Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006370 | OGI:12014480 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5256218-5258101 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaagctctgagatcttgacataacgaaggtgcttcagaccagacagtccgtcagggaaatgccacctcttgaacagagaacattccaacaaacgcagggattttgagttcttcacaaccttcgccattgcagataccatttccttctggacatggccacaatcttcaacgatgatcgtgcgcagcttcttcaaacggagcaactccttcacatcaccaacggtgaaattgttaatacctgcaatattaatgtgccgaactgaactattcacgtgtctaaagtctgcagaatcaactagcctcgcacattcaccacgtgagacacattttgccagatcatacatcatgtcattcataacatagtatgcaggttcatcgtcttctccgccaaagcgatcaaagaacgattttgcagtcaaccgagccaagtataactctcccaagttctctttcttttccccacgaaattgagcagagatcaatcctgacgaaatccatgtctgcaccaactcctcttttctgaacggatggtttttccgaaatatgctgcaataccgaaagcaaacttgcagctctggcaggaggctgtagtagcttattttcaaaaccgctatatcacgagttgttgttgctcgaaaattatctatatcttgaagaaatttacaccagtactctggagtcaaattgtacctcaaatgcaaagcagcaacctttgttcccaagggagaccaactaagatcctttgcgattcgagCcccaattgattgtagttctgcataatctggtgctcccacttccagaccaccaaatgcaaaatggttaaaaagtagtaaaatttcattttgttcaattacaaacaacgacataaggtgctcttcacatcctgtgataagcccaggtagagttgccactgaattcaatctagttgtcaataaaattttacttccggttttggaggcactgaaaacagaaaatagtttctcccattgcgatatatcttgatcttcccagacattgtctaaaacgagcaaagcttttgtggacattaacttatcacggagaatatgttccattccctccaaatgagcataattacatggtgaaaatgtaacctgctctactatttcacctataactctttctacatcaaaaattgtagatacacgcacccatgcaatcttatcgaaatgatttctgaccctagcatcagtacatacgtggtgtgccaatgtagtcttccccataccaccaggaccgactatggatataacggggacatgcataggactggtactactaacctgagtttcagcattgccatccaagggcttgatcaaccattggactatcatatccatctcctcgtgtcgaccaaacattttattgagcattactggagagaagcttgtctcgcaatcttggcgcagaacatgtgtataattggtttgttccaataggcgtgcagtagatcttcctaaatccttgatagctttcctcagcttttctagactgctgccagagtgcgtcaagaagctggtaactacttgcttcatcttggaaaaacaagagcccagctcactaacctcttgctgatcattggccttctccctgagcttgtagtactcatgctcgtcgattgcatcctcgagtttctcgattgcatccctcaggcgccacatatccaaatacccaaagctttccacttgattcgctgtgagggcatcgaacattggttggatcatcaaccaatcctcatgtaacttgttcatcaagggcttcaatttgtcagacttgcggtccttgtccaggtaggctgaggccttgttgatcaggttgacgatgaacattgctgacaccgacctccctgccaatgtgcattccat
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| CDS seq | atggaatgcacattggcagggaggtcggtgtcagcaatgttcatcgtcaacctgatcaacaaggcctcagcctacctggacaaggaccgcaagtctgacaaattgaagcccttgatgaacaagttacatgaggattggttgatgatccaaccaatgttcgatgccctcacagcgaatcaagtggaaagctttgggtatttggatatgtggcgcctgagggatgcaatcgagaaactcgaggatgcaatcgacgagcatgagtactacaagctcagggagaaggccaatgatcagcaagaggttagtgagctgggctcttgtttttccaagatgaagcaagtagttaccagcttcttgacgcactctggcagcagtctagaaaagctgaggaaagctatcaaggatttaggaagatctactgcacgcctattggaacaaaccaattatacacatgttctgcgccaagattgcgagacaagcttctctccagtaatgctcaataaaatgtttggtcgacacgaggagatggatatgatagtccaatggttgatcaagcccttggatggcaatgctgaaactcaggttagtagtaccagtcctatgcatgtccccgttatatccatagtcggtcctggtggtatggggaagactacattggcacaccacgtatgtactgatgctagggtcagaaatcatttcgataagattgcatgggtgcgtgtatctacaatttttgatgtagaaagagttataggtgaaatagtagagcaggttacattttcaccatgtaattatgctcatttggagggaatggaacatattctccgtgataagttaatgtccacaaaagctttgctcgttttagacaatgtctgggaagatcaagatatatcgcaatgggagaaactattttctgttttcagtgcctccaaaaccggaagtaaaattttattgacaactagattgaattcagtggcaactctacctgggcttatcacaggatgtgaagagcaccttatgtcgttgtttgtaattgaacaaaatgaaattttactactttttaaccattttgcatttggtggtctggaagtgggagcaccagattatgcagaactacaatcaattgggGctcgaatcgcaaaggatcttagttggtctcccttgggaacaaaggttgctgctttgcatttgaggtacaatttgactccagagtactggtgtaaatttcttcaagatatagataattttcgagcaacaacaactcgtgatatagcggttttgaaaataagctactacagcctcctgccagagctgcaagtttgctttcggtattgcagcatatttcggaaaaaccatccgttcagaaaagaggagttggtgcagacatggatttcgtcaggattgatctctgctcaatttcgtggggaaaagaaagagaacttgggagagttatacttggctcggttgactgcaaaatcgttctttgatcgctttggcggagaagacgatgaacctgcatactatgttatgaatgacatgatgtatgatctggcaaaatgtgtctcacgtggtgaatgtgcgaggctagttgattctgcagactttagacacgtgaatagttcagttcggcacattaatattgcaggtattaacaatttcaccgttggtgatgtgaaggagttgctccgtttgaagaagctgcgcacgatcatcgttgaagattgtggccatgtccagaaggaaatggtatctgcaatggcgaaggttgtgaagaactcaaaatccctgcgtttgttggaatgttctctgttcaagaggtggcatttccctgacggactgtctggtctgaagcaccttcgttatgtcaagatctcagagctttag
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| Protein seq | MECTLAGRSVSAMFIVNLINKASAYLDKDRKSDKLKPLMNKLHEDWLMIQPMFDALTANQVESFGYLDMWRLRDAIEKLEDAIDEHEYYKLREKANDQQEVSELGSCFSKMKQVVTSFLTHSGSSLEKLRKAIKDLGRSTARLLEQTNYTHVLRQDCETSFSPVMLNKMFGRHEEMDMIVQWLIKPLDGNAETQVSSTSPMHVPVISIVGPGGMGKTTLAHHVCTDARVRNHFDKIAWVRVSTIFDVERVIGEIVEQVTFSPCNYAHLEGMEHILRDKLMSTKALLVLDNVWEDQDISQWEKLFSVFSASKTGSKILLTTRLNSVATLPGLITGCEEHLMSLFVIEQNEILLLFNHFAFGGLEVGAPDYAELQSIGARIAKDLSWSPLGTKVAALHLRYNLTPEYWCKFLQDIDNFRATTTRDIAVLKISYYSLLPELQVCFRYCSIFRKNHPFRKEELVQTWISSGLISAQFRGEKKENLGELYLARLTAKSFFDRFGGEDDEPAYYVMNDMMYDLAKCVSRGECARLVDSADFRHVNSSVRHINIAGINNFTVGDVKELLRLKKLRTIIVEDCGHVQKEMVSAMAKVVKNSKSLRLLECSLFKRWHFPDGLSGLKHLRYVKISEL |
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| Function | Putative disease resistance protein At3g14460 [UniProtKB/Swiss-Prot:Q9LRR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006370 | OsLima_12g0006370.01 | Chr12 | 5256218 | 5258101 | - | NAM | ||
| CDS seq | atggaatgcacattggcagggaggtcggtgtcagcaatgttcatcgtcaacctgatcaacaaggcctcagcctacctggacaaggaccgcaagtctgacaaattgaagcccttgatgaacaagttacatgaggattggttgatgatccaaccaatgttcgatgccctcacagcgaatcaagtggaaagctttgggtatttggatatgtggcgcctgagggatgcaatcgagaaactcgaggatgcaatcgacgagcatgagtactacaagctcagggagaaggccaatgatcagcaagaggttagtgagctgggctcttgtttttccaagatgaagcaagtagttaccagcttcttgacgcactctggcagcagtctagaaaagctgaggaaagctatcaaggatttaggaagatctactgcacgcctattggaacaaaccaattatacacatgttctgcgccaagattgcgagacaagcttctctccagtaatgctcaataaaatgtttggtcgacacgaggagatggatatgatagtccaatggttgatcaagcccttggatggcaatgctgaaactcaggttagtagtaccagtcctatgcatgtccccgttatatccatagtcggtcctggtggtatggggaagactacattggcacaccacgtatgtactgatgctagggtcagaaatcatttcgataagattgcatgggtgcgtgtatctacaatttttgatgtagaaagagttataggtgaaatagtagagcaggttacattttcaccatgtaattatgctcatttggagggaatggaacatattctccgtgataagttaatgtccacaaaagctttgctcgttttagacaatgtctgggaagatcaagatatatcgcaatgggagaaactattttctgttttcagtgcctccaaaaccggaagtaaaattttattgacaactagattgaattcagtggcaactctacctgggcttatcacaggatgtgaagagcaccttatgtcgttgtttgtaattgaacaaaatgaaattttactactttttaaccattttgcatttggtggtctggaagtgggagcaccagattatgcagaactacaatcaattgggGctcgaatcgcaaaggatcttagttggtctcccttgggaacaaaggttgctgctttgcatttgaggtacaatttgactccagagtactggtgtaaatttcttcaagatatagataattttcgagcaacaacaactcgtgatatagcggttttgaaaataagctactacagcctcctgccagagctgcaagtttgctttcggtattgcagcatatttcggaaaaaccatccgttcagaaaagaggagttggtgcagacatggatttcgtcaggattgatctctgctcaatttcgtggggaaaagaaagagaacttgggagagttatacttggctcggttgactgcaaaatcgttctttgatcgctttggcggagaagacgatgaacctgcatactatgttatgaatgacatgatgtatgatctggcaaaatgtgtctcacgtggtgaatgtgcgaggctagttgattctgcagactttagacacgtgaatagttcagttcggcacattaatattgcaggtattaacaatttcaccgttggtgatgtgaaggagttgctccgtttgaagaagctgcgcacgatcatcgttgaagattgtggccatgtccagaaggaaatggtatctgcaatggcgaaggttgtgaagaactcaaaatccctgcgtttgttggaatgttctctgttcaagaggtggcatttccctgacggactgtctggtctgaagcaccttcgttatgtcaagatctcagagctttag
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| Protein seq | MECTLAGRSVSAMFIVNLINKASAYLDKDRKSDKLKPLMNKLHEDWLMIQPMFDALTANQVESFGYLDMWRLRDAIEKLEDAIDEHEYYKLREKANDQQEVSELGSCFSKMKQVVTSFLTHSGSSLEKLRKAIKDLGRSTARLLEQTNYTHVLRQDCETSFSPVMLNKMFGRHEEMDMIVQWLIKPLDGNAETQVSSTSPMHVPVISIVGPGGMGKTTLAHHVCTDARVRNHFDKIAWVRVSTIFDVERVIGEIVEQVTFSPCNYAHLEGMEHILRDKLMSTKALLVLDNVWEDQDISQWEKLFSVFSASKTGSKILLTTRLNSVATLPGLITGCEEHLMSLFVIEQNEILLLFNHFAFGGLEVGAPDYAELQSIGARIAKDLSWSPLGTKVAALHLRYNLTPEYWCKFLQDIDNFRATTTRDIAVLKISYYSLLPELQVCFRYCSIFRKNHPFRKEELVQTWISSGLISAQFRGEKKENLGELYLARLTAKSFFDRFGGEDDEPAYYVMNDMMYDLAKCVSRGECARLVDSADFRHVNSSVRHINIAGINNFTVGDVKELLRLKKLRTIIVEDCGHVQKEMVSAMAKVVKNSKSLRLLECSLFKRWHFPDGLSGLKHLRYVKISEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0204600 | SBH | 0.0 | 0.0 | 1.282113 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10390 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0204600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006530 | RBH | 0.0 | 1.392850 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006610 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0082600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006460 | RBH | 0.0 | 0.0 | 0.049821 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0088200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008840 | SBH | 0.021630 | 0.126688 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006620 | RBH | 0.096495 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006430 | SBH | 0.0 | 0.725622 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006370 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006510 | RBH | 0.0 | 4.196439 | 0.0 |
