Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0007120 | OGI:12018330 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:6366587-6367242 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaattgctctttatctgatgtgtgtgaaattcgatcgatataatgattggccactgatcttgaagattttgttttcgattggaagaagacgaaataatgttgtgcaaattctcacataccacagatggaaaatttgtctttgagaaggtattttgagtagttttgctatgattttatttgccctgggacacccaaaaattgtgtaattggctgtgaaacactgtaaaatcgtatcgttgctgatggacactacaaaattcatgtaatttattgtatgacatccgagataatattttattatttctgataaaaaaagatgggagagaaattttaaaaagacaaatttgccctcagccctatctacaaatgaatgatctcgaagcggatctttggtatgagttcgttcaatttatgtgtttcttacgggcgcatggaaccagtggtcgatgtcccacgcgagaggcgaggcggaatcggcatggaggtagagcacgttgccgtaggcgtcgacgcagaacagcaccgggtcgaacccggcgttgccgaggtggtcgagctgcttccacagcaggttcgtgaaccgcagcgggttcgccgtcggcaccgcctccacgtcggccaccaagaacatctcgttcagatccttcgcccgcat
More
|
||||||||||
| CDS seq | atgcgggcgaaggatctgaacgagatgttcttggtggccgacgtggaggcggtgccgacggcgaacccgctgcggttcacgaacctgctgtggaagcagctcgaccacctcggcaacgccgggttcgacccggtgctgttctgcgtcgacgcctacggcaacgtgctctacctccatgccgattccgcctcgcctctcgcgtgggacatcgaccactggttccatgcgcccataaagagcaattga |
||||||||||
| Protein seq | MRAKDLNEMFLVADVEAVPTANPLRFTNLLWKQLDHLGNAGFDPVLFCVDAYGNVLYLHADSASPLAWDIDHWFHAPIKSN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0007120 | OsLima_12g0007120.01 | Chr12 | 6366587 | 6367242 | - | NAM | ||
| CDS seq | atgcgggcgaaggatctgaacgagatgttcttggtggccgacgtggaggcggtgccgacggcgaacccgctgcggttcacgaacctgctgtggaagcagctcgaccacctcggcaacgccgggttcgacccggtgctgttctgcgtcgacgcctacggcaacgtgctctacctccatgccgattccgcctcgcctctcgcgtgggacatcgaccactggttccatgcgcccataaagagcaattga
More
|
|||||||
| Protein seq | MRAKDLNEMFLVADVEAVPTANPLRFTNLLWKQLDHLGNAGFDPVLFCVDAYGNVLYLHADSASPLAWDIDHWFHAPIKSN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0176500 | SBH | 0.0 | 0.0 | 3.363760 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08150 | SBH | 0.0 | 0.0 | 0.547924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0176500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005610 | SBH | 0.0 | 10.685126 | 0.711793 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005300 | SBH | 0.0 | 4.282649 | 0.239162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005560 | SBH | 0.0 | 12.604956 | 0.496326 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0100200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0105200 | RBH | 0 | 0 | 0.030249 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005190 | RBH | 0.0 | 0.093866 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005400 | SBH | 0.0 | 6.487444 | 0.644300 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007240 | RBH | 0.0 | 0.0 | 0.0 |
