Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006540 | OGI:12014990 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5484487-5489235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taaagatagatagatatatccccaaggaaataaacttacaataatctcctcttagtccattcactctctcctgttatatttatgtagttgtagtctgtgtctgtcatcagtaaatggccaccgtcaataaatacacgaagtaacagcagtgggacttaaaaatatttgttcttaaagcagataacagtgtaagcttaagtgatgaacaaaagaaagctaaatcagggacatcgcatcatactcttaacaggacaagaagacggcagtaggtgaaaagggtaacaaagtaagagcagtaaattgactatgacatcaagcaagcacgcttcaaagcaagcaagaatgtgagtgtggagggtggagatacctattctcactctgaggatgtgggcaatcatgcttctttcagggcttccatgttttctaaatttcttcttcaactctgaaccacattccgaaatatccagctccaacagagaggtgggaaaatctggaagtgaaccgaggagttggccaacaccagatagcggcaatttctggagggaggttaggtctcgcatgctgggttggagagattctaaggacttgactttgcgtatgtgtagggatttgagagatgcactgttctgcagcagccaacgatcaggtaagctcttcatctgtgacgcatcttcaatttctaagtgttcagtgtggcagagactcttgagaggctcaacaagcagcagggatggaagatcaattgtaagagagctgatacgcagggaacttcttgaatccaccagatgctcttcttcaccaccagatacatatggatttacggatgaaccaaattttgtgagtttagcacaacgtctgattgttaattcagagagggatggaagggattcaagcccacccaaggatgacagattcccacatttctgtatgatgatgatctgcagcgaggtgagattcctactgaaagcttctgcagaggggagggttaccaggttcgagcagttattcagattcaatacggagagattgatgagttgttgctcttgcagtgacacaaccactatacgctcatagtcaccacatgatctgatatatagatcattaagtgatggtggcaggaacatttccccagcacctctcggtgccctcaattcgggacagcctcctattcttagagatttgagcatattcattgcttcaaatgatattgatgcagactccagatgtatacagttgtggatgtgcaggtttcttagagctaccatgtgctgcttctgctcaagaaagctgtcatccagggaacataagcatgggcaactgctgatagcaacctcctgcaattgggctaaaattgtttcattgctctcgctgcatagcttgcccatccttggaagtttagtccaattaacattttttattttaaatgacatcagactaggaggtagaagaggtaattcctgcagtttggggcattgttttatttgcagatatagaagcgatgatggcaggaacttttctccagtacctctcagtgccctcaatttcggacagcgtctgatatatagatatctgagcatgatcattgcttcaaatggtatcgatgcagactccagatgtatacagttgtagatgtgcaggtttcttagagctaccatgtgctgcttctgctcaagaaagctgtcttccagggaacttaagcatggacaatcattgataacaacctcctgcaattgggctaaaattgtttcattgctcttgctgcatagcttgcccatccttggaagtttagtccaattaacttctattatttgaaatgataccagactaggaggtagaagaggtaattcctgcagctctgggcattgttctatttccagactaagaagatttggaggtagcaacagctccatggaactactactagacatatgagaatgccggccaatctgctgtagctttggaagatttctcaacaaaagatatctgagcagtgttagctctccaagtgacggtagttgttcccagtttatacaactttctaatttgattgataccagttttctgacagaaaggttctcaatccaaaatggaacgacgcacccttcatagccataaattcttagattcctgatattagtgtgtggctcaaggtgttgaagaaccaactcgtctacagtgtcatgttcaccagtatgtggtgaccactcaagagacagagaatggagatgctgtttttcattcagtttagcattgatggcctcttcgtggttctcaatattctcaacaccttgaatatttagctcacgaagacaatgtaagttcttgattgagctcactttgttgcccccactttctttcacatggtatatactcaatctccgaattgattcaagtctgcttataggcagcataccaaacaattcgtacgtatagtgcccataggctacatgccgcaaacgataaaggttcaacataaatctctcttgttttgctacacacagcaagctcctacgacaaggaaataccgtcgtcgggctagaaatcgaaagtagtaccaacaagtgataaagtttggcaatatgataaatcccttttgatgagatgccaaatatgtcgatgtagcgaaggtgtttcaactttccaaacttgctggaaaaatcaaatcttattctcaaccttgaatgaaatagccgtaatgattttgtgctttcaatgattttttgaagtgtattctttgtatccttatcaagcttagattcagtaacaatgatgatactgcgaagattcttaaattgggatattttcttgaccacatcgatagaaaattgaggaatgcataaaatggatatgtgtctgactgtgtcccgtatatctttaaacttgacaggactagttattcttgcgcattcaccataggatacatttcttgctaattcatgcattaagtcatgcatgacatagtattcttcttggtctagaccatatctatatactctggactttagatcatagtatttttcttggtctagaccatatctatatgctctggactttagatcaaagaatgactttctagttaggtcagccaatattcgttctccaatatcctcgaaatttagtgtctcatttgtggcctgcgggatcaatcctgaacacatccacatatgcacaagatcttccttgcgaaatttgtggtcctcaggaaataagctacaaaacctaaagcaaatctgtaactcagttggaagatgttggtagcttaatttgagaaccttcataatgtcaatgtcagaccctttaaaatgttccaagtgtatgtgcaagaaattttcccagtatgcaacgctcatgttaccttgcaaatgtccacaggtgaccttaattaccaagggacatcctcccagtttccttgcaatttgttctccagtctttttgaagtggctatagtcctgcaaattcaaactagaaaatacatgatgattgaagagttcaatattttcgtcttcttccagttctcctaatatcaagcaatctcttgcaactcccattgcttttgcagccatgtctgccacggatgccatacgggttgtcaacagaattctgctcccattctttccggaccgcagaggagcaaacaacttttcccattcatctcttttcccttcttcccaaacgtcatccatgacaagaaggaacttaacagagtttagtttctctttaagttcttgctgtagtgcttccaaatgtttattgctaggttctccctttgtagcagattccaaaattttccttgtcactgaggttgcatcaaaactagttgatacagtaatccaaatgaccttgaaatgctttacaacctcatcttgttggcatatgctctgagccaaagtagtcttccccataccaccatgaccaattactgagaagataggaacatgattagcactaggcacaatttcagactctttaactgatgtgtccttggtcaaccactcaagaatccttttcttctctgattctcggccaacaaacttatctaccgttaacatggaacctgtctgacgatcattgctgctagccaaatgtcccagcttttgactgctagaggtggctccattgatgcatctcacaacttcaagaaattttgtggtacctgcagcagccttgtctaaaccatccatagctttctttagcctcttgagtgtaccacgatgagtaaattgattcacagacttatccaaaacacggacatccttaatggatttaacaactttatgcttccacttagcaagaggtgaaccccagtcactaaccttgtaatccttggcttcctcctcaagctcatagtactcgagctcatcgatggcgtcctcggcttcctcgactgcatccctgagcttccagaaccactgatccagcgctacgctgtgttccttgaatcgatctggattgacaacatcaagaactgcttggatctgcagcatcccttcctctagcttgttcttcatctcctccatgcttttagcgctgaggtagccatcaaggtagtttaaggccctggtgataatctccttgatgacaggagctgccaccgatttcccagcaaacaccactgcagcagaagtagccatggcggcgtggagaattgctggttgctagagaaagcttctgttgaagctggagaagcagctatgtggatgaattgttttcctttttcaaatggattgcgtaaagtctcatactcaattt
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| CDS seq | atggctacttctgctgcagtggtgtttgctgggaaatcggtggcagctcctgtcatcaaggagattatcaccagggccttaaactaccttgatggctacctcagcgctaaaagcatggaggagatgaagaacaagctagaggaagggatgctgcagatccaagcagttcttgatgttgtcaatccagatcgattcaaggaacacagcgtagcgctggatcagtggttctggaagctcagggatgcagtcgaggaagccgaggacgccatcgatgagctcgagtactatgagcttgaggaggaagccaaggattacaaggttagtgactggggttcacctcttgctaagtggaagcataaagttgttaaatccattaaggatgtccgtgttttggataagtctgtgaatcaatttactcatcgtggtacactcaagaggctaaagaaagctatggatggtttagacaaggctgctgcaggtaccacaaaatttcttgaagttgtgagatgcatcaatggagccacctctagcagtcaaaagctgggacatttggctagcagcaatgatcgtcagacaggttccatgttaacggtagataagtttgttggccgagaatcagagaagaaaaggattcttgagtggttgaccaaggacacatcagttaaagagtctgaaattgtgcctagtgctaatcatgttcctatcttctcagtaattggtcatggtggtatggggaagactactttggctcagagcatatgccaacaagatgaggttgtaaagcatttcaaggtcatttggattactgtatcaactagttttgatgcaacctcagtgacaaggaaaattttggaatctgctacaaagggagaacctagcaataaacatttggaagcactacagcaagaacttaaagagaaactaaactctgttaagttccttcttgtcatggatgacgtttgggaagaagggaaaagagatgaatgggaaaagttgtttgctcctctgcggtccggaaagaatgggagcagaattctgttgacaacccgtatggcatccgtggcagacatggctgcaaaagcaatgggagttgcaagagattgcttgatattaggagaactggaagaagacgaaaatattgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttcaaaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtcacctgtggacatttgcaaggtaacatgagcgttgcatactgggaaaatttcttgcacatacacttggaacattttaaagggtctgacattgacattatgaaggttctcaaattaagctaccaacatcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccacaaatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatcccgcaggccacaaatgagacactaaatttcgaggatattggagaacgaatattggctgacctaactagaaagtcattctttgatctaaagtccagagcatatagatatggtctagaccaagaaaaatactatgatctaaagtccagagtatatagatatggtctagaccaagaagaatactatgtcatgcatgacttaatgcatgaattagcaagaaatgtatcctatggtgaatgcgcaagaataactagtcctgtcaagtttaaagatatacgggacacagtcagacacatatccattttatgcattcctcaattttctatcgatgtggtcaagaaaatatcccaatttaagaatcttcgcagtatcatcattgttactgaatctaagcttgataaggatacaaagaatacacttcaaaaaatcattgaaagcacaaaatcattacggctatttcattcaaggttgagaataagatttgatttttccagcaagtttggaaagttgaaacaccttcgctacatcgacatatttggcatctcatcaaaagggatttatcatattgccaaactttatcacttgttggtactactttcgatttctagcccgacgacggtatttccttgtcgtaggagcttgctgtgtgtagcaaaacaagagagatttatgttgaacctttatcgtttgcggcatgtagcctatgggcactatacgtacgaattgtttggtatgctgcctataagcagacttgaatcaattcggagattgagtatataccatgtgaaagaaagtgggggcaacaaagtgagctcaatcaagaacttacattgtcttcgtgagctaaatattcaaggtgttgagaatattgagaaccacgaagaggccatcaatgctaaactgaatgaaaaacagcatctccattctctgtctcttgagtggtcaccacatactggtgaacatgacactgtagacgagttggttcttcaacaccttgagccacacactaatatcaggaatctaagaatttatggctatgaagggtgcgtcgttccattttggattgagaacctttctgtcagaaaactggtatcaatcaaattagaaagttgtataaactgggaacaactaccgtcacttggagagctaacactgctcagatatcttttgttgagaaatcttccaaagctacagcagattggccggcattctcatatgtctagtagtagttccatggagctgttgctacctccaaatcttcttagtctggaaatagaacaatgcccagagctgcaggaattacctcttctacctcctagtctggtatcatttcaaataatagaagttaattggactaaacttccaaggatgggcaagctatgcagcaagagcaatgaaacaattttagcccaattgcaggaggttgttatcaatgattgtccatgcttaagttccctggaagacagctttcttgagcagaagcagcacatggtagctctaagaaacctgcacatctacaactgtatacatctggagtctgcatcgataccatttgaagcaatgatcatgctcagatatctatatatcagacgctgtccgaaattgagggcactgagaggtactggagaaaagttcctgccatcatcgcttctatatctgcaaataaaacaatgccccaaactgcaggaattacctcttctacctcctagtctgatgtcatttaaaataaaaaatgttaattggactaaacttccaaggatgggcaagctatgcagcgagagcaatgaaacaattttagcccaattgcaggaggttgctatcagcagttgcccatgcttatgttccctggatgacagctttcttgagcagaagcagcacatggtagctctaagaaacctgcacatccacaactgtatacatctggagtctgcatcaatatcatttgaagcaatgaatatgctcaaatctctaagaataggaggctgtcccgaattgagggcaccgagaggtgctggggaaatgttcctgccaccatcacttaatgatctatatatcagatcatgtggtgactatgagcgtatagtggttgtgtcactgcaagagcaacaactcatcaatctctccgtattgaatctgaataactgctcgaacctggtaaccctcccctctgcagaagctttcagtaggaatctcacctcgctgcagatcatcatcatacagaaatgtgggaatctgtcatccttgggtgggcttgaatcccttccatccctctctgaattaacaatcagacgttgtgctaaactcacaaaatttggttcatccgtaaatccatatgtatctggtggtgaagaagagcatctggtggattcaagaagttccctgcgtatcagctctcttacaattgatcttccatccctgctgcttgttgagcctctcaagagtctctgccacactgaacacttagaaattgaagatgcgtcacagatgaagagcttacctgatcgttggctgctgcagaacagtgcatctctcaaatccctacacatacgcaaagtcaagtccttagaatctctccaacccagcatgcgagacctaacctccctccagaaattgccgctatctggtgttggccaactcctcggttcacttccagattttcccacctctctgttggagctggatatttcggaatgtggttcagagttgaagaagaaatttagaaaacatggaagccctgaaagaagcatgattgcccacatcctcagagtgagaataggtatctccaccctccacactcacattcttgcttgctttgaagcgtgcttgcttgatgtcatagtcaatttactgctcttactttgttacccttttcacctactgccgtcttcttgtcctgttaagagtatgatgcgatgtccctga
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| Protein seq | MATSAAVVFAGKSVAAPVIKEIITRALNYLDGYLSAKSMEEMKNKLEEGMLQIQAVLDVVNPDRFKEHSVALDQWFWKLRDAVEEAEDAIDELEYYELEEEAKDYKVSDWGSPLAKWKHKVVKSIKDVRVLDKSVNQFTHRGTLKRLKKAMDGLDKAAAGTTKFLEVVRCINGATSSSQKLGHLASSNDRQTGSMLTVDKFVGRESEKKRILEWLTKDTSVKESEIVPSANHVPIFSVIGHGGMGKTTLAQSICQQDEVVKHFKVIWITVSTSFDATSVTRKILESATKGEPSNKHLEALQQELKEKLNSVKFLLVMDDVWEEGKRDEWEKLFAPLRSGKNGSRILLTTRMASVADMAAKAMGVARDCLILGELEEDENIELFNHHVFSSLNLQDYSHFKKTGEQIARKLGGCPLVIKVTCGHLQGNMSVAYWENFLHIHLEHFKGSDIDIMKVLKLSYQHLPTELQICFRFCSLFPEDHKFRKEDLVHMWMCSGLIPQATNETLNFEDIGERILADLTRKSFFDLKSRAYRYGLDQEKYYDLKSRVYRYGLDQEEYYVMHDLMHELARNVSYGECARITSPVKFKDIRDTVRHISILCIPQFSIDVVKKISQFKNLRSIIIVTESKLDKDTKNTLQKIIESTKSLRLFHSRLRIRFDFSSKFGKLKHLRYIDIFGISSKGIYHIAKLYHLLVLLSISSPTTVFPCRRSLLCVAKQERFMLNLYRLRHVAYGHYTYELFGMLPISRLESIRRLSIYHVKESGGNKVSSIKNLHCLRELNIQGVENIENHEEAINAKLNEKQHLHSLSLEWSPHTGEHDTVDELVLQHLEPHTNIRNLRIYGYEGCVVPFWIENLSVRKLVSIKLESCINWEQLPSLGELTLLRYLLLRNLPKLQQIGRHSHMSSSSSMELLLPPNLLSLEIEQCPELQELPLLPPSLVSFQIIEVNWTKLPRMGKLCSKSNETILAQLQEVVINDCPCLSSLEDSFLEQKQHMVALRNLHIYNCIHLESASIPFEAMIMLRYLYIRRCPKLRALRGTGEKFLPSSLLYLQIKQCPKLQELPLLPPSLMSFKIKNVNWTKLPRMGKLCSESNETILAQLQEVAISSCPCLCSLDDSFLEQKQHMVALRNLHIHNCIHLESASISFEAMNMLKSLRIGGCPELRAPRGAGEMFLPPSLNDLYIRSCGDYERIVVVSLQEQQLINLSVLNLNNCSNLVTLPSAEAFSRNLTSLQIIIIQKCGNLSSLGGLESLPSLSELTIRRCAKLTKFGSSVNPYVSGGEEEHLVDSRSSLRISSLTIDLPSLLLVEPLKSLCHTEHLEIEDASQMKSLPDRWLLQNSASLKSLHIRKVKSLESLQPSMRDLTSLQKLPLSGVGQLLGSLPDFPTSLLELDISECGSELKKKFRKHGSPERSMIAHILRVRIGISTLHTHILACFEACLLDVIVNLLLLLCYPFHLLPSSCPVKSMMRCP |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006540 | OsLima_12g0006540.01 | Chr12 | 5484708 | 5489117 | - | NAM | ||
| CDS seq | atggctacttctgctgcagtggtgtttgctgggaaatcggtggcagctcctgtcatcaaggagattatcaccagggccttaaactaccttgatggctacctcagcgctaaaagcatggaggagatgaagaacaagctagaggaagggatgctgcagatccaagcagttcttgatgttgtcaatccagatcgattcaaggaacacagcgtagcgctggatcagtggttctggaagctcagggatgcagtcgaggaagccgaggacgccatcgatgagctcgagtactatgagcttgaggaggaagccaaggattacaaggttagtgactggggttcacctcttgctaagtggaagcataaagttgttaaatccattaaggatgtccgtgttttggataagtctgtgaatcaatttactcatcgtggtacactcaagaggctaaagaaagctatggatggtttagacaaggctgctgcaggtaccacaaaatttcttgaagttgtgagatgcatcaatggagccacctctagcagtcaaaagctgggacatttggctagcagcaatgatcgtcagacaggttccatgttaacggtagataagtttgttggccgagaatcagagaagaaaaggattcttgagtggttgaccaaggacacatcagttaaagagtctgaaattgtgcctagtgctaatcatgttcctatcttctcagtaattggtcatggtggtatggggaagactactttggctcagagcatatgccaacaagatgaggttgtaaagcatttcaaggtcatttggattactgtatcaactagttttgatgcaacctcagtgacaaggaaaattttggaatctgctacaaagggagaacctagcaataaacatttggaagcactacagcaagaacttaaagagaaactaaactctgttaagttccttcttgtcatggatgacgtttgggaagaagggaaaagagatgaatgggaaaagttgtttgctcctctgcggtccggaaagaatgggagcagaattctgttgacaacccgtatggcatccgtggcagacatggctgcaaaagcaatgggagttgcaagagattgcttgatattaggagaactggaagaagacgaaaatattgaactcttcaatcatcatgtattttctagtttgaatttgcaggactatagccacttcaaaaagactggagaacaaattgcaaggaaactgggaggatgtcccttggtaattaaggtcacctgtggacatttgcaaggtaacatgagcgttgcatactgggaaaatttcttgcacatacacttggaacattttaaagggtctgacattgacattatgaaggttctcaaattaagctaccaacatcttccaactgagttacagatttgctttaggttttgtagcttatttcctgaggaccacaaatttcgcaaggaagatcttgtgcatatgtggatgtgttcaggattgatcccgcaggccacaaatgagacactaaatttcgaggatattggagaacgaatattggctgacctaactagaaagtcattctttgatctaaagtccagagcatatagatatggtctagaccaagaaaaatactatgatctaaagtccagagtatatagatatggtctagaccaagaagaatactatgtcatgcatgacttaatgcatgaattagcaagaaatgtatcctatggtgaatgcgcaagaataactagtcctgtcaagtttaaagatatacgggacacagtcagacacatatccattttatgcattcctcaattttctatcgatgtggtcaagaaaatatcccaatttaagaatcttcgcagtatcatcattgttactgaatctaagcttgataaggatacaaagaatacacttcaaaaaatcattgaaagcacaaaatcattacggctatttcattcaaggttgagaataagatttgatttttccagcaagtttggaaagttgaaacaccttcgctacatcgacatatttggcatctcatcaaaagggatttatcatattgccaaactttatcacttgttggtactactttcgatttctagcccgacgacggtatttccttgtcgtaggagcttgctgtgtgtagcaaaacaagagagatttatgttgaacctttatcgtttgcggcatgtagcctatgggcactatacgtacgaattgtttggtatgctgcctataagcagacttgaatcaattcggagattgagtatataccatgtgaaagaaagtgggggcaacaaagtgagctcaatcaagaacttacattgtcttcgtgagctaaatattcaaggtgttgagaatattgagaaccacgaagaggccatcaatgctaaactgaatgaaaaacagcatctccattctctgtctcttgagtggtcaccacatactggtgaacatgacactgtagacgagttggttcttcaacaccttgagccacacactaatatcaggaatctaagaatttatggctatgaagggtgcgtcgttccattttggattgagaacctttctgtcagaaaactggtatcaatcaaattagaaagttgtataaactgggaacaactaccgtcacttggagagctaacactgctcagatatcttttgttgagaaatcttccaaagctacagcagattggccggcattctcatatgtctagtagtagttccatggagctgttgctacctccaaatcttcttagtctggaaatagaacaatgcccagagctgcaggaattacctcttctacctcctagtctggtatcatttcaaataatagaagttaattggactaaacttccaaggatgggcaagctatgcagcaagagcaatgaaacaattttagcccaattgcaggaggttgttatcaatgattgtccatgcttaagttccctggaagacagctttcttgagcagaagcagcacatggtagctctaagaaacctgcacatctacaactgtatacatctggagtctgcatcgataccatttgaagcaatgatcatgctcagatatctatatatcagacgctgtccgaaattgagggcactgagaggtactggagaaaagttcctgccatcatcgcttctatatctgcaaataaaacaatgccccaaactgcaggaattacctcttctacctcctagtctgatgtcatttaaaataaaaaatgttaattggactaaacttccaaggatgggcaagctatgcagcgagagcaatgaaacaattttagcccaattgcaggaggttgctatcagcagttgcccatgcttatgttccctggatgacagctttcttgagcagaagcagcacatggtagctctaagaaacctgcacatccacaactgtatacatctggagtctgcatcaatatcatttgaagcaatgaatatgctcaaatctctaagaataggaggctgtcccgaattgagggcaccgagaggtgctggggaaatgttcctgccaccatcacttaatgatctatatatcagatcatgtggtgactatgagcgtatagtggttgtgtcactgcaagagcaacaactcatcaatctctccgtattgaatctgaataactgctcgaacctggtaaccctcccctctgcagaagctttcagtaggaatctcacctcgctgcagatcatcatcatacagaaatgtgggaatctgtcatccttgggtgggcttgaatcccttccatccctctctgaattaacaatcagacgttgtgctaaactcacaaaatttggttcatccgtaaatccatatgtatctggtggtgaagaagagcatctggtggattcaagaagttccctgcgtatcagctctcttacaattgatcttccatccctgctgcttgttgagcctctcaagagtctctgccacactgaacacttagaaattgaagatgcgtcacagatgaagagcttacctgatcgttggctgctgcagaacagtgcatctctcaaatccctacacatacgcaaagtcaagtccttagaatctctccaacccagcatgcgagacctaacctccctccagaaattgccgctatctggtgttggccaactcctcggttcacttccagattttcccacctctctgttggagctggatatttcggaatgtggttcagagttgaagaagaaatttagaaaacatggaagccctgaaagaagcatgattgcccacatcctcagagtgagaataggtatctccaccctccacactcacattcttgcttgctttgaagcgtgcttgcttgatgtcatagtcaatttactgctcttactttgttacccttttcacctactgccgtcttcttgtcctgttaagagtatgatgcgatgtccctga
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| Protein seq | MATSAAVVFAGKSVAAPVIKEIITRALNYLDGYLSAKSMEEMKNKLEEGMLQIQAVLDVVNPDRFKEHSVALDQWFWKLRDAVEEAEDAIDELEYYELEEEAKDYKVSDWGSPLAKWKHKVVKSIKDVRVLDKSVNQFTHRGTLKRLKKAMDGLDKAAAGTTKFLEVVRCINGATSSSQKLGHLASSNDRQTGSMLTVDKFVGRESEKKRILEWLTKDTSVKESEIVPSANHVPIFSVIGHGGMGKTTLAQSICQQDEVVKHFKVIWITVSTSFDATSVTRKILESATKGEPSNKHLEALQQELKEKLNSVKFLLVMDDVWEEGKRDEWEKLFAPLRSGKNGSRILLTTRMASVADMAAKAMGVARDCLILGELEEDENIELFNHHVFSSLNLQDYSHFKKTGEQIARKLGGCPLVIKVTCGHLQGNMSVAYWENFLHIHLEHFKGSDIDIMKVLKLSYQHLPTELQICFRFCSLFPEDHKFRKEDLVHMWMCSGLIPQATNETLNFEDIGERILADLTRKSFFDLKSRAYRYGLDQEKYYDLKSRVYRYGLDQEEYYVMHDLMHELARNVSYGECARITSPVKFKDIRDTVRHISILCIPQFSIDVVKKISQFKNLRSIIIVTESKLDKDTKNTLQKIIESTKSLRLFHSRLRIRFDFSSKFGKLKHLRYIDIFGISSKGIYHIAKLYHLLVLLSISSPTTVFPCRRSLLCVAKQERFMLNLYRLRHVAYGHYTYELFGMLPISRLESIRRLSIYHVKESGGNKVSSIKNLHCLRELNIQGVENIENHEEAINAKLNEKQHLHSLSLEWSPHTGEHDTVDELVLQHLEPHTNIRNLRIYGYEGCVVPFWIENLSVRKLVSIKLESCINWEQLPSLGELTLLRYLLLRNLPKLQQIGRHSHMSSSSSMELLLPPNLLSLEIEQCPELQELPLLPPSLVSFQIIEVNWTKLPRMGKLCSKSNETILAQLQEVVINDCPCLSSLEDSFLEQKQHMVALRNLHIYNCIHLESASIPFEAMIMLRYLYIRRCPKLRALRGTGEKFLPSSLLYLQIKQCPKLQELPLLPPSLMSFKIKNVNWTKLPRMGKLCSESNETILAQLQEVAISSCPCLCSLDDSFLEQKQHMVALRNLHIHNCIHLESASISFEAMNMLKSLRIGGCPELRAPRGAGEMFLPPSLNDLYIRSCGDYERIVVVSLQEQQLINLSVLNLNNCSNLVTLPSAEAFSRNLTSLQIIIIQKCGNLSSLGGLESLPSLSELTIRRCAKLTKFGSSVNPYVSGGEEEHLVDSRSSLRISSLTIDLPSLLLVEPLKSLCHTEHLEIEDASQMKSLPDRWLLQNSASLKSLHIRKVKSLESLQPSMRDLTSLQKLPLSGVGQLLGSLPDFPTSLLELDISECGSELKKKFRKHGSPERSMIAHILRVRIGISTLHTHILACFEACLLDVIVNLLLLLCYPFHLLPSSCPVKSMMRCP
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006540 | OsLima_12g0006540.02 | Chr12 | 5484487 | 5489235 | - | IsoSeq | ||
| CDS seq | atgcagtcgaggaagccgaggacgccatcgatgagctcgagtactatgagcttgaggaggaagccaaggattacaaggttagtgactggggttcacctcttgctaagtggaagcataaagttgttaaatccattaaggatgtccgtgttttggataagt |
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| Protein seq | MQSRKPRTPSMSSSTMSLRRKPRITRLVTGVHLLLSGSIKLLNPLRMSVFWIS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.744642 | 0.426525 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0209901 | RBH | 10.624657 | 7.397429 | 10.810076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10710 | SBH | 7.322405 | 5.316416 | 1.880508 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0209901 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006850 | RBH | 2.626684 | 15.845294 | 14.796499 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006940 | RBH | 1.235062 | 2.145403 | 7.958333 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006920 | RBH | 7.314071 | 9.342802 | 25.476358 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006810 | RBH | 0.898889 | 0.404332 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006670 | SBH | 13.962980 | 11.342574 | 28.481133 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0085600 | RBH | 13.9355115 | 13.0148925 | 2.1809635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006640 | RBH | 1.546948 | 0.540524 | 2.025323 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0091400 | RBH | 10.8015765 | 16.1393895 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008840 | SBH | 0.021630 | 0.126688 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006800 | RBH | 1.812367 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006660 | RBH | 17.152287 | 19.560701 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006690 | RBH | 3.905411 | 0.0 | 1.699634 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006570 | RBH | 0.636942 | 12.695457 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006710 | RBH | 2.978663 | 1.063882 | 4.188571 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006680 | RBH | 2.904938 | 43.218353 | 4.945467 |
