Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0010080 | OGI:12032650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:11579097-11585093 | ||||||||
| Gene Symbol | C3H66, OsC3H66 | ||||||||||
| DNA seq | gcagaagcaatgtggcAaatgactttaggaggaggagagtctatggagtccactccataccctgagcggataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacctgcaaattcaatcaCcccccaaatagaaaactggtaatgttacttgtgcatcatgtattatttgtttgggtaaagtctttttgatccttgaactttgctcaaagttttttttttcacccctgaaatacaataccggttttttttcacccctagcttcgaaaaccggccatattaggtcccggaaatttggctgatatttgtaatgtgtatatatcttgaatagacctaatttgtcttttcctttttatctttctttctaaattctcagctgctgaattttttgggttaagaatcaaccactccatatgttacagaaattgtaaagagaccactcaatgtttatggtcattgattgcatcattgttcataatgatgttaatctgaaaattgcaagataatgttgcttggaaagattgtgaaatttgaagtggccccaaaactaaattgggcaaacatacaaagaatttggattctttagtcactcatttaactatatcaaattcctggtggagagttgtttgtactttgtacactcatttaggtagcttctaaatatctaatttgatgcatttaagctgccatacgttctgctgtatactattgtatattatatagcgcactctagctagagctgttcccacttttccttatgtaaataataggtggtgtattgtcaatttttttcataactattatttgcatagaaatataaaattagaatgcaatttaagtgcccaggggttcccatcccaggtctcaatatgcagaaagtgtataacaccattatcctacatccatgatttttttggttattattgacacagtatgttgcgcacttttcacAaacatggatgcgacagcacctgggcaaacgatatgccaaatatggtccacttttttgtttgaatgttagaaatcgtatgattttgtttccttatcccttttttgcttgattctaatttttatctttacccaattttttttattgaattatcaggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtgtcaagtgggtactaaatcttttattaacttaataaatcaatttgtcttattttttttcttctttgccatgtggtgtgtgattaacttttaacagtttgctgggtttcaatactctggctgataattaatatgtttgatctaagtttaatttaaacttaagctcatctgtttacaatgttggtaatctatcagtaaaaaaattttgaacatgagccatttgagtacagttcctagcaacatattttgtggcagccggttggcaaaaatatttgcttgcattcTttgtaagttaacaagaattagctttaaagagaaataactttgtgaacaatatcagtcagtaccatgttacattgcaagagcactctctgtttctctgactatacatgtattcagaagaatcaaccttaacattttgctattatgatgtaatattttctgttgTtttagtaaataatatagctgttaacacatttttctatgagtatttttttctactagcctttcattcttatcagctataaatgaacttcgtttttaaaatttgccatatccttcatctttttatagaacctcgactgctatttatgcctcatcttttgatattctactattttgtactgaaactggcttttacatgtcatgaacgttatgcttagagttctcatattttctgttctttcagtactacttgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaaggctgcacttgcaaaccgtgtacagttaaatgttctaggctacccgatgcgtccggtttgttccataattctataatttagttgtcacctgattgcttaatcgtaatatctgttctctacctcttagcttgcatgcaagattagctttcattaacttgcagtttattactgcagaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatgtaagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattcacctggacagtctgcaacctctcctggtcaacatacttatcctggggccgtaacaaactggaccttgtcaagatctgcatcatttattgcaagccccaggtggcctggccattcaggctatgcacaagtaatcgttccccagggccttgttcaagttccagggtggaatccttatgctgtatgttccttaccctttcttcatacttcaatttgtgcagttattcgctatcctattatgtattatatgctcttcctcggcatgctatgctgatacttgttctgaatgcatggaaatgcggtcttttacttttactatgtttatgttcatcattcataatgtacccacttcatgcagtatactatccttatttatagttgccccgtttttttatttggaacaatcaacttttatgtttattcaagtcgggggactaatttttaggtttgtttatgtatgttgtccaTttatttcctgctaataaaccctccaatatgttttttcacttactaaaacatgtgccgaactatttgaaatcatgaacttatcactcagtggtctccatcaaacttgtgttaaacatgggtgcaactctggatagatccatttagcgtctataacctccatcactcctagacaatatggattgccacattttgcatggtatattaagtaattaaatatggaaatgttcatggcctgaggcataaaatttagctgtctgagaaatctgcatttcttggcatattggatatggcaccctttttgttgcagtgatattataccacttcttggtataacatatgttttaacaagaataacctggatttgggatcttcaatccttgaaattagttgcaatgatatcaagatgtgaagtttctAaaaaaaaaaaaagtgatgtcagatctcaagtgtgtaacctgatttctcatagtatttttgtcatgataaagtaaactgattactccctctgtcccaaaatataAGaacctaggaccggatgggacgtttcctagtacaactgtccagattcgtagtactaggaaacatcccatctggttataggttcttatattttgggacggagggagtagaatttagccccagttcctcaccttcacaactgtgtgcattcacatctcctttgttggataaacatttgctgcttttccagttgtacttgatacaaactattttatttgtactggtgtaggatttgttcaatctttcctttcagttcagttttacaggaatggagatatatcagtatggggttacatgcattacagtttgatattgttctgactaaggtttaggttttgttttttaccagattgttcgtcaaattattttccttcaaagttaaatgactgcaagattggagaacattattttcgattacatttatatatgaaagagtcgttcacaaatcaatgcgagtgcacttactctttttggttgcctgcattttaactgtatatgactttttatttataatctcttaggcacaaatgggctcttcgtctccagatgaccagcaacgaacacctgtaaccactcaatactatggctcacgtcagagtgaaacaggtggtatgggagatcatggaatgtatcagtcataccaaggaggctctgttccagtcggtgtttacacagtacaaggggaaaatatatttcctgagagacctgatcaaccagagtgtcaattctacatgaaaactggagactgtaagtttggtgctgtttgcaagtttcatcaccccaaggagcgactggtacctgctccaaactgtgcattgaattcacttggtcttccactacgcccggtaaggTtttttttttatgttgaaatttctcaagcaaaattttgtgaggaccattccatttatagtggccatcatgcaattttttctgcatgtgttgtcttgtttcctgttcttttaaggtactgaccgtgtaggtgaaaagcatttctgggaaagctatcgtgggaggaactattatgtgaaacggttataacctgaaaattggttgtattcatacggtgtaaagtgagttaaaagtgctaatactgaagtaaaaacaaaacacaggttttcctttcttatgatcaccacagtagcagcactgagcaacatgtctgtgcatgagattttctaatttatttactggtgttagtggtgaactggtgacataggacatgggcagagctacattagattaggcgggtgctcaggaacctggtcaagcaattgttttagctataatctgtctattttcaccatatgtgcaCcccctcggttcaaattcaggcacccgcatcagcctaaactcggtccaaagtagagcaaaacaagcgagtggcatccctgccatttagttctagctccgcccagtaggtgggacAaaaacctaggcagaagtatcttgcatagtaagcaagcccccccataagcctttctttagtactagtatgtattcaatttctctgtaatattcaggatcaaaccagttatttctctaacttcaatttagtggagtttaactactacagctttttgttgattgattgagagctggagttatttgagttgaaaattggatatctataccgagtaacttcattgtgtaaggtatttggtgcatatttcccttcctagtgtggtagtacagattatgaaaagtttcttttagtactaggttgacaagctcacttgcaaattccattactttctgctttatcaagttttggtacgaggaactggatttctgattattgttttttgtggttcatgcctgttagtagttccaataaattataatactagagtaatctgtaatttggtactttttgcctatcgggggatgctaccctaacatctatctctttcctgctaacagggagaacctgtctgcacattctattctcgttacgggatctgcaagtttggtcctaattgcaaatttgaccatcctatgggaacccttatgtatggaagtgcaacatcaccaagaggtgatgtgtcatctatgcattatcagttgtcaccctcaccagggcatccaggaatattgcttgatggaggctctggaaggtctcaccgggttcctcagtctgattcccagcaaataccctctggcgatgggaatgccgagagagaggcatcataagccctcctcggcctttcctcatgctacctCccattcttgactcttcagtaattatctccaacaaattcaaagagctgaagctgtacaggtccttgtccatcctttttctgcttctctgaatcaccacacaccggtgcttcatcatgtatcacattcaggcaggaaaatgttcttgcttgcccctccccgccccaattcctgcatgccccgtgAaaataaatggggcaaccattcttatttatccctaccatatatacacacacaagatacactcacctcctgacactcggttcggcgaatgatgtgccttgatccctctgttgtagttatacaggtggcctgcagtggacaaagcttaccaaactgactgtattggggattctgtttcgttttgctcttcttcctttctaggcattggggagtaagcgcaggacttgctgcttgtgcaagtgtgcatgttgaaaacaacggaaataatgctctgccttaattgtaataattgtaatttatgttctaccaactgaattatttgttcaataaaagaatcggccatggctgcgcgatctgggtcattgttctcgacattgaattctcc
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| CDS seq | atgtggcAaatgactttaggaggaggagagtctatggagtccactccataccctgagcggataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacctgcaaattcaatcaCcccccaaattatcaggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtgtcaatactacttgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaaggctgcacttgcaaaccgtgtacagttaaatgttctaggctacccgatgcgtccgaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatgtaagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattcacctggacagtctgcaacctctcctggtcaacatacttatcctggggccgtaacaaactggaccttgtcaagatctgcatcatttattgcaagccccaggtggcctggccattcaggctatgcacaagtaatcgttccccagggccttgttcaagttccagggtggaatccttatgctgcacaaatgggctcttcgtctccagatgaccagcaacgaacacctgtaaccactcaatactatggctcacgtcagagtgaaacaggtggtatgggagatcatggaatgtatcagtcataccaaggaggctctgttccagtcggtgtttacacagtacaaggggaaaatatatttcctgagagacctgatcaaccagagtgtcaattctacatgaaaactggagactgtaagtttggtgctgtttgcaagtttcatcaccccaaggagcgactggtacctgctccaaactgtgcattgaattcacttggtcttccactacgcccgggagaacctgtctgcacattctattctcgttacgggatctgcaagtttggtcctaattgcaaatttgaccatcctatgggaacccttatgtatggaagtgcaacatcaccaagaggtgatgtgtcatctatgcattatcagttgtcaccctcaccagggcatccaggaatattgcttgatggaggctctggaaggtctcaccgggttcctcagtctgattcccagcaaataccctctggcgatgggaatgccgagagagaggcatcataa
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| Protein seq | MWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNYQAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWTLSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSMHYQLSPSPGHPGILLDGGSGRSHRVPQSDSQQIPSGDGNAEREAS |
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| Function | Zinc finger CCCH domain-containing protein 66 [UniProtKB/Swiss-Prot:Q2QT65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0010080 | OsLima_12g0010080.01 | Chr12 | 11579097 | 11585093 | + | NAM | ||
| CDS seq | atgtggcAaatgactttaggaggaggagagtctatggagtccactccataccctgagcggataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacctgcaaattcaatcaCcccccaaattatcaggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtgtcaatactacttgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaaggctgcacttgcaaaccgtgtacagttaaatgttctaggctacccgatgcgtccgaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatgtaagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattcacctggacagtctgcaacctctcctggtcaacatacttatcctggggccgtaacaaactggaccttgtcaagatctgcatcatttattgcaagccccaggtggcctggccattcaggctatgcacaagtaatcgttccccagggccttgttcaagttccagggtggaatccttatgctgcacaaatgggctcttcgtctccagatgaccagcaacgaacacctgtaaccactcaatactatggctcacgtcagagtgaaacaggtggtatgggagatcatggaatgtatcagtcataccaaggaggctctgttccagtcggtgtttacacagtacaaggggaaaatatatttcctgagagacctgatcaaccagagtgtcaattctacatgaaaactggagactgtaagtttggtgctgtttgcaagtttcatcaccccaaggagcgactggtacctgctccaaactgtgcattgaattcacttggtcttccactacgcccgggagaacctgtctgcacattctattctcgttacgggatctgcaagtttggtcctaattgcaaatttgaccatcctatgggaacccttatgtatggaagtgcaacatcaccaagaggtgatgtgtcatctatgcattatcagttgtcaccctcaccagggcatccaggaatattgcttgatggaggctctggaaggtctcaccgggttcctcagtctgattcccagcaaataccctctggcgatgggaatgccgagagagaggcatcataa
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| Protein seq | MWQMTLGGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNYQAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWTLSRSASFIASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSMHYQLSPSPGHPGILLDGGSGRSHRVPQSDSQQIPSGDGNAEREAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0010080 | OsLima_12g0010080.02 | Chr12 | 11579187 | 11585079 | + | IsoSeq | ||
| CDS seq | atgtatcacattcaggcaggaaaatgttcttgcttgcccctccccgccccaattcctgcatgccccgtgAaaataaatggggcaaccattcttatttatccctaccatatatacacacacaagatacactcacctcctgacactcggttcggc |
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| Protein seq | MYHIQAGKCSCLPLPAPIPACPVKINGATILIYPYHIYTHKIHSPPDTRFG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 11583153 | 11584229 | + | OsLima_12g0010080.02 | OsLima_12g0010080.02,OsLima_12g0010080.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.613016 | 0.559374 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0405100 | RBH | 5.064543 | 3.432081 | 10.404334 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g21700 | RBH | 3.396114 | 2.288954 | 2.659087 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0405100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010320 | RBH | 1.185570 | 26.766224 | 9.898433 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010540 | RBH | 0.885900 | 3.172693 | 5.209412 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010480 | RBH | 2.116521 | 15.545979 | 18.092567 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010270 | RBH | 0.386661 | 0.339286 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0010070 | RBH | 14.345338 | 25.049112 | 37.078873 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0166200 | RBH | 8.4634685 | 12.1949765 | 17.0080855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010160 | RBH | 0.645154 | 1.324407 | 3.477070 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0184500 | RBH | 8.9332695 | 10.0544065 | 12.2944625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013710 | RBH | 0.536830 | 0.394510 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010390 | RBH | 1.184824 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010290 | RBH | 7.323617 | 25.051941 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010220 | RBH | 2.739480 | 0.0 | 2.654362 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010380 | RBH | 1.213874 | 0.668310 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010130 | RBH | 0.997551 | 4.895649 | 5.316875 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009990 | RBH | 1.529601 | 24.601183 | 13.502533 |
