Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0009410 | OGI:12029000 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:9967030-9967553 | ||||||||
| Gene Symbol | PTR, Ptr, OsPtr, Ptr(t), Pita2 | ||||||||||
| DNA seq | aggatcgagcaggctgactggctgaggcaaacgtgtcgcggcgcaggccaggttttggcaaaacaggtgacatctttagattctgtgactagagattactttgtcatcttccctataatggtgtggtgtgtttttaattgcctgttccctggaacttgggatctagatgtccttgcttgtaatttctagggtttggtttaattccagccgatggtagcttcggctaaggactaaaacggtcgggaaaaatgcaaagatagcttcctaccatttcctttttcctcgtaaacggaattagaacggtagagcctgttcgtacaagtaaattttgtgtagttttgtgtacaagtaaatatttaccgtctctgcaggtgaacagaatgtccggtggacagagccgtgctcatcgccttgggcacatcgatgggaactggccagaggtgaagctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccaggacgggcttcctggtgctcacttga
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| CDS seq | aggatcgagcaggctgactggctgaggcaaacgtgtcgcggcgcaggccaggttttggcaaaacaggtgacatctttagattctgtgactagagattactttgtcatcttccctataatgagccgtgctcatcgccttgggcacatcgatgggaactggccagaggtgaagctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccaggacgggcttcctggtgctcacttga |
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| Protein seq | RIEQADWLRQTCRGAGQVLAKQVTSLDSVTRDYFVIFPIMSRAHRLGHIDGNWPEVKLINDYAMFMGYLSMAVTRTGFLVLT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0009410 | OsLima_12g0009410.01 | Chr12 | 9967030 | 9967553 | + | NAM | ||
| CDS seq | aggatcgagcaggctgactggctgaggcaaacgtgtcgcggcgcaggccaggttttggcaaaacaggtgacatctttagattctgtgactagagattactttgtcatcttccctataatgagccgtgctcatcgccttgggcacatcgatgggaactggccagaggtgaagctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccaggacgggcttcctggtgctcacttga
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| Protein seq | RIEQADWLRQTCRGAGQVLAKQVTSLDSVTRDYFVIFPIMSRAHRLGHIDGNWPEVKLINDYAMFMGYLSMAVTRTGFLVLT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0285100 | SBH | 30.280594 | 30.580265 | 27.862715 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18660 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0285100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009680 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009810 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009600 | SBH | 0.278721 | 0.081459 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009500 | SBH | 79.345589 | 68.573959 | 55.447197 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0149800 | SBH | 0.345338 | 0.6124855 | 0.3481355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0164800 | SBH | 0.3565785 | 0.369779 | 0.46656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009450 | RBH | 3.605049 | 1.517734 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009620 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009590 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009700 | SBH | 0.520960 | 2.636267 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009480 | SBH | 0.448261 | 0.816059 | 2.524651 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009360 | SBH | 0.0 | 0.0 | 0.0 |
