDKRYLLVLDDISHDNINDWEELMNLLPSGRSGSMILITTRLSKIASVLKTLEPYEVPKLSHEECMKVFARYAFKGEKAKDTELLKIGESIVQKCDGLPLAVRTLGSLLSMEDISKWQEVKETNIPNTDILSVLKLSYDALPSDLRACFVSLSTFPKDYEIFRELLIMYWMAMGLLNTASGSKEAIRTGERYFSELAGKSLFQDYVFSHDGTISHCKMHSFVHDLAISVSPNEHATISCENFSASKRVKHLVWDQKEFSKDLKFPKQLRRAGKARTFASRHNYGTVSKSFLEDLLATFTRLRILVFSEVEFEELPSSIGNLKHLRYLDLQWNMKIKYVPNSLCKLVNLQTLQLAWCKELEELPRDVKKLVSLRYLILTSKQHYLPNDALMGWTSMVFLQISACPMLTSLTEGFGSLSVLRELFVFNCPNLPSLPSSMNRLVTLQKLVIHNCDELNLMEPKEAMGGMKSLKSIELVGLPKFETFPDSFASAASTLEYLKVSDCKEFKKLPDFIQRFSSLKKIEIPERRQYSSITWA |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0012550 | OsLima_12g0012550.01 | Chr12 | 16948522 | 16950810 | + | NAM | ||
| CDS seq | atggaaaagctgagaaactcattgaaggctatttgcgctgttcttaaagatgctgaaaggaagcaatctacatctagttcacttaaacattggctggaaaacctcaaagacgttgtctacgacatagatgatgttctcgatgacgttgggacacgagcattgcagcagaaagttggaaaagatgagcgaaagattgttgggagagataaagctaaaaatgatattgtgaaggtgatttcagaagctgctgaatctaattctgatacacagtcagtgcttccactaattggaatgggaggtgtaggcaagactgccctagcaaaactggtatttaatgacaaacgaaccaaagaaaagtttgataagatgctatgggcatgtgtagctaatgtgtctgatcttaaacatatagtagatataatcatacaatcagatagcggtgaaagcaacaagcaattaaccctagaagcactacaaaagaaacttcatgagcttttaggagataagagatacttgctagtgttagacgacatatcacatgataacattaatgattgggaagaattgatgaacctgctaccgagtggtagaagtggaagcatgattttaatcaccacacgtctttcaaaaattgcatcagtattgaaaaccttagagccatatgaagtgccaaaactttcacatgaagaatgcatgaaagtatttgctcgatatgcattcaaaggagagaaggcaaaggatactgagttactaaaaattggagaatccattgtacagaaatgtgatggtcttcctttagcagttaggactctgggatccctattgtctatggaagatatctctaagtggcaagaagttaaggaaacaaatatcccaaacacagatatcttgtcagttttaaaactgagttatgatgcacttccatctgatttaagagcatgttttgtcagcttatccacttttccaaaggactatgagattttcagagaacttttaataatgtattggatggcaatgggtctgttgaatacagctagtggaagtaaggaggcaataagaacgggagagagatattttagtgagcttgcagggaaatctcttttccaagactatgtttttagtcatgatggcaccatctcacattgtaaaatgcatagctttgttcatgacctagcaatatctgtatctcccaatgagcatgcaacaattagctgtgaaaactttagtgcctccaaaagagttaagcatcttgtgtgggaccagaaggagttctcaaaggacctaaaatttccaaaacaactgagaagggcagggaaggcaaggacatttgcgagtaggcacaactatggtactgtgagcaaatcctttcttgaagatctcttggcaacctttacacgcctacgaatcttggttttctctgaagttgagtttgaggagttaccaagttcaattggaaatttgaagcacctaaggtacctagatctgcaatggaatatgaagatcaaatacgtgcccaattctctgtgtaagctggtgaatttgcaaacacttcagcttgcttggtgcaaagaactggaggagctgccaagagatgttaaaaaacttgtcagcttgaggtacttaatcctcacatctaagcaacattatcttcctaatgatgccctcatgggttggacttccatggtatttctacagattagtgcctgcccaatgttaacatcactgacagaaggatttggcagcctcagtgtacttcgagagctatttgtctttaattgtccaaatttgccctctctcccctctagcatgaaccggttagtcacccttcagaaattggtgattcataactgtgatgagttaaatttgatggaaccaaaggaagcaatgggtggaatgaagagtctcaaatcaattgaacttgtggggcttccaaagtttgagacctttccagatagctttgcatcagctgcttccactcttgaatacctgaaggttagtgactgcaaagaattcaagaagttgccagatttcatccagagattttcttctctgaagaaaattgagatccctgaaaggcgtcaatattccagtataacctgggcatag
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| Protein seq | MEKLRNSLKAICAVLKDAERKQSTSSSLKHWLENLKDVVYDIDDVLDDVGTRALQQKVGKDERKIVGRDKAKNDIVKVISEAAESNSDTQSVLPLIGMGGVGKTALAKLVFNDKRTKEKFDKMLWACVANVSDLKHIVDIIIQSDSGESNKQLTLEALQKKLHELLGDKRYLLVLDDISHDNINDWEELMNLLPSGRSGSMILITTRLSKIASVLKTLEPYEVPKLSHEECMKVFARYAFKGEKAKDTELLKIGESIVQKCDGLPLAVRTLGSLLSMEDISKWQEVKETNIPNTDILSVLKLSYDALPSDLRACFVSLSTFPKDYEIFRELLIMYWMAMGLLNTASGSKEAIRTGERYFSELAGKSLFQDYVFSHDGTISHCKMHSFVHDLAISVSPNEHATISCENFSASKRVKHLVWDQKEFSKDLKFPKQLRRAGKARTFASRHNYGTVSKSFLEDLLATFTRLRILVFSEVEFEELPSSIGNLKHLRYLDLQWNMKIKYVPNSLCKLVNLQTLQLAWCKELEELPRDVKKLVSLRYLILTSKQHYLPNDALMGWTSMVFLQISACPMLTSLTEGFGSLSVLRELFVFNCPNLPSLPSSMNRLVTLQKLVIHNCDELNLMEPKEAMGGMKSLKSIELVGLPKFETFPDSFASAASTLEYLKVSDCKEFKKLPDFIQRFSSLKKIEIPERRQYSSITWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0209901 | SBH | 10.624657 | 7.397429 | 10.810076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g29280 | SBH | 0.137758 | 0.0 | 0.063871 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0489800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013050 | SBH | 0.148129 | 8.317088 | 5.414532 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013160 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013070 | SBH | 0.0 | 0.0 | 0.021036 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012830 | SBH | 0.059502 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012560 | SBH | 0.655090 | 1.292716 | 1.410530 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0241700 | SBH | 1.1415525 | 5.387933 | 0.916849 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012750 | SBH | 0.0 | 0.0 | 0.096704 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0260900 | SBH | 1.139492 | 2.0067285 | 0.7385245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012910 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012770 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012740 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012990 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012690 | SBH | 0.382735 | 1.313537 | 1.288123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012560 | SBH | 0.099196 | 3.278061 | 0.491494 |
