Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_12g0010300 OGI:01072120 | 11/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr12:11779175-11785813
Gene Symbol -
DNA seq

atgcggcgcgggtgagggaaggggagtggagaggggagcctcgggtaggcttgggctgggtttgggcttgcgccgccactgtccgttgttatatagcggcgggcggtgctcgagggttttgtgcctcgagattcgtgtagtgcgtgcatctgctgcagctctcagccgttgattattccgtatgtttcctttttttttttgttcctttattagttcgacgagagaagcaggttgacgaaaccctagcgaagtgaccgaggatgaccgattcctctcctttcctcctttccgttttcgtgtcgtctcgtcgcggagttgtgctgtgttctacgggacgtgtcttgcggtctcacctagcgtgcgtaggcacccgcagatgtgggCcccgtcggtcaggcggtcggtgaaggttttgcccgtcgtttagcacgaaatggctcgaggctggagcgtgtgaatgaatggagaaaagtaacatggacctgtcacacatgattctcgtgatcgactgagattagtttctcctatttaactctcactctcttaacaagagttgatttagtgagaaaatattttatttttcactaatgagataagcaaaacaagtgtgtatatccccataagatcagtttatccttattcggcatattgaaatatatactattccaaactatgtttgaaattgatctaataaaaccaagaagaaaatgaatatgttttctaaattttattgtgcttgcatgttattttgggaaaagtgtgtgttttattttagtgttggctggagggtgatcgctattatgaaaggaaCACCTTTAAAAATAGTTTCCCTTTAATTCGACATTAATCAAATTAATTTAGAGCGACTAAGGTGTCTTAATTGATCTCATTCGAAGAAACGTAAGAATGGCTATGAGTTTGCCAAATCCTCCTATAAGTTGTTAAATGGGTTGGGTCTTTTCGTGTCCGCTTGGCACGCAtgtgaaattgatagactaggaacaacgcaatccgtttggccgtagttcgtgttggcatggcttgtctacccacgtcgtgcttgtgttgctatttgacctggcatgccaacatgactagtgcatatagtgagcgagcacgacatgggccatgaatagcatgacacggtctgacctctgcggcatgatgatgaccgacgattggcgaacaagtaccaggggctaggaggaaaggagaacgcaagaatcgagaaagccatgggcttggggcagaggaagcgatggtagacgctcgtcgacgtaggcctacacggtagcgtggtggcacggccaaccctattcatggcatggcaacatatgtggaatcgtgtcttgtgggtatagttgtataactttgatcagagtaaaactattcgtatagccgtgcccgcagttatgggcgatcaaccagattcatcgtgcttagtcttatttattaataatttgacttaatggaactggcatagtttaggtggagagttgggcctgttgtaacgtggtgtagcgttgaacaatgatgattaatattgcttaatttacattaacaatttttactgctttcaactactgcttttaaatacttgctttatgcaaatgaacccttggcctccttttgaattacttgcatcatacctcctcttctggtatgacttgctgagtacagtaggtagtactcagtcttactctttcttccccacactagagatggagtacttcttggttggaggtttctcggagaagtaggctacatcactgccgtcaaggatgcctgtggagtggagacgccacgctgcaagagtcaagtctttagtttaagctcgcttttacctttccgctgcatttataaaacttttattatatttgtaagatgtagatctgtatgtcaactttgtcatttgtgtacactggccggtcctggacaggggttttgatgcacattcagcttggaaattctggctcgtgaatttctgggcgtgacacaggtgggcccctatgatggttcctggtggtttggccccgcttcacatcggtttggcctgacttgtgggcccctcaatccatgtgctcgcacgtgatttgctggaagtgtgtttctttacacgccgaccttatctccttcacttttgtgtttattcctacatccaatttaattctccaattgtaatacaactacattatttattattggtatgcatgtaagaaatgataattttccctttattaattttgctagctagtggtcaaaactggtacttaacatccatcaacagtaggaagtgaagggccacgaaggttgttggcggttattaaatgccaattttatgccgccaatacctacataaattacagataatacaacatccaacatagtgataggattcaattctaatatattccacgagtattagtgtatatttggatacaggcaataaaccactgaagttgggaggaattttatactaaagtgaagaagaattctatccatacaagagttgggctcctaaactccatcaaaacaccagtaaatggacccaactaccggagaaatggataaggcagagtgaggaggaggcccagaccgaatctgggggccatctggcctagccctggttgcgaaccctggtgatcaccgttggatctaggttttggtatggatgctccagatgctctcttgatggcggttgcggggcatttccgacaatttgcatagttacaccgtcatatctgcctatttaaggacttcactccttcacttctcacacacactccaagcttgagctgaattataagaggctctattatacTAtattgtatactagaattaggaagagtaatgtagaagaactcggaggaattccagagttgtcagtaatcctcttttatttcttgtactttattaattactctactttaatagaaatatcattctgagtaattaatatttacttcgtgagaattattctttgattagatcctaatcagcgtgcagatcattgttcactatagtccattaatctatagcgattgctttagtgtttagttagcgctaaaatagttattaattgcgtagacgcggtgtctgggtaattaatttcttgtgattgcttcgtatcccacgttaggtttgaggtgggtgtagaggtgtgacagccctcaaataaactaaagtcctccttgtcgggtacgcaatggagcgacatctgggagcagcggtatagcatcccgggttttagctatagtcttagtcacgctaatgatttggtcacactagctgagagcggtgtcgattgagccacgatgctggctaggacctataaatatgttgattgttgttctattatggatcttaaatgatttttcaatcgtttccttgtcatttatttatcaagtcatatccatatgcatcattatttttagttagagtaaacctggtgaggagtgggataatttagttttggttaaattatagcatagattagtcgtcacgaagtgaggtacacatgtgcacagtagaaaccacatctctttatttacaatttaccactataggtctgcatacatacatgcatataattgtactctagaaatcttatacagtatgcatcacatatattgtgcatttacaaggtgcttatagataccatatcataaactgaaacatctcagtcaaagattcaataattatttatttttcagaaaaactcttcagtcatagagcaattacaaatcagtcctcgagctctagtaaaatcttaaatattataaaaccttaaggactagaatgtaagaattccataagtacacgtgttaaaccaacttcctgctgtaattataacgccgctcttaatctaccctataattcaccaactcatttttacacctacatactcattcatcAaatcctacggacgagaatcaactaccgcttcagatccaacgaaccatacctccctcacggcctcacctcccaccgcgcacccgctcccatccacgaaaccgaatcgcgctatcatcgccgctctctcgctctccccgcgtcgcgccatcatcgccgcctcgccggtctcctctgcgccgccgccctcgcctctccactgcgccgtctccgcgcctccgcgccgCCTctccacccgcgcctccccaccgcgccgtctccgcgcctccgcgccgcctctccacccgcgccgccgccgtccctcgcctcctcaccacgccgccgcccctcgcctccccacacaccgcgccagcgcccctcgcctctccacccgcgccgccgccgtccccattgcgcgccgtcgtccctcgcttccccaccgtgccgccgcccctcgccccaccacgccgccgcccctcgcctctccaccgcgccgtctccgcgcctccgtgccgctacatcaccgtcgcccggagttgccagggtcgtcgtcctccgatctccttcacccgcgccgatctctcccgtccgcgccgccaggccacgccaccgatctcctccgtgccaccgctggaacacccacgcccgcgctgccgacgacgaacaagtaagtagtagttgctagctctggttggcagcacatacacatttcatcgagcacgtcttgagtgttctagatttcttgagtgctctatattgtggtcagatcaacaaggtatccatctggcatgtagttctctcatttgttgaccatccaagtgattgaaccaatcttctgttttgcaatttgtggtgttaaaaaatattattcagtttacatatgagaggcctcctgtgattcacctgtaccatcttctaggcataataatcggtatagctgttttttacactacaacctctgtacaggctaggtattccgagcgccacagtcagtcctacaagatcagcgtcggcagtcctctctgccctggtacaaggcaaactctttcctcttatatttgcaaatgcactggtatattatatactctatacatttaagttaaactcatctttttctgccatcagaagagaagctgccttgtcccaattccttgcatttgatcccaccaattttgtgatagattgtggatttccatcacacatgtttcatcgttatttttttttcctgacgacatgtttttctattaaaagaataataattgtacgaacttttcatgaaaaatttaccaacataattttctcatggaaaattctagcatttctgtattaactaatcatggaaattatcgatgtctgactgggacggcatctatttgacattggaggtagtactgattacaaaaatgcatacaactaaattgaataaggtgccagacagttgcaagccccttctgttcttgaggctgtttggaatcaactttcatataagttatatctgttgtgatctcttctccgtacaattaattccttttcaaaagttcccccttgctgcagggaggccaaagcTttttttcgttattgatataatatagttaagtcttttgcatgtccctgaaaaaaaggttaaaaagatacagatgaagcatatgcaaagaaccttagtagaactatatgtatttacatgtgtgcaccttggtatattgagagaagtagagcctgcagcatccataaaataccttgctttttttaaattttattttatttgtacttgcatatattgtttttagttgtgataacagagatatataattttcacttaagacgatattgtagtgtggttttattatgctttctatttggatattcgataggggggacgttttcggttcagatatcgaatttgcgaatttggccatagctagctgtcatatatgaaaattagtacacctattgacaggacaaagctagctacatgcatgtgtgcattttgcttggaatcatgtaagatcaccatccaattcgcaacattgagccattttctttctttgtgtttcgctgaatgtgtggtgtcaaatttccatgcctaggaggtgctcgattaaatgcggcataaacaatcttccattcaattcatcaaacaattttgtcctcaatgtgtggttttgtactctttatctgtgtactaggtagtaattttcagattgtagttgcagatcaggtatattgtcagttgaaattagattctgaggggtatagatgctttctgtgcatgaatgaacttaaaggctactaatctgcatgctgtctatctttttctttttgcttggtacagaatgcttagttgtctgggacaacaagctcaatttccacctcgctgatatcattttcacctacaccgcccctgttgtcatccacgaccacactgcatctcccttttgtccatccaggaagatcgccctcacagcgatcaacctggggaaaggtaaatttcccattgaaacaggtccacccttttgttaatatttaaaacattcctttatattcctccatgtataaaatcctctgaagggaagcgttttctctgtgatttttgagggaaggaatgtttcctactcgacattttcagaaagaaaatgtatttgtagtaccattccttggttttttcgatttgcatgatttcttgtatagctgctcatcgtcttgaaacctacagttaacccattggatgctgttgtagtaaactactga

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CDS seq

atgcggcgcggatccaacgaaccatacctccctcacggcctcacctcccaccgcgcacccgctcccatccacgaaaccgaatcgcgctatcatcgccgctctctcgctctccccgcgtcgcgccatcatcgccgcctcgccggtctcctctgcgccgccgccctcgcctctccactgcgccgtctccgcgcctccgcgccgCCTctccacccgcgcctccccaccgcgccgtctccgcgcctccgcgccgcctctccacccgcgccgccgccgtccctcgcctcctcaccacgccgccgcccctcgcctccccacacaccgcgccagcgcccctcgcctctccacccgcgccgccgccgtccccattgcgcgccgtcgtccctcgcttccccaccgtgccgccgcccctcgccccaccacgccgccgcccctcgcctctccaccgcgccgtctccgcgcctccgtgccgctacatcaccgtcgcccggagttgccagggtcgtcgtcctccgatctccttcacccgcgccgatctctcccgtccgcgccgccaggccacgccaccgatctcctccgtgccaccgctggaacacccacgcccgcgctgccgacgacgaacaatttacatatgagaggcctcctgtgattcacctgtaccatcttctaggcataataatcgaatgcttagttgtctgggacaacaagctcaatttccacctcgctgatatcattttcacctacaccgcccctgttgtcatccacgaccacactgcatctcccttttgtccatccaggaagatcgccctcacagcgatcaacctggggaaagttaacccattggatgctgttgtagtaaactactga

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Protein seq

MRRGSNEPYLPHGLTSHRAPAPIHETESRYHRRSLALPASRHHRRLAGLLCAAALASPLRRLRASAPPLHPRLPTAPSPRLRAASPPAPPPSLASSPRRRPSPPHTPRQRPSPLHPRRRRPHCAPSSLASPPCRRPSPHHAAAPRLSTAPSPRLRAATSPSPGVARVVVLRSPSPAPISPVRAARPRHRSPPCHRWNTHARAADDEQFTYERPPVIHLYHLLGIIIECLVVWDNKLNFHLADIIFTYTAPVVIHDHTASPFCPSRKIALTAINLGKVNPLDAVVVNY

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_12g0010300 OsLima_12g0010300.01 Chr12 11779175 11785813 + NAM
CDS seq

atgcggcgcggatccaacgaaccatacctccctcacggcctcacctcccaccgcgcacccgctcccatccacgaaaccgaatcgcgctatcatcgccgctctctcgctctccccgcgtcgcgccatcatcgccgcctcgccggtctcctctgcgccgccgccctcgcctctccactgcgccgtctccgcgcctccgcgccgCCTctccacccgcgcctccccaccgcgccgtctccgcgcctccgcgccgcctctccacccgcgccgccgccgtccctcgcctcctcaccacgccgccgcccctcgcctccccacacaccgcgccagcgcccctcgcctctccacccgcgccgccgccgtccccattgcgcgccgtcgtccctcgcttccccaccgtgccgccgcccctcgccccaccacgccgccgcccctcgcctctccaccgcgccgtctccgcgcctccgtgccgctacatcaccgtcgcccggagttgccagggtcgtcgtcctccgatctccttcacccgcgccgatctctcccgtccgcgccgccaggccacgccaccgatctcctccgtgccaccgctggaacacccacgcccgcgctgccgacgacgaacaatttacatatgagaggcctcctgtgattcacctgtaccatcttctaggcataataatcgaatgcttagttgtctgggacaacaagctcaatttccacctcgctgatatcattttcacctacaccgcccctgttgtcatccacgaccacactgcatctcccttttgtccatccaggaagatcgccctcacagcgatcaacctggggaaagttaacccattggatgctgttgtagtaaactactga

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Protein seq

MRRGSNEPYLPHGLTSHRAPAPIHETESRYHRRSLALPASRHHRRLAGLLCAAALASPLRRLRASAPPLHPRLPTAPSPRLRAASPPAPPPSLASSPRRRPSPPHTPRQRPSPLHPRRRRPHCAPSSLASPPCRRPSPHHAAAPRLSTAPSPRLRAATSPSPGVARVVVLRSPSPAPISPVRAARPRHRSPPCHRWNTHARAADDEQFTYERPPVIHLYHLLGIIIECLVVWDNKLNFHLADIIFTYTAPVVIHDHTASPFCPSRKIALTAINLGKVNPLDAVVVNY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0010950 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0011160 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0010540 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0016620 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G016740 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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