Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0008200 | OGI:12024450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:8334991-8337985 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttttcctgaacgaaaagctgacctactttcggaaatccttcttcggcctggtgggtaccatatcagcgatgctagtgaaggtggagaaaggctccttctgcaggatggaaggggtacggctaatgctggcgcgcgttttgctggttctccagctggtggtgctggtggtgatcctctcccctctcgcggtgttctacctgttcggcctcctcatcaccgccggcctctcgctgtggcgcttgctgcagcgcgactacggcgccggcgaggaggcggccaacctcgcgccggcgctcaacgtgctctactcgctggcgctcgtccagggcgccctcttcttctactacttcacctcgcgcctcctcgggaggcggctggcgaacttggtcgccggagtttaccgcttcggcggcaagggggaggaggaggatgacggcgggcgcgcgtcggtggtggagtacatgcggcagacgaggaacggatgcgagaaggacccgtcgtcggtgagagggaggaacctcgtcacgttcgccgtgacgatgatgaaggagtcgtcgtcgtcgtcgctgtcgtccggcgactactcctccggggctaggatcctcgacaagctcctgtcacaggcctggctgcgggagcagcacgagctcatcaggcagctcgtcgggtcgtccaccgacctgatggagaagctgctgcagacgctccggtgcacggggacccgcgaccgcggcgttcgggagcacgccgcgaggatcgtggcgcacctcgccggcgagatcacgctcgccaggttcccacaagggatccggtgcatatactcgctgctcgacgtgaccaccaccaccccgagaaaccagcagcaagacgacgacaacgacgatgacgacgacgacagcgcccagtcctccgatcactacaagaagctcatggtgcagggcctcgtcatcctccacaagctagccgccgcggagcacaaccggcggatcatcatcaacagcacccagggacggcagctgctctccatggccatggcgcccgtcagcgccgacctgctccaccgcatcgaccacgaagcgtggaacgacatcgtcgcctgctcgctgcagctcatgtgccggctcgtcaccgcccccggcgagaccggcgacaagctgcgttcccaggtgctgaacgacaaggacgccatcggcaccatggagaggatcctcaactgcgacggatgcaacgagaagaggctctatattctcgccattaacatcctcacgcagcttcccatggcggcgaagaacaaggtggtggacgaggcttcgagcatgagcgtcgagagcagaaggaaattcaccaagctacttctactcatctataccgacgaagagaaggacgcctttatgagacaaatggcaggtgaagcattggcaatgctgtccgaacgaagcaagagcgacgccaccatcatcttgaaagcaagtgacagcactctcaaggacctcaccgcaatgctcttggatgtaaatagcaacagaggatacagaatatgtgcagctgaaatcctggagcatctgtacattcgatacaccgagcaagatggctatctcaacaatctgacggaagccatgaaagatgtgttgccaaaggtgatcaatatcgaataaatgaatatattatttagtttgtttcatgttgattaactaataagagcaatgtctgtaacaATatatatatatatatatatatatatatatatatatcttgctgttcgtttcaggtgctcggagaaatttttcttgtgtcatggacgcataaagaaaagcaaccaggaatgacagaaaaaggaacagagggagttaatttctcggcacaaaaagctgacattgaaagtcaagatcccgttgcttgtcaacatgaaaaggttaaagaggaaaacgAaaaggttaaagaggaaaatgaaaaagttaaagagcaagatgaaaaggttaaagagcaaactgtggatatgaaactttatgcagctttactgtcacttagtgaggcaatatttcaaagattggtcaatgatgataaagatttggctgaactgactgataaaattgccccaggaggaggcactgcatttagcttcgccggaaagctcaaggagatggtagaaggaaacagtgaacaagcaacagccaattgcctgagaatgctgaagattactaccaggatgatcatatcattgataaatctcaatggagccaaagtcggagcagacctggagagcttgatgcattctctgttaaaagcttcagaaaagatgttggaactggagggcttcatgattttctctagcagcgatcgtaccgaaagcacgaatcctgccaacattctcgcttccctcgtgaaagAAGCaAGCACAGAAGCTTCTGGAGAAGAAGAGGCAGGCACAAACTACACCCGCTCCATCAATGGAGACCAGCTGATTGAGTAGACAGACTATCAACACGATCGTATGCTGATCTGCAGACTGTTGGCAGTAATCCCTGGAAACTGTCACCGTACAATCCCTGAAAACTGTCTCTGTAATCTGTATGTGTGCTGAAACTTATCTATCTTGTCAATTGTCCCATCTATTTCAAAAACTTTCAAGTTGAACTTTACAACAAACTGTTGAGCTTTATTGGCAGTTCGTATAATATCCTCTTGGAACCGTAGATAAAACCTATCTGAAGAGGTGAAGAGGCCAACGATCTGCATCAACCTACTGCACATTTAGTACTTGCTCACCTATGTTAGGGGTGAAACAACTATTACATAATTCGGGTATTTTGTATGCACTGATTTTAAAACAAGTTGGATAATCAGAGACACCAAattctgatgtactcgtctaataaatttatccaggacttcggacggaactcagcccatctgaagtattcagttagtttgttaggctttgttagatagggttgttagtcaattagaatcaatcaatcaagaaagttaaatc
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| CDS seq | atgctagtgaaggtggagaaaggctccttctgcaggatggaaggggtacggctaatgctggcgcgcgttttgctggttctccagctggtggtgctggtggtgatcctctcccctctcgcggtgttctacctgttcggcctcctcatcaccgccggcctctcgctgtggcgcttgctgcagcgcgactacggcgccggcgaggaggcggccaacctcgcgccggcgctcaacgtgctctactcgctggcgctcgtccagggcgccctcttcttctactacttcacctcgcgcctcctcgggaggcggctggcgaacttggtcgccggagtttaccgcttcggcggcaagggggaggaggaggatgacggcgggcgcgcgtcggtggtggagtacatgcggcagacgaggaacggatgcgagaaggacccgtcgtcggtgagagggaggaacctcgtcacgttcgccgtgacgatgatgaaggagtcgtcgtcgtcgtcgctgtcgtccggcgactactcctccggggctaggatcctcgacaagctcctgtcacaggcctggctgcgggagcagcacgagctcatcaggcagctcgtcgggtcgtccaccgacctgatggagaagctgctgcagacgctccggtgcacggggacccgcgaccgcggcgttcgggagcacgccgcgaggatcgtggcgcacctcgccggcgagatcacgctcgccaggttcccacaagggatccggtgcatatactcgctgctcgacgtgaccaccaccaccccgagaaaccagcagcaagacgacgacaacgacgatgacgacgacgacagcgcccagtcctccgatcactacaagaagctcatggtgcagggcctcgtcatcctccacaagctagccgccgcggagcacaaccggcggatcatcatcaacagcacccagggacggcagctgctctccatggccatggcgcccgtcagcgccgacctgctccaccgcatcgaccacgaagcgtggaacgacatcgtcgcctgctcgctgcagctcatgtgccggctcgtcaccgcccccggcgagaccggcgacaagctgcgttcccaggtgctgaacgacaaggacgccatcggcaccatggagaggatcctcaactgcgacggatgcaacgagaagaggctctatattctcgccattaacatcctcacgcagcttcccatggcggcgaagaacaaggtggtggacgaggcttcgagcatgagcgtcgagagcagaaggaaattcaccaagctacttctactcatctataccgacgaagagaaggacgcctttatgagacaaatggcaggtgaagcattggcaatgctgtccgaacgaagcaagagcgacgccaccatcatcttgaaagcaagtgacagcactctcaaggacctcaccgcaatgctcttggatgtaaatagcaacagaggatacagaatatgtgcagctgaaatcctggagcatctgtacattcgatacaccgagcaagatggctatctcaacaatctgacggaagccatgaaagatgtgttgccaaaggtgctcggagaaatttttcttgtgtcatggacgcataaagaaaagcaaccaggaatgacagaaaaaggaacagagggagttaatttctcggcacaaaaagctgacattgaaagtcaagatcccgttgcttgtcaacatgaaaaggttaaagaggaaaacgAaaaggttaaagaggaaaatgaaaaagttaaagagcaagatgaaaaggttaaagagcaaactgtggatatgaaactttatgcagctttactgtcacttagtgaggcaatatttcaaagattggtcaatgatgataaagatttggctgaactgactgataaaattgccccaggaggaggcactgcatttagcttcgccggaaagctcaaggagatggtagaaggaaacagtgaacaagcaacagccaattgcctgagaatgctgaagattactaccaggatgatcatatcattgataaatctcaatggagccaaagtcggagcagacctggagagcttgatgcattctctgttaaaagcttcagaaaagatgttggaactggagggcttcatgattttctctagcagcgatcgtaccgaaagcacgaatcctgccaacattctcgcttccctcgtgaaagAAGCaAGCACAGAAGCTTCTGGAGAAGAAGAGGCAGGCACAAACTACACCCGCTCCATCAATGGAGACCAGCTGATTGAGTAG
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| Protein seq | MLVKVEKGSFCRMEGVRLMLARVLLVLQLVVLVVILSPLAVFYLFGLLITAGLSLWRLLQRDYGAGEEAANLAPALNVLYSLALVQGALFFYYFTSRLLGRRLANLVAGVYRFGGKGEEEDDGGRASVVEYMRQTRNGCEKDPSSVRGRNLVTFAVTMMKESSSSSLSSGDYSSGARILDKLLSQAWLREQHELIRQLVGSSTDLMEKLLQTLRCTGTRDRGVREHAARIVAHLAGEITLARFPQGIRCIYSLLDVTTTTPRNQQQDDDNDDDDDDSAQSSDHYKKLMVQGLVILHKLAAAEHNRRIIINSTQGRQLLSMAMAPVSADLLHRIDHEAWNDIVACSLQLMCRLVTAPGETGDKLRSQVLNDKDAIGTMERILNCDGCNEKRLYILAINILTQLPMAAKNKVVDEASSMSVESRRKFTKLLLLIYTDEEKDAFMRQMAGEALAMLSERSKSDATIILKASDSTLKDLTAMLLDVNSNRGYRICAAEILEHLYIRYTEQDGYLNNLTEAMKDVLPKVLGEIFLVSWTHKEKQPGMTEKGTEGVNFSAQKADIESQDPVACQHEKVKEENEKVKEENEKVKEQDEKVKEQTVDMKLYAALLSLSEAIFQRLVNDDKDLAELTDKIAPGGGTAFSFAGKLKEMVEGNSEQATANCLRMLKITTRMIISLINLNGAKVGADLESLMHSLLKASEKMLELEGFMIFSSSDRTESTNPANILASLVKEASTEASGEEEAGTNYTRSINGDQLIE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0008200 | OsLima_12g0008200.01 | Chr12 | 8334991 | 8337985 | + | NAM | ||
| CDS seq | atgctagtgaaggtggagaaaggctccttctgcaggatggaaggggtacggctaatgctggcgcgcgttttgctggttctccagctggtggtgctggtggtgatcctctcccctctcgcggtgttctacctgttcggcctcctcatcaccgccggcctctcgctgtggcgcttgctgcagcgcgactacggcgccggcgaggaggcggccaacctcgcgccggcgctcaacgtgctctactcgctggcgctcgtccagggcgccctcttcttctactacttcacctcgcgcctcctcgggaggcggctggcgaacttggtcgccggagtttaccgcttcggcggcaagggggaggaggaggatgacggcgggcgcgcgtcggtggtggagtacatgcggcagacgaggaacggatgcgagaaggacccgtcgtcggtgagagggaggaacctcgtcacgttcgccgtgacgatgatgaaggagtcgtcgtcgtcgtcgctgtcgtccggcgactactcctccggggctaggatcctcgacaagctcctgtcacaggcctggctgcgggagcagcacgagctcatcaggcagctcgtcgggtcgtccaccgacctgatggagaagctgctgcagacgctccggtgcacggggacccgcgaccgcggcgttcgggagcacgccgcgaggatcgtggcgcacctcgccggcgagatcacgctcgccaggttcccacaagggatccggtgcatatactcgctgctcgacgtgaccaccaccaccccgagaaaccagcagcaagacgacgacaacgacgatgacgacgacgacagcgcccagtcctccgatcactacaagaagctcatggtgcagggcctcgtcatcctccacaagctagccgccgcggagcacaaccggcggatcatcatcaacagcacccagggacggcagctgctctccatggccatggcgcccgtcagcgccgacctgctccaccgcatcgaccacgaagcgtggaacgacatcgtcgcctgctcgctgcagctcatgtgccggctcgtcaccgcccccggcgagaccggcgacaagctgcgttcccaggtgctgaacgacaaggacgccatcggcaccatggagaggatcctcaactgcgacggatgcaacgagaagaggctctatattctcgccattaacatcctcacgcagcttcccatggcggcgaagaacaaggtggtggacgaggcttcgagcatgagcgtcgagagcagaaggaaattcaccaagctacttctactcatctataccgacgaagagaaggacgcctttatgagacaaatggcaggtgaagcattggcaatgctgtccgaacgaagcaagagcgacgccaccatcatcttgaaagcaagtgacagcactctcaaggacctcaccgcaatgctcttggatgtaaatagcaacagaggatacagaatatgtgcagctgaaatcctggagcatctgtacattcgatacaccgagcaagatggctatctcaacaatctgacggaagccatgaaagatgtgttgccaaaggtgctcggagaaatttttcttgtgtcatggacgcataaagaaaagcaaccaggaatgacagaaaaaggaacagagggagttaatttctcggcacaaaaagctgacattgaaagtcaagatcccgttgcttgtcaacatgaaaaggttaaagaggaaaacgAaaaggttaaagaggaaaatgaaaaagttaaagagcaagatgaaaaggttaaagagcaaactgtggatatgaaactttatgcagctttactgtcacttagtgaggcaatatttcaaagattggtcaatgatgataaagatttggctgaactgactgataaaattgccccaggaggaggcactgcatttagcttcgccggaaagctcaaggagatggtagaaggaaacagtgaacaagcaacagccaattgcctgagaatgctgaagattactaccaggatgatcatatcattgataaatctcaatggagccaaagtcggagcagacctggagagcttgatgcattctctgttaaaagcttcagaaaagatgttggaactggagggcttcatgattttctctagcagcgatcgtaccgaaagcacgaatcctgccaacattctcgcttccctcgtgaaagAAGCaAGCACAGAAGCTTCTGGAGAAGAAGAGGCAGGCACAAACTACACCCGCTCCATCAATGGAGACCAGCTGATTGAGTAG
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| Protein seq | MLVKVEKGSFCRMEGVRLMLARVLLVLQLVVLVVILSPLAVFYLFGLLITAGLSLWRLLQRDYGAGEEAANLAPALNVLYSLALVQGALFFYYFTSRLLGRRLANLVAGVYRFGGKGEEEDDGGRASVVEYMRQTRNGCEKDPSSVRGRNLVTFAVTMMKESSSSSLSSGDYSSGARILDKLLSQAWLREQHELIRQLVGSSTDLMEKLLQTLRCTGTRDRGVREHAARIVAHLAGEITLARFPQGIRCIYSLLDVTTTTPRNQQQDDDNDDDDDDSAQSSDHYKKLMVQGLVILHKLAAAEHNRRIIINSTQGRQLLSMAMAPVSADLLHRIDHEAWNDIVACSLQLMCRLVTAPGETGDKLRSQVLNDKDAIGTMERILNCDGCNEKRLYILAINILTQLPMAAKNKVVDEASSMSVESRRKFTKLLLLIYTDEEKDAFMRQMAGEALAMLSERSKSDATIILKASDSTLKDLTAMLLDVNSNRGYRICAAEILEHLYIRYTEQDGYLNNLTEAMKDVLPKVLGEIFLVSWTHKEKQPGMTEKGTEGVNFSAQKADIESQDPVACQHEKVKEENEKVKEENEKVKEQDEKVKEQTVDMKLYAALLSLSEAIFQRLVNDDKDLAELTDKIAPGGGTAFSFAGKLKEMVEGNSEQATANCLRMLKITTRMIISLINLNGAKVGADLESLMHSLLKASEKMLELEGFMIFSSSDRTESTNPANILASLVKEASTEASGEEEAGTNYTRSINGDQLIE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0261300 | RBH | 0.258535 | 0.520964 | 0.210631 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16080 | RBH | 0.147020 | 0.249923 | 0.091188 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0261300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008520 | RBH | 0.0 | 0.0 | 2.381600 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008630 | RBH | 0.0 | 0.0 | 1.344174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008660 | RBH | 0.0 | 0.0 | 0.697189 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008370 | RBH | 0.364944 | 0.0 | 10.389284 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0126800 | SBH | 0.8899125 | 0.2594345 | 0.119856 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008280 | RBH | 0.0 | 0.0 | 0.323165 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0137000 | RBH | 2.526208 | 0.017866 | 0.582012 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008510 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008380 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008400 | RBH | 0.0 | 0.0 | 0.433989 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008260 | RBH | 0.0 | 0.0 | 0.822715 |
