Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0009050 | OGI:12027590 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:9488993-9493452 | ||||||||
| Gene Symbol | OsPUB23 | ||||||||||
| DNA seq | gtcaagctattcctttcaacagatatatcatacaaaatcaaattgcaacaatataccagcaattaaatattgcagcttaatcaacaaagaactgactcaactgagtggatgaaaactgctaaaacttcttttatgcaacacttcttttccctttcctttgaccccccatgttggggtttatgtataaatattgtatgaacagaggaaaaatagcatgctatggatccggccatctgaataatacagacacaagattacaagggaaagatatacaccacactatacaacacatgcaataccttcaattttcattcagtcaatctgactattcgaaaaccatttggagagccgcagtctgcaagaccaacattgttaagctggggacacaatcctgacattcggcatgcacaaagattcaagctctgtgttcctctgcaactcaagaggatctgcaatcgacgtgtgaagtagagctagcctattcttttctaagattgtcatgctgcccccatcttggaaaatattccagagaaattgggcagcttgtcaacatgctttagtgctcgctctgctatttgtcttgtcctggagtcaccatgcctgaatgcttcaactaatgctgttccaacattttggtttccagatatctcataagctatttcgtctatcctcaggatcctctccaccgcccacactgctcgctgccgaagtgcctcattacgattctcgcataatacctctagaattggattgaccccctctgcatcacacaagaccatgacaccttgttcaatgtctactccatcctccaacaaggtggacagtgctgctagagcagcttcaaccactttctcattgttgtggtccaagcaagcgaccaacttttctactgccttcccttccaagagacaaaagctctcccttgcagaacatatcccaacatggactctgcaagcgccagttgccacggacttctgactgaggcatggaaatattgaaaaacaaaatcctgggttgggagccggcactatcctagttagaagctttgactggcgagagagattctctagtgcagtagcagagacaatctggacagtgtcgagaccattcatctgaagtaggtcagtaaagaggggagtgagattgtagtcacgagcaacatcaatgatatctagatcatccaagataaatgtgatccgggaaactaccctaactagaccttcaagaaatggattgacaaaacggccaccacgaatatccccttgccgaaccattgtcacttttgttatgattgtggaaaaggccccatcttgtagaagacgtctggtgagtactgagtcccgcggaggaagatcagctatgaggccagcagctgctgcttgttcttcagaaattccgttgctgtcagcaattaccctgaccaagctgctgagttgactaaaatttccacgaaaagcttcagctagttcttgacccataaaaggtgatatattattcaaaagtttgatggaagccaagcgaacttctctttgaggtgcttctacaaactgaatcaaactgacagtagcaccagagcttttgatggcatcaactatgctttggacagttgtagcagaagtggttagaccaacaaggacttgaagtaatttgcactcaattgcaggtccagtattgctgatgagatgaagcaggttgtgaacaatttcttctgacaccaagttctggcggttgtgatcaagtggaacggactcaaaacttgcacctgatgccacaatatttgcaagaattgtcgccgatacttccttcaacctcattggaagctggttactgccaacagtgaagagatctgtgatgagaggtggaagaatgcctgcttcaataagtatctttgcgctggtatcataagatgaaatttgattcaatgccttaagagctgcttctctggcttccctgttcccacttttcatgatattcaccagtgtagagcctgctgtttgtgccacaagtaccttcacatcattgcttaaaacaagctctccaagatgtgcagccatggataattgtgtatcagatgaacctggaaatggcacagaatatgcaacaaaatgtttaatgcaagagtgcaaaggggcaacattacatgtaacaagtacttcatccgtttCAcaatgtaagactttctagcattgcccacattcatatagatgctaatgAatctagacattattatatatatagattcattagcatctatatgaatgtggacaatgctagaaagtcttacattgtgaaacggaggaagtagataacatctttaacatccagtgcttcatttagaaacaatatatagcacattttctaacttgcatatacattagtaaaaaaggtccaatatcacttataacattcccagaccaaccaacacaaaattagactaatgtaaaattcactggcagagggataaaagcagcttcattacaattattgtccacgctagcaaagtgttcgagcattacaacaggtgacaaatagatatactatacgatctagagccagaatggaaaaaagaacatatatatctccaactgtaaataaaaattatatacatgattatataagatcaacaaaagaaatacaaatacatacacatatgcaaataacgcattttttacatcacatgaacgctctacgtaaggagtaaagataaagataaaggcactggaatgcagcataataacaatgcaatgcacggggaagagaataatggcagctgattcgtatcttattcatgaagtagctcaatgcttcattagtcccttttttaaaaacaaacagtactagttcggatttagacatttttttgaaaaattatttaacgggttgttagttggataattacattcacaatgtctaaacatccataatctctgcagcctagataagaatttccaagaaaaccaaaatattcactctgtttaaaaatataatgtgtattaggtttctacatggtttccaacattatactttgattattaatttctttcaatacattatcaataactacaaaatcaaaatcatatgaaaatattttcaaatacgaatctagttaagtattttcaacatgcatgggcactaaacacatacatttttcatttaattatgaggagaagtgatgtggtgtaacagtgggagggtggtcattttctttcatgactcctctagttgcttcttttcagtttccaccatgattttaaccatccgtttgatccgacgtctatgatcatttctctctattttgtcgttttctaaatccgatggtcaatattcattcaatgacgtggcacattctaagggcattttgaaaaagaactttcacttagagagattaatcagaaattttaaatgttgactttgtggaaaactgaactgacaataaagtgataagatatttgctacaaaatattactatctgttcattttggaatgtatactatattattgaatcactttaattgagaagggaaatatctaaatcataccttcaaggagaagcctaagaagtggttgcagcctaccgttttcagccatctgtctaacattcttttcgcagctctctaaattttccaatgtcttctcagctctatcaactgtcaataggttttctactttactactcgacaagccgacaagaataagaatagcaccagaaacactgccaatcttttccgaaagaggtttatattctgaaagttcatataacaaagatacagcctgttctttctcctgtgagtgcccatgatttaagaacttcacaatagtgcgaatattgtccccagcagcaatttcattctgcaaagaatgttcgaacatattagcaatggaaaacttctaaaaagccaagaactggaagtatattaatgcagaatcaccttgttgtcattgtcattttttgctacaaagcgaaggcttcccaatgccttttgacgtacttttggactgctattcttcaacaagtcagtaatcaagctaatcaacccaactttcctcactaaatgtctactggatctacttctctggcatatctccgcaacatactcaagagcttgcaaaatatcaccttctgaacaatcagaggttaatgacttacgggcaacgtcaagtttcgctgcctcatttctatgcatccattcatcaatggtattccgcagagcaatacttggatttaactcagtactgctgagttccttattagtaacagggcagacaagtctcctcccaccgctaccattgtccttgaaccacttcagaatagcttcacgttcaaatgtggcaccactctctatagtgacaggatcccgcataacttgtttagagagaggacacaagaatgattcataaataggctcaacacgcaagctgtcagtggatgagtcaaaataaccatcctgaccttctgccat
More
|
||||||||||
| CDS seq | atggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgagcctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcactatagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagaatgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcactcacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctctttcggaaaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagtaaagtagaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagctgcgaaaagaatgttagacagatggctgaaaacggtaggctgcaaccacttcttaggcttctccttgaagagcttgttttaagcaatgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaaaagtgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatcttatgataccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatctcttcactgttggcagtaaccagcttccaatgagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgtagaagcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcaccttttatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagcttggtcagggtaattgctgacagcaacggaatttctgaagaacaagcagcagctgctggcctcatagctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggccttttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccgttttgtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatcttggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctctttactgacctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactagagaatctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggattttgtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagagtccatgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtagaaaagttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcagcactgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtgatgcagagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttcggcagcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgagatatctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactccaggacaagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctggaatattttccaagatgggggcagcatga
More
|
||||||||||
| Protein seq | MAEGQDGYFDSSTDSLRVEPIYESFLCPLSKQVMRDPVTIESGATFEREAILKWFKDNGSGGRRLVCPVTNKELSSTELNPSIALRNTIDEWMHRNEAAKLDVARKSLTSDCSEGDILQALEYVAEICQRSRSSRHLVRKVGLISLITDLLKNSSPKVRQKALGSLRFVAKNDNDNKNEIAAGDNIRTIVKFLNHGHSQEKEQAVSLLYELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEELVLSNDVKVLVAQTAGSTLVNIMKSGNREAREAALKALNQISSYDTSAKILIEAGILPPLITDLFTVGSNQLPMSIVDAIKSSGATVSLIQFVEAPQREVRLASIKLLNNISPFMGQELAEAFRGNFSQLSSLVRVIADSNGISEEQAAAAGLIADLPPRDSVLTRRLLQDGAFSTIITKVTMVRQGDIRGGRFVNPFLEGLVRVVSRITFILDDLDIIDVARDYNLTPLFTDLLQMNGLDTVQIVSATALENLSRQSKLLTRIVPAPNPGFCFSIFPCLSQKSVATGACRVHVGICSARESFCLLEGKAVEKLVACLDHNNEKVVEAALAALSTLLEDGVDIEQGVMVLCDAEGVNPILEVLCENRNEALRQRAVWAVERILRIDEIAYEISGNQNVGTALVEAFRHGDSRTRQIAERALKHVDKLPNFSGIFSKMGAA |
||||||||||
| Function | U-box domain-containing protein 43 [UniProtKB/Swiss-Prot:Q9SFX2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0009050 | OsLima_12g0009050.01 | Chr12 | 9488993 | 9493452 | - | NAM | ||
| CDS seq | atggcagaaggtcaggatggttattttgactcatccactgacagcttgcgtgttgagcctatttatgaatcattcttgtgtcctctctctaaacaagttatgcgggatcctgtcactatagagagtggtgccacatttgaacgtgaagctattctgaagtggttcaaggacaatggtagcggtgggaggagacttgtctgccctgttactaataaggaactcagcagtactgagttaaatccaagtattgctctgcggaataccattgatgaatggatgcatagaaatgaggcagcgaaacttgacgttgcccgtaagtcattaacctctgattgttcagaaggtgatattttgcaagctcttgagtatgttgcggagatatgccagagaagtagatccagtagacatttagtgaggaaagttgggttgattagcttgattactgacttgttgaagaatagcagtccaaaagtacgtcaaaaggcattgggaagccttcgctttgtagcaaaaaatgacaatgacaacaagaatgaaattgctgctggggacaatattcgcactattgtgaagttcttaaatcatgggcactcacaggagaaagaacaggctgtatctttgttatatgaactttcagaatataaacctctttcggaaaagattggcagtgtttctggtgctattcttattcttgtcggcttgtcgagtagtaaagtagaaaacctattgacagttgatagagctgagaagacattggaaaatttagagagctgcgaaaagaatgttagacagatggctgaaaacggtaggctgcaaccacttcttaggcttctccttgaagagcttgttttaagcaatgatgtgaaggtacttgtggcacaaacagcaggctctacactggtgaatatcatgaaaagtgggaacagggaagccagagaagcagctcttaaggcattgaatcaaatttcatcttatgataccagcgcaaagatacttattgaagcaggcattcttccacctctcatcacagatctcttcactgttggcagtaaccagcttccaatgagcatagttgatgccatcaaaagctctggtgctactgtcagtttgattcagtttgtagaagcacctcaaagagaagttcgcttggcttccatcaaacttttgaataatatatcaccttttatgggtcaagaactagctgaagcttttcgtggaaattttagtcaactcagcagcttggtcagggtaattgctgacagcaacggaatttctgaagaacaagcagcagctgctggcctcatagctgatcttcctccgcgggactcagtactcaccagacgtcttctacaagatggggccttttccacaatcataacaaaagtgacaatggttcggcaaggggatattcgtggtggccgttttgtcaatccatttcttgaaggtctagttagggtagtttcccggatcacatttatcttggatgatctagatatcattgatgttgctcgtgactacaatctcactcccctctttactgacctacttcagatgaatggtctcgacactgtccagattgtctctgctactgcactagagaatctctctcgccagtcaaagcttctaactaggatagtgccggctcccaacccaggattttgtttttcaatatttccatgcctcagtcagaagtccgtggcaactggcgcttgcagagtccatgttgggatatgttctgcaagggagagcttttgtctcttggaagggaaggcagtagaaaagttggtcgcttgcttggaccacaacaatgagaaagtggttgaagctgctctagcagcactgtccaccttgttggaggatggagtagacattgaacaaggtgtcatggtcttgtgtgatgcagagggggtcaatccaattctagaggtattatgcgagaatcgtaatgaggcacttcggcagcgagcagtgtgggcggtggagaggatcctgaggatagacgaaatagcttatgagatatctggaaaccaaaatgttggaacagcattagttgaagcattcaggcatggtgactccaggacaagacaaatagcagagcgagcactaaagcatgttgacaagctgcccaatttctctggaatattttccaagatgggggcagcatga
More
|
|||||||
| Protein seq | MAEGQDGYFDSSTDSLRVEPIYESFLCPLSKQVMRDPVTIESGATFEREAILKWFKDNGSGGRRLVCPVTNKELSSTELNPSIALRNTIDEWMHRNEAAKLDVARKSLTSDCSEGDILQALEYVAEICQRSRSSRHLVRKVGLISLITDLLKNSSPKVRQKALGSLRFVAKNDNDNKNEIAAGDNIRTIVKFLNHGHSQEKEQAVSLLYELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEELVLSNDVKVLVAQTAGSTLVNIMKSGNREAREAALKALNQISSYDTSAKILIEAGILPPLITDLFTVGSNQLPMSIVDAIKSSGATVSLIQFVEAPQREVRLASIKLLNNISPFMGQELAEAFRGNFSQLSSLVRVIADSNGISEEQAAAAGLIADLPPRDSVLTRRLLQDGAFSTIITKVTMVRQGDIRGGRFVNPFLEGLVRVVSRITFILDDLDIIDVARDYNLTPLFTDLLQMNGLDTVQIVSATALENLSRQSKLLTRIVPAPNPGFCFSIFPCLSQKSVATGACRVHVGICSARESFCLLEGKAVEKLVACLDHNNEKVVEAALAALSTLLEDGVDIEQGVMVLCDAEGVNPILEVLCENRNEALRQRAVWAVERILRIDEIAYEISGNQNVGTALVEAFRHGDSRTRQIAERALKHVDKLPNFSGIFSKMGAA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.346146 | 0.272261 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0277400 | RBH | 3.824124 | 4.093794 | 6.273542 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g17900 | RBH | 2.505672 | 2.667815 | 1.564724 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0277400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009300 | RBH | 1.277733 | 20.751329 | 7.378465 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009490 | RBH | 0.676180 | 2.679040 | 3.422666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009430 | RBH | 2.017212 | 10.074539 | 10.365617 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009220 | RBH | 0.322968 | 0.594502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009110 | RBH | 14.272163 | 18.517376 | 22.445402 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0142100 | SBH | 1.889377 | 9.0422475 | 2.3605535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009120 | RBH | 0.637362 | 0.852373 | 1.613083 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0155300 | RBH | 8.7230585 | 16.3559595 | 9.2184645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009040 | RBH | 0.028449 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009270 | RBH | 0.806219 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009250 | RBH | 7.374124 | 9.214890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009210 | RBH | 1.343111 | 0.0 | 2.471994 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009350 | RBH | 0.567466 | 4.994311 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009110 | RBH | 0.997110 | 3.634517 | 3.965300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009000 | RBH | 2.083142 | 20.763334 | 9.418961 |
