Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006390 | OGI:12014510 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5266194-5271646 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttaccctggtatcgtacgtatagtatagaatgctcgtgggcatcttgctgccagatcacaccacgagagaaataacaaattttcagctgtacagataaaacaatcttcaaatagcagaaaatctcatgttttgcgataggtaggacttcatgatatttggcttgcactcgagtctattgaaccattcattgtcgcagaaaaccctaatatttttctggtcatgaccgggtgggtagtggaacgatatgttcatcagcttgtcgcggttctcaacaagaagcgccagcgacgacttaaattcacaaggcagcacacatatatcagacaattctggcagatcactgagatcgagatatgtaagccgagggaagatcacatgatctggtggattctccgcaagctccttatggtcgatcaaccgtttaaactgtgggcaatcatgaatgccgagttcctcgaggtacccaagctgcaatacccatgtggcgtgcgtcaattttgcacatttcttgatgtcaacccttcgaaggtttctcgccgcgttcagccatattactctctccagcacattgagattttccaagcagagatgttccaggttttggatcagctcctttccatcagacgtggccacaagctcctgcaagatgtcggaactagaaatggctagttctcccagatcattggagaacggttgcagttcggcgatcatgtatctgctggtggccggctggggttgatcatgtccaggcgagattggattgatgaagcttaagcagagcgaccttattcgcacttgcttctgcatcaactgcttcagaaatgccctattgtcacgcgtcgcatccaggcaaatcccaagaatcttcaacttctccgatgctctagcttcggccagttcacccagaaaattgtaaaggccaccagcagcagattttggacggtagggataatcgatgctgctgcagaaaaggtccagcacctgcaggtttacgagctgcgagatcaatcctgtcggtatctcgccaagactgcaagactgccgcagatgcaattgcttgagtttcgacagtttcccgagttcaattggcagcctagacatactccctcctttgatgcagaggtattcgagcttatgcagctcacagatctccattggaaatgtatctaaagacaccagttccagaaagctgatgtttgtcatctggccgatggacgaaaccttccacggatcaaggtaggagcgattgctttccatcgcaagcatctcaagctcaggccatgtatccttgggaggccattcttcccgagtccaatacccgttgttcattttgcgtatggttgcatcctgcacccatgctcgattcagcacgctccacttctcacctccagggCcccttacaacccacagcgccatgtcgcggatgatgtcgtgcatatcaacagaatagcttccagcgctctccaggagcgatgctccctgcagggaatcgatgacagactctcctccttcaaaaccgttggcggatgagtcgcttcttctcaatgtaaaatggagggaacagggtgcacgccagaaaacaaccccgtgcttcgtcgtcatgtagtccatcgaagctgtaccttaggatgttgaatatatcatcgtctccaactaggttattatggacctttgacttctccaacctgttgactgcatccacccacagtttataattcttcttcgtgcacatggatcgaccgatgacgcacagcactaatggcagaccaccgcacatttcggctacctgattaatgtagtagtaatagtagtatccatgtaagtaagttagcacaaaaaccagtggaatacatatgtagtaTGtgtgtgagatgaggattaaattaccagacctaggagaaaatttaaattctaaaaccagctataaccagtcttcaattttaaaatttataggaaactgcatgaatctagttatgtcttttttttttgggagggtgttatatggaagatgcatatgcggagatcacggttgccacgactaccacgcacttcgatattgttgaaataacgtgaaatcgagcagaggaatgggtgcgccgtgcacgtactacatgggggaaacgcgagcgcatggcccattggccctgcgcaagaattggagagaagacagagggagagggagagagagagagaggaaaagaaaaaatgcagagcagcacgcggacagcaacggctgcctgcctacctccctgccacccctttttctcttatgtgcacgtccttcatgctcagcccaggacaggtatctcttcctctgtctctgtcttcttctagtgtgctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgcttctttgcactctgctggtgctttggagtttggtgaagggacctctgctgatcttctctggtttgcaaacagtacctattccctcctctcccatcctgcttcacttctctgctctgctttgtaaggccttgtttgcttaggccagggaaggcagggatcaaccccagccggaaagaatcctggtcctggcccatgcatgcaaaagtttgcgttcggttatctagtcgggattacagtgcaccaatgtggcattcagcctcaacaacaaaaaccgaatattcttagccaaggacgcaaaccgcgcagcctgctcaagaccgcggaccaatttaagccactggttcctcgtcagttttgcaggtggggcccacactcgagcaacacgtcgtcagggaagggagatggaggagagagacctcgtcgccgtcgtcgatcatccccgcgctccacgctgtcgttgaccatcaccatgctccatgccgttgagcttgtcggccaggggaggagagttgtcgggagctcgccggctcgatggggaagctcgctagtccacgctgccactgggagcccttactccgctcgacaccagaccgcgccggcgccggggagcccctactctgctcaacgctggaccgcgccaccctgacctcgtcgcggagagggcagggcagtggagaggcgaggaagacgaggacggatccgtcatcggtctgccgccgagccgccttaagtgccacctcgccccgtccaccccattctgagccgccgcgtccggaggaggaggagaggcatggcgtccggaggagggggggaggcacggcggaggagaagagaaggggagagggagccgacgaagaggcagaggagctcgagcacaaggtcgagccaacgctgattcggagccggcgctgttgccgcatggaccaccccaccggccgccgctccgccccggcgctcgctttctccggcctcgaatttgccggtggggtaagaaaaagaggagacagatgggaggggaagatgaaaaggtaaagaagaaagagagagagagagaggggaagatgaaaagtaaaaagagatggtattggtgggacgcactacaagaaacttgcactgtggaacatgtggcttaacacgttcctcgttcgtctaggtgggcatgtgaggaacaacaaatatgagggacacactgtgaacgccctaaccaggctaccctcacctggaaaaatatcatcttaccaacaggagtgcaaggggcatttaattatttgccacttttaaaatgtgacaattaagaatttaccaccgcaacagcagtggcgggcgtcggtgcatcaatatgtggcgtggcggccacgctgcagtgcacacgcctcccagactaCTGcttttgttctgtgcaccgtgctgaaaaatgtttctatctgatgaaatgagaatatgagataatgcatgccaatgagtttcagacatgacatgggtgcttcatggaacaatcagagattgtgggctgaatatcagtgcaaaattgtgctcaactactgactacaacctgaacattttgtgcagttaaacatgatggatccatgcccatatctatttcagaatgtttgttcagtgcctttatgtatacctaacactaccaagttgttttgtctaaatgtattttagggtttggattcattggcttctatctttggtactaggtgatggcctgaagagttgtgccattgtctcattatctgatcgtctaatgtcttgcgtggcattagtaggtttcagatttcaattatgagcatttgtatttgtaggtgttggatctagtgctcaggctatgtatctaccatctgtttgaaattatagaagtacagaaaaagcttcatgaaatcaatggaacctaataggtgaatattaattttccatattaagcaaattgtaacgaggcacaaactagactaaaaacaagtagaataaggaatatttcattacctgcctggcaagctctggaatcctagtatcagcattgatggtagcactcccaactttatcctcgaagagcttgaatgcatcttgttgatctaggcaccccattctgatggtaactccttggcgtgccatgctgacacatacggcctcgcttcgtgatgtcaatacaaccttacgttgattggggcaacgggatgccgacagcctccaaatcaatgtagttccacaggtcatccagcagcagcaagaatttcttgttgcgaagatggttgcacaggacggtagcacggttggtgacactgagcgaaggaggcaacaccaatgctgtcctgaagcttggcgatatcgcagcacttgccagcctcagcgagaacaatatggtccaaggtttgtactcgtggatcgcgcgcgagcttgagaagcgtggttttgccggcgccgcccatgccccatactcctagcacgccaggagctccgccgccgtcttcccggacaaaatctaggacgctggtcaggtgaggtttcattgcctggatcccaactccccatgtgccggccgctgccgtgtcgaggattgactgggcaagctggccgttgtcgaattctgccgccggtggaggtagtagaggaatcggaatcggaatcggatggggagcagcacccgcctccttcaagtggccctctcctttggcgatgagatccttgacttcttctagctccagatctgcatccctgccgatggcgcagaggtgccggaccacgttgatccggccacgctcttcacagattcatgtcggcgctttatctcctccaccttgtccttgcatccagccgcccgctgcagccaacccgagagcactgcggacgagggtttgggatccaaaatccccagctcgcccaactgatcttgcagcttggagaactcatcgacgagtttctgcacgcgcctttccgcatcgaacgggtacccgtagacctgggcgattggatcccacagcttggtgaccacaagcacgatcagcgaaacgatgatgccggggacgatggtccaagcggacaccat
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| CDS seq | atggtgtccgcttggaccatcgtccccggcatcatcgtttcgctgatcgtgcttgtggtcaccaagctgtgggatccaatcgcccaggtctacgggtacccgttcgatgcggaaaggcgcgtgcagaaactcgtcgatgagttctccaagctgcaagatcagttgggcgagctggggattttggatcccaaaccctcgtccgcagtgctctcgggttggctgcagcgggcggctggatgcaaggacaagcgtggccggatcaacgtggtccggcacctctgcgccatcggcagggatgcagatctggagctagaagaagtcaaggatctcatcgccaaaggagagggccacttgaaggaggcgggtgctgctccccatccgattccgattccgattcctctactacctccaccggcggcagaattcgacaacggccagcttgcccagtcaatcctcgacacggcagcggccggcacatggggagttgggatccaggcaatgaaacctcacctgaccagcgtcctagattttgtccgggaagacggcggcggagctcctggcgtgctaggagtatggggcatgggcggcgccggcaaaaccacgcttctcaagctcgcgcgcgatccacgagtacaaaccttggaccatattgttctcgctgaggctggcaagtgctgcgatatcgccaagcttcaggacagcattggtgttgcctccttcgctcagtgtcaccaaccgctgtcggcatcccgttgccccaatcaacgtaaggttgtattgacatcacgaagcgaggccgtatgtgtcagcatggcacgccaaggagttaccatcagaatggggtgcctagatcaacaagatgcattcaagctcttcgaggataaagttgggagtgctaccatcaatgctgatactaggattccagagcttgccaggcaggtagccgaaatgtgcggtggtctgccattagtgctgtgcgtcatcggtcgatccatgtgcacgaagaagaattataaactgtgggtggatgcagtcaacaggttggagaagtcaaaggtccataataacctagttggagacgatgatatattcaacatcctaagaagcgactcatccgccaacggttttgaaggaggagagtctgtcatcgattccctgcagggagcatcgctcctggagagcgctggaagctattctgttgatatgcacgacatcatccgcgacatggcgctgtgggttgtaagggGccctggaggtgagaagtggagcgtgctgaatcgagcatgggtgcaggatgcaaccatacgcaaaatgaacaacgggtattggactcgggaagaatggcctcccaaggatacatggcctgagcttgagatgcttgcgatggaaagcaatcgctcctaccttgatccgtggaaggtttcgtccatcggccagatgacaaacatcagctttctggaactggtgtctttagatacatttccaatggagatctgtgagctgcataagctcgaatacctctgcatcaaaggagggagtatgtctaggctgccaattgaactcgggaaactgtcgaaactcaagcaattgcatctgcggcagtcttgcagtcttggcgagataccgacaggattgatctcgcagctcgtaaacctgcaggtgctggaccttttctgcagcagcatcgattatccctaccgtccaaaatctgctgctggtggcctttacaattttctgggtgaactggccgaagctagagcatcggagaagttgaagattcttgggatttgcctggatgcgacgcgtgacaatagggcatttctgaagcagttgatgcagaagcaagtgcgaataaggtcgctctgcttaagcttcatcaatccaatctcgcctggacatgatcaaccccagccggccaccagcagatacatgatcgccgaactgcaaccgttctccaatgatctgggagaactagccatttctagttccgacatcttgcaggagcttgtggccacgtctgatggaaaggagctgatccaaaacctggaacatctctgcttggaaaatctcaatgtgctggagagagtaatatggctgaacgcggcgagaaaccttcgaagggttgacatcaagaaatgtgcaaaattgacgcacgccacatgggtattgcagcttgggtacctcgaggaactcggcattcatgattgcccacagtttaaacggttgatcgaccataaggagcttgcggagaatccaccagatcatgtgatcttccctcggcttacatatctcgatctcagtgatctgccagaattgtctgatatatgtgtgctgccttgtgaatttaagtcgtcgctggcgcttcttgttgagaaccgcgacaagctgatgaacatatcgttccactacccacccggtcatgaccagaaaaatattagggttttctgcgacaatgaatggttcaatagactcgagtgcaagccaaatatcatgaagtcctacctatcgcaaaacatgagattttctgctatttga
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| Protein seq | MVSAWTIVPGIIVSLIVLVVTKLWDPIAQVYGYPFDAERRVQKLVDEFSKLQDQLGELGILDPKPSSAVLSGWLQRAAGCKDKRGRINVVRHLCAIGRDADLELEEVKDLIAKGEGHLKEAGAAPHPIPIPIPLLPPPAAEFDNGQLAQSILDTAAAGTWGVGIQAMKPHLTSVLDFVREDGGGAPGVLGVWGMGGAGKTTLLKLARDPRVQTLDHIVLAEAGKCCDIAKLQDSIGVASFAQCHQPLSASRCPNQRKVVLTSRSEAVCVSMARQGVTIRMGCLDQQDAFKLFEDKVGSATINADTRIPELARQVAEMCGGLPLVLCVIGRSMCTKKNYKLWVDAVNRLEKSKVHNNLVGDDDIFNILRSDSSANGFEGGESVIDSLQGASLLESAGSYSVDMHDIIRDMALWVVRGPGGEKWSVLNRAWVQDATIRKMNNGYWTREEWPPKDTWPELEMLAMESNRSYLDPWKVSSIGQMTNISFLELVSLDTFPMEICELHKLEYLCIKGGSMSRLPIELGKLSKLKQLHLRQSCSLGEIPTGLISQLVNLQVLDLFCSSIDYPYRPKSAAGGLYNFLGELAEARASEKLKILGICLDATRDNRAFLKQLMQKQVRIRSLCLSFINPISPGHDQPQPATSRYMIAELQPFSNDLGELAISSSDILQELVATSDGKELIQNLEHLCLENLNVLERVIWLNAARNLRRVDIKKCAKLTHATWVLQLGYLEELGIHDCPQFKRLIDHKELAENPPDHVIFPRLTYLDLSDLPELSDICVLPCEFKSSLALLVENRDKLMNISFHYPPGHDQKNIRVFCDNEWFNRLECKPNIMKSYLSQNMRFSAI |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006390 | OsLima_12g0006390.01 | Chr12 | 5266194 | 5271646 | - | NAM | ||
| CDS seq | atggtgtccgcttggaccatcgtccccggcatcatcgtttcgctgatcgtgcttgtggtcaccaagctgtgggatccaatcgcccaggtctacgggtacccgttcgatgcggaaaggcgcgtgcagaaactcgtcgatgagttctccaagctgcaagatcagttgggcgagctggggattttggatcccaaaccctcgtccgcagtgctctcgggttggctgcagcgggcggctggatgcaaggacaagcgtggccggatcaacgtggtccggcacctctgcgccatcggcagggatgcagatctggagctagaagaagtcaaggatctcatcgccaaaggagagggccacttgaaggaggcgggtgctgctccccatccgattccgattccgattcctctactacctccaccggcggcagaattcgacaacggccagcttgcccagtcaatcctcgacacggcagcggccggcacatggggagttgggatccaggcaatgaaacctcacctgaccagcgtcctagattttgtccgggaagacggcggcggagctcctggcgtgctaggagtatggggcatgggcggcgccggcaaaaccacgcttctcaagctcgcgcgcgatccacgagtacaaaccttggaccatattgttctcgctgaggctggcaagtgctgcgatatcgccaagcttcaggacagcattggtgttgcctccttcgctcagtgtcaccaaccgctgtcggcatcccgttgccccaatcaacgtaaggttgtattgacatcacgaagcgaggccgtatgtgtcagcatggcacgccaaggagttaccatcagaatggggtgcctagatcaacaagatgcattcaagctcttcgaggataaagttgggagtgctaccatcaatgctgatactaggattccagagcttgccaggcaggtagccgaaatgtgcggtggtctgccattagtgctgtgcgtcatcggtcgatccatgtgcacgaagaagaattataaactgtgggtggatgcagtcaacaggttggagaagtcaaaggtccataataacctagttggagacgatgatatattcaacatcctaagaagcgactcatccgccaacggttttgaaggaggagagtctgtcatcgattccctgcagggagcatcgctcctggagagcgctggaagctattctgttgatatgcacgacatcatccgcgacatggcgctgtgggttgtaagggGccctggaggtgagaagtggagcgtgctgaatcgagcatgggtgcaggatgcaaccatacgcaaaatgaacaacgggtattggactcgggaagaatggcctcccaaggatacatggcctgagcttgagatgcttgcgatggaaagcaatcgctcctaccttgatccgtggaaggtttcgtccatcggccagatgacaaacatcagctttctggaactggtgtctttagatacatttccaatggagatctgtgagctgcataagctcgaatacctctgcatcaaaggagggagtatgtctaggctgccaattgaactcgggaaactgtcgaaactcaagcaattgcatctgcggcagtcttgcagtcttggcgagataccgacaggattgatctcgcagctcgtaaacctgcaggtgctggaccttttctgcagcagcatcgattatccctaccgtccaaaatctgctgctggtggcctttacaattttctgggtgaactggccgaagctagagcatcggagaagttgaagattcttgggatttgcctggatgcgacgcgtgacaatagggcatttctgaagcagttgatgcagaagcaagtgcgaataaggtcgctctgcttaagcttcatcaatccaatctcgcctggacatgatcaaccccagccggccaccagcagatacatgatcgccgaactgcaaccgttctccaatgatctgggagaactagccatttctagttccgacatcttgcaggagcttgtggccacgtctgatggaaaggagctgatccaaaacctggaacatctctgcttggaaaatctcaatgtgctggagagagtaatatggctgaacgcggcgagaaaccttcgaagggttgacatcaagaaatgtgcaaaattgacgcacgccacatgggtattgcagcttgggtacctcgaggaactcggcattcatgattgcccacagtttaaacggttgatcgaccataaggagcttgcggagaatccaccagatcatgtgatcttccctcggcttacatatctcgatctcagtgatctgccagaattgtctgatatatgtgtgctgccttgtgaatttaagtcgtcgctggcgcttcttgttgagaaccgcgacaagctgatgaacatatcgttccactacccacccggtcatgaccagaaaaatattagggttttctgcgacaatgaatggttcaatagactcgagtgcaagccaaatatcatgaagtcctacctatcgcaaaacatgagattttctgctatttga
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| Protein seq | MVSAWTIVPGIIVSLIVLVVTKLWDPIAQVYGYPFDAERRVQKLVDEFSKLQDQLGELGILDPKPSSAVLSGWLQRAAGCKDKRGRINVVRHLCAIGRDADLELEEVKDLIAKGEGHLKEAGAAPHPIPIPIPLLPPPAAEFDNGQLAQSILDTAAAGTWGVGIQAMKPHLTSVLDFVREDGGGAPGVLGVWGMGGAGKTTLLKLARDPRVQTLDHIVLAEAGKCCDIAKLQDSIGVASFAQCHQPLSASRCPNQRKVVLTSRSEAVCVSMARQGVTIRMGCLDQQDAFKLFEDKVGSATINADTRIPELARQVAEMCGGLPLVLCVIGRSMCTKKNYKLWVDAVNRLEKSKVHNNLVGDDDIFNILRSDSSANGFEGGESVIDSLQGASLLESAGSYSVDMHDIIRDMALWVVRGPGGEKWSVLNRAWVQDATIRKMNNGYWTREEWPPKDTWPELEMLAMESNRSYLDPWKVSSIGQMTNISFLELVSLDTFPMEICELHKLEYLCIKGGSMSRLPIELGKLSKLKQLHLRQSCSLGEIPTGLISQLVNLQVLDLFCSSIDYPYRPKSAAGGLYNFLGELAEARASEKLKILGICLDATRDNRAFLKQLMQKQVRIRSLCLSFINPISPGHDQPQPATSRYMIAELQPFSNDLGELAISSSDILQELVATSDGKELIQNLEHLCLENLNVLERVIWLNAARNLRRVDIKKCAKLTHATWVLQLGYLEELGIHDCPQFKRLIDHKELAENPPDHVIFPRLTYLDLSDLPELSDICVLPCEFKSSLALLVENRDKLMNISFHYPPGHDQKNIRVFCDNEWFNRLECKPNIMKSYLSQNMRFSAI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.034580 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0205500 | RBH | 0.733539 | 0.490773 | 0.492659 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10410 | RBH | 0.458461 | 0.305069 | 0.117208 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0205500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006550 | RBH | 0.370401 | 5.524549 | 2.225667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006630 | RBH | 0.168622 | 0.697298 | 1.308495 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006630 | RBH | 0.000000 | 0.740196 | 4.410956 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006530 | RBH | 0.023947 | 0.079175 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006520 | RBH | 0.000000 | 0.859981 | 2.011647 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0082800 | RBH | 0.3298145 | 0.585679 | 0.6112355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006480 | RBH | 0.036622 | 0.059254 | 0.536470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0088400 | RBH | 0.5735695 | 0.334975 | 2.7862805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006650 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006500 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006510 | RBH | 0.116467 | 0.0 | 0.239476 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006390 | RBH | 0.0 | 0.0 | 1.264738 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006530 | RBH | 0.000000 | 5.052510 | 1.899143 |
