Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0011870 | OGI:12043220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:15639201-15642360 | ||||||||
| Gene Symbol | CRL4, CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP | ||||||||||
| DNA seq | gttgatcgcgcggacgacacccccatgtcgtggacgcagagcgctaaggacggctgccgcagccgagccaaggcatcagcggatcgagcgattctgctctgcggggagccccgacgactggggcggggttggaggaggagaacagcacggctgcctggcttgcctggttgtggctgctgctgctaccgttgaagctgtcggttcaccggcagcgcctgccActggatggcgctactgctctgggtgttcagctgctcgctcttctccttgtggatcctctcgttcatgaggtcccaggccaccgaggcgcgccacgggacgctcgccgtcatgtgcgacgagcgcgcccggatcctccaggaccaggtgaaggtgagcatgaaccacctccaggcgctcgccatccttgtctccaccttccaccactccaagagcccgtccgccatcgaccagaccacattcgcgcggtacgtggagcgcaccgcgttcgagcgtccgctgacgagcgggctggcgtacgccgctcgggtGacgcactcggagcgggagctgttcgagcggcagcaagcgtggagcatcagagcgatgaacttctcctccaaacggccgcgggcggaggagtacgccccggtcatcttcgcgcaggacgcctacaagcacgtcgtctccatcgacatgctctcgggggcagaagaccgtggaaatctactgcgagcgagagaatcaggcaaggttgttctaactgctcctttccagctgctcaataaacgcatcggagtggtcctgacgtacgcagtgtacaagtctgagcttcccctgaatgcgacggtgcatgatcgtatacagtcttctataggatacttgggtggtgtctttgacatagaaggacatgttgataagttgcttgaaaagcttgcaggcaaagagcccatgacggtgaacatatAcgacactaccggtgagagcatgattcgtatgtatggttcttcgaatgaatcagccagtggcatgtgtcatgtcagcaCGctcgacttcggtgatccattaaggaagcacgagatgcattgcaggttcacgcaagggccaccttggccatggctggcagtagcatcatcgtacggaaccctcgtgatttctttacttgttggatacatctttcattttactgacaaatggattgccaaagtggaagatggttacaaggcgactgacatgcagatgccagcaaaggatgaattcgcggccacagagaggatttcagatatggaaagagatctgaaggaagatgctctgtttttcgacacgaccaaaagccccagtctgttggagatctcgcgtctgctgaaccatcgtgatccagctcagaatgttcaccaggaggagcaagagctcaaccttccAttggaggcgcaagacaaactgaaagagactgagaggaagctggggaggatgtccaagttcattacaaaggttatgaaattaactagcgctagcattcgctgtttaccttctcgatttcactgcttcaacaagaaggtatggagcattagccttctcggatttttactcttcattcttgtcattggagcttttgatcagccatacaatcaacctttgggcacgggaggggagggtgacaataacatgatgctgaagaattttgggttctctcgtggaaggttgttaattgatacgctccatggtacatggactaaacgcggtgtgcagagtagtgacacgatcagggttgatctcagaaagatgacagggaataatgacagttctgggcagcagctcaagcactggtcttcacataagtcaagtgagatcccggctgtcctgtatgttccgatgaatggaaagcaagttatagtccactgcaatctaattgtagatgagaaagcattggtaaattggatatcaaatggtgatactgatcagtcaagcaagtatcagaaagaaactgcagggatacaaaacagaacagacaagcctcacctgccagcaaacaagtcacacaaaacaacagtaagcccgtggattgtcttacttccagttttcatgcttgtactccttggcagtattatatggcgccggtgcaacgaccataggaGgagagttcaacaaaaagagctggaacttttgggaataatggggcctagtcgattccaactacaagatctggtagccgcaacgggcaatttcgcagatgagaacaagctcgggcaaggagggtttggccctgtgtacaaaggctacttgagggaccaggaccttcatgtggccatcaaggtgttgtccagaaggcaatcttgtcaagaacaatcggcgcaagggttgagggagttcaaggcagaggtgaaagtcatgacgcaactgaggcacagaaacattgtcaagcttgtgggctggagcgacagcaagaaacagctccttctcgtttatgaacttatggctcaaggaagccttgacaagcatctctacgaccctgagaaaattttaacttggcaacaaaggtaccaaattaaatttgctaacctgtttaattcaactggcaatttctttactcgtgtcaaaattggctctgctaggtacaagattgtacttgatctgggctctgctttgctctacctccaccatgactgcgagaaatgcattgtgcatggagacatcaagcctgcaaatgtaatgcttgatgtgtcacacaatgctaagcttggtgacttcgggttagcaaggcttgttgagcatgggggagagccacaaacaacacaagttgtcacagggacccctggatacattgacccagaattcatcaacaaccgctggcctcgcaccgaattggatgtgtacagcttcggtattgtcctcttagagatagcttgtggcaagcggccggcatcgaggcagctgccaaatggagcttcatcactgctagcctgggtgcgtgatttgtatgaccagggcaagattcttgacgcagcagatcagaggctgaacggcgagttcaatcagcagcaaatggagcgtgtgatcgtcatgggtctctgctgttcacatcaagacccgatccacactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtcccggttgcaataaaaaccggggctaaaaatgatctt
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| CDS seq | atggcgctactgctctgggtgttcagctgctcgctcttctccttgtggatcctctcgttcatgaggtcccaggccaccgaggcgcgccacgggacgctcgccgtcatgtgcgacgagcgcgcccggatcctccaggaccaggtgaaggtgagcatgaaccacctccaggcgctcgccatccttgtctccaccttccaccactccaagagcccgtccgccatcgaccagaccacattcgcgcggtacgtggagcgcaccgcgttcgagcgtccgctgacgagcgggctggcgtacgccgctcgggtGacgcactcggagcgggagctgttcgagcggcagcaagcgtggagcatcagagcgatgaacttctcctccaaacggccgcgggcggaggagtacgccccggtcatcttcgcgcaggacgcctacaagcacgtcgtctccatcgacatgctctcgggggcagaagaccgtggaaatctactgcgagcgagagaatcaggcaaggttgttctaactgctcctttccagctgctcaataaacgcatcggagtggtcctgacgtacgcagtgtacaagtctgagcttcccctgaatgcgacggtgcatgatcgtatacagtcttctataggatacttgggtggtgtctttgacatagaaggacatgttgataagttgcttgaaaagcttgcaggcaaagagcccatgacggtgaacatatAcgacactaccggtgagagcatgattcgtatgtatggttcttcgaatgaatcagccagtggcatgtgtcatgtcagcaCGctcgacttcggtgatccattaaggaagcacgagatgcattgcaggttcacgcaagggccaccttggccatggctggcagtagcatcatcgtacggaaccctcgtgatttctttacttgttggatacatctttcattttactgacaaatggattgccaaagtggaagatggttacaaggcgactgacatgcagatgccagcaaaggatgaattcgcggccacagagaggatttcagatatggaaagagatctgaaggaagatgctctgtttttcgacacgaccaaaagccccagtctgttggagatctcgcgtctgctgaaccatcgtgatccagctcagaatgttcaccaggaggagcaagagctcaaccttccAttggaggcgcaagacaaactgaaagagactgagaggaagctggggaggatgtccaagttcattacaaaggttatgaaattaactagcgctagcattcgctgtttaccttctcgatttcactgcttcaacaagaaggtatggagcattagccttctcggatttttactcttcattcttgtcattggagcttttgatcagccatacaatcaacctttgggcacgggaggggagggtgacaataacatgatgctgaagaattttgggttctctcgtggaaggttgttaattgatacgctccatggtacatggactaaacgcggtgtgcagagtagtgacacgatcagggttgatctcagaaagatgacagggaataatgacagttctgggcagcagctcaagcactggtcttcacataagtcaagtgagatcccggctgtcctgtatgttccgatgaatggaaagcaagttatagtccactgcaatctaattgtagatgagaaagcattggtaaattggatatcaaatggtgatactgatcagtcaagcaagtatcagaaagaaactgcagggatacaaaacagaacagacaagcctcacctgccagcaaacaagtcacacaaaacaacagtaagcccgtggattgtcttacttccagttttcatgcttgtactccttggcagtattatatggcgccggtgcaacgaccataggaGgagagttcaacaaaaagagctggaacttttgggaataatggggcctagtcgattccaactacaagatctggtagccgcaacgggcaatttcgcagatgagaacaagctcgggcaaggagggtttggccctgtgtacaaaggctacttgagggaccaggaccttcatgtggccatcaaggtgttgtccagaaggcaatcttgtcaagaacaatcggcgcaagggttgagggagttcaaggcagaggtgaaagtcatgacgcaactgaggcacagaaacattgtcaagcttgtgggctggagcgacagcaagaaacagctccttctcgtttatgaacttatggctcaaggaagccttgacaagcatctctacgaccctgagaaaattttaacttggcaacaaaggtacaagattgtacttgatctgggctctgctttgctctacctccaccatgactgcgagaaatgcattgtgcatggagacatcaagcctgcaaatgtaatgcttgatgtgtcacacaatgctaagcttggtgacttcgggttagcaaggcttgttgagcatgggggagagccacaaacaacacaagttgtcacagggacccctggatacattgacccagaattcatcaacaaccgctggcctcgcaccgaattggatgtgtacagcttcggtattgtcctcttagagatagcttgtggcaagcggccggcatcgaggcagctgccaaatggagcttcatcactgctagcctgggtgcgtgatttgtatgaccagggcaagattcttgacgcagcagatcagaggctgaacggcgagttcaatcagcagcaaatggagcgtgtgatcgtcatgggtctctgctgttcacatcaagacccgatccacactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtcccggttgcaataaaaaccggggctaa
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| Protein seq | MALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILVSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMNFSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPFQLLNKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESMIRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGYKATDMQMPAKDEFAATERISDMERDLKEDALFFDTTKSPSLLEISRLLNHRDPAQNVHQEEQELNLPLEAQDKLKETERKLGRMSKFITKVMKLTSASIRCLPSRFHCFNKKVWSISLLGFLLFILVIGAFDQPYNQPLGTGGEGDNNMMLKNFGFSRGRLLIDTLHGTWTKRGVQSSDTIRVDLRKMTGNNDSSGQQLKHWSSHKSSEIPAVLYVPMNGKQVIVHCNLIVDEKALVNWISNGDTDQSSKYQKETAGIQNRTDKPHLPANKSHKTTVSPWIVLLPVFMLVLLGSIIWRRCNDHRRRVQQKELELLGIMGPSRFQLQDLVAATGNFADENKLGQGGFGPVYKGYLRDQDLHVAIKVLSRRQSCQEQSAQGLREFKAEVKVMTQLRHRNIVKLVGWSDSKKQLLLVYELMAQGSLDKHLYDPEKILTWQQRYKIVLDLGSALLYLHHDCEKCIVHGDIKPANVMLDVSHNAKLGDFGLARLVEHGGEPQTTQVVTGTPGYIDPEFINNRWPRTELDVYSFGIVLLEIACGKRPASRQLPNGASSLLAWVRDLYDQGKILDAADQRLNGEFNQQQMERVIVMGLCCSHQDPIHTGGETIFRRSADFHNSPGCNKNRG |
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| Function | Probable kinase CHARK [UniProtKB/Swiss-Prot:Q2QRN7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0011870 | OsLima_12g0011870.01 | Chr12 | 15639201 | 15642360 | + | NAM | ||
| CDS seq | atggcgctactgctctgggtgttcagctgctcgctcttctccttgtggatcctctcgttcatgaggtcccaggccaccgaggcgcgccacgggacgctcgccgtcatgtgcgacgagcgcgcccggatcctccaggaccaggtgaaggtgagcatgaaccacctccaggcgctcgccatccttgtctccaccttccaccactccaagagcccgtccgccatcgaccagaccacattcgcgcggtacgtggagcgcaccgcgttcgagcgtccgctgacgagcgggctggcgtacgccgctcgggtGacgcactcggagcgggagctgttcgagcggcagcaagcgtggagcatcagagcgatgaacttctcctccaaacggccgcgggcggaggagtacgccccggtcatcttcgcgcaggacgcctacaagcacgtcgtctccatcgacatgctctcgggggcagaagaccgtggaaatctactgcgagcgagagaatcaggcaaggttgttctaactgctcctttccagctgctcaataaacgcatcggagtggtcctgacgtacgcagtgtacaagtctgagcttcccctgaatgcgacggtgcatgatcgtatacagtcttctataggatacttgggtggtgtctttgacatagaaggacatgttgataagttgcttgaaaagcttgcaggcaaagagcccatgacggtgaacatatAcgacactaccggtgagagcatgattcgtatgtatggttcttcgaatgaatcagccagtggcatgtgtcatgtcagcaCGctcgacttcggtgatccattaaggaagcacgagatgcattgcaggttcacgcaagggccaccttggccatggctggcagtagcatcatcgtacggaaccctcgtgatttctttacttgttggatacatctttcattttactgacaaatggattgccaaagtggaagatggttacaaggcgactgacatgcagatgccagcaaaggatgaattcgcggccacagagaggatttcagatatggaaagagatctgaaggaagatgctctgtttttcgacacgaccaaaagccccagtctgttggagatctcgcgtctgctgaaccatcgtgatccagctcagaatgttcaccaggaggagcaagagctcaaccttccAttggaggcgcaagacaaactgaaagagactgagaggaagctggggaggatgtccaagttcattacaaaggttatgaaattaactagcgctagcattcgctgtttaccttctcgatttcactgcttcaacaagaaggtatggagcattagccttctcggatttttactcttcattcttgtcattggagcttttgatcagccatacaatcaacctttgggcacgggaggggagggtgacaataacatgatgctgaagaattttgggttctctcgtggaaggttgttaattgatacgctccatggtacatggactaaacgcggtgtgcagagtagtgacacgatcagggttgatctcagaaagatgacagggaataatgacagttctgggcagcagctcaagcactggtcttcacataagtcaagtgagatcccggctgtcctgtatgttccgatgaatggaaagcaagttatagtccactgcaatctaattgtagatgagaaagcattggtaaattggatatcaaatggtgatactgatcagtcaagcaagtatcagaaagaaactgcagggatacaaaacagaacagacaagcctcacctgccagcaaacaagtcacacaaaacaacagtaagcccgtggattgtcttacttccagttttcatgcttgtactccttggcagtattatatggcgccggtgcaacgaccataggaGgagagttcaacaaaaagagctggaacttttgggaataatggggcctagtcgattccaactacaagatctggtagccgcaacgggcaatttcgcagatgagaacaagctcgggcaaggagggtttggccctgtgtacaaaggctacttgagggaccaggaccttcatgtggccatcaaggtgttgtccagaaggcaatcttgtcaagaacaatcggcgcaagggttgagggagttcaaggcagaggtgaaagtcatgacgcaactgaggcacagaaacattgtcaagcttgtgggctggagcgacagcaagaaacagctccttctcgtttatgaacttatggctcaaggaagccttgacaagcatctctacgaccctgagaaaattttaacttggcaacaaaggtacaagattgtacttgatctgggctctgctttgctctacctccaccatgactgcgagaaatgcattgtgcatggagacatcaagcctgcaaatgtaatgcttgatgtgtcacacaatgctaagcttggtgacttcgggttagcaaggcttgttgagcatgggggagagccacaaacaacacaagttgtcacagggacccctggatacattgacccagaattcatcaacaaccgctggcctcgcaccgaattggatgtgtacagcttcggtattgtcctcttagagatagcttgtggcaagcggccggcatcgaggcagctgccaaatggagcttcatcactgctagcctgggtgcgtgatttgtatgaccagggcaagattcttgacgcagcagatcagaggctgaacggcgagttcaatcagcagcaaatggagcgtgtgatcgtcatgggtctctgctgttcacatcaagacccgatccacactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtcccggttgcaataaaaaccggggctaa
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| Protein seq | MALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAILVSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAMNFSSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLTAPFQLLNKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAGKEPMTVNIYDTTGESMIRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGYKATDMQMPAKDEFAATERISDMERDLKEDALFFDTTKSPSLLEISRLLNHRDPAQNVHQEEQELNLPLEAQDKLKETERKLGRMSKFITKVMKLTSASIRCLPSRFHCFNKKVWSISLLGFLLFILVIGAFDQPYNQPLGTGGEGDNNMMLKNFGFSRGRLLIDTLHGTWTKRGVQSSDTIRVDLRKMTGNNDSSGQQLKHWSSHKSSEIPAVLYVPMNGKQVIVHCNLIVDEKALVNWISNGDTDQSSKYQKETAGIQNRTDKPHLPANKSHKTTVSPWIVLLPVFMLVLLGSIIWRRCNDHRRRVQQKELELLGIMGPSRFQLQDLVAATGNFADENKLGQGGFGPVYKGYLRDQDLHVAIKVLSRRQSCQEQSAQGLREFKAEVKVMTQLRHRNIVKLVGWSDSKKQLLLVYELMAQGSLDKHLYDPEKILTWQQRYKIVLDLGSALLYLHHDCEKCIVHGDIKPANVMLDVSHNAKLGDFGLARLVEHGGEPQTTQVVTGTPGYIDPEFINNRWPRTELDVYSFGIVLLEIACGKRPASRQLPNGASSLLAWVRDLYDQGKILDAADQRLNGEFNQQQMERVIVMGLCCSHQDPIHTGGETIFRRSADFHNSPGCNKNRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.131331 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0454800 | RBH | 0.0 | 0.0 | 0.172912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g26940 | RBH | 0.0 | 0.0 | 0.044357 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0454800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012240 | RBH | 0.0 | 10.811971 | 1.754520 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012380 | RBH | 0.072151 | 2.222968 | 1.164711 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012270 | RBH | 0.0 | 4.002157 | 4.439247 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012060 | RBH | 0.0 | 0.105773 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011750 | RBH | 0.916401 | 6.045685 | 2.553680 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0219600 | RBH | 2.599744 | 21.3147165 | 0.0062705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011960 | RBH | 0.0 | 10.015546 | 0.147539 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0247500 | RBH | 1.2738875 | 7.6253125 | 0.0179375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012070 | RBH | 0.688404 | 8.865475 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012040 | RBH | 0.071333 | 0.0 | 0.227134 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012260 | RBH | 0.0 | 2.354595 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012010 | RBH | 0.045816 | 0.259913 | 1.035916 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011790 | RBH | 0.0 | 7.141815 | 0.610188 |
