Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006790 | OGI:12016380 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5856423-5857505 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgcaagactaactgatgagtaattaactaaacagagaatataacattgtgatcactatgcaagagtgtgtacctaacttattaagacaagtcgatcggtcagtcccgatcatcttggaaatctattagtcctatataaagtttatgtgcagtcgtgtagaaaatatataggcttgaactaagagagaagaacaaacacaatgaactatgacaatcgcatgttttatttctataccataatcaaaggccattcggtaggaaagaattaggagttgtgtggttcatggccacactttaccacaccatactttcggtaatcacagtttgttacgcatgtgtctggttcgctgtcatagttgtggcttgccgcttgccacacctttttagtagtatgacccacatatcataaacttttttttaactttgtcatactttgtggttagaaatttatccaacatacTtttgtggctgccacaacttatctaatcttagatgtggtaatgtgtgaccggcaaccaaacaaacaatagaagttatgcacatggcacaaggagtgaggaaaaaaagataatatagaaaatttccttttgtatatagtatgatatatggaagcgcaattaatacatgcatggaaatatataaaaacattattgcctcacactgcagcttccactggtcgtaggccaggctgtagtacacgcagatcgaggtattacataTttgcatggCTctcaaacatcacatgcaaataaatattttatttgaaatatatcttaagttgtagagaagaaactctgtaggaacgataactatttcattatatgctgttggttggttaaaagtaaactaataaccaacggcgtacagcttataatcatggcacagtagtaggcggtgggcatgaatattggcctggattgcaggtcggatacggagtcggaagcagtccactttgaagcaacaccctcgcggcggaggccatcaccggcgcctccagcagcGccgccgccaagacgaatagcatcaggacgagcaccgccgccagccgccggccaCcggtggccctaagcaccgccgccat
More
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| CDS seq | atggcggcggtgcttagggccaccgGtggccggcggctggcggcggtgctcgtcctgatgctattcgtcttggcggcggCgctgctggaggcgccggtgatggcctccgccgcgagggtgttgcttcaaagtggactgcttccgactcccctggcctacgaccagtggaagctgcagtttagtcttgcataa |
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| Protein seq | MAAVLRATGGRRLAAVLVLMLFVLAAALLEAPVMASAARVLLQSGLLPTPLAYDQWKLQFSLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006790 | OsLima_12g0006790.01 | Chr12 | 5856423 | 5857505 | - | NAM | ||
| CDS seq | atggcggcggtgcttagggccaccgGtggccggcggctggcggcggtgctcgtcctgatgctattcgtcttggcggcggCgctgctggaggcgccggtgatggcctccgccgcgagggtgttgcttcaaagtggactgcttccgactcccctggcctacgaccagtggaagctgcagtttagtcttgcataa |
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| Protein seq | MAAVLRATGGRRLAAVLVLMLFVLAAALLEAPVMASAARVLLQSGLLPTPLAYDQWKLQFSLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0221400 | RBH | 0.327710 | 0.336074 | 11.181643 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11990 | RBH | 0.604772 | 0.0 | 3.169161 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0221400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007020 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007110 | RBH | 0.000000 | 0.0 | 0.541815 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007110 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006940 | SBH | 0.0 | 0.0 | 11.148461 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0089800 | RBH | 0.613916 | 0.097328 | 0.082869 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0095700 | RBH | 1.0676785 | 1.5122965 | 0.083661 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006880 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006900 | RBH | 0.000000 | 0.0 | 1.193115 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006920 | RBH | 0.0 | 0.0 | 2.940714 |
