Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0005970 | OGI:12012440 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:4758695-4760527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagacaaataatttgttcttcaagataatcaagcatacagtcaaacacttgcttagtagtcacacaacataacattcataacccccccccccccccccagacatagacatagtttctcaaactaataatcaagcgatacagtcatacacttgatagtcacacaacatcaaacatttatgttgtgctaaatacaaaCcccatacacttggtagagtcacgcaacatcaacattcatgctgggctaaatacaaaccccagacatcagtaacgtcagatgaccacacaatgaagtctccaccaaactctctcttctgataatgagaatgagctttgatcccgtgagaatttctaaccttgtaaaatgtttctgttttgttgccattagaccctactccacatccgatcaaagcaactgcatgagcatcactagtgttctcacatgttggggcacaataatactgaccatcacttaagtaattaaataggaaaccgtgacgaatCcctgctactaatgggaagcctcctgccaacaatctagttatataaagaacatccttagggtcaacacgaaaataactttgaatcttaaggcgtgggactggagttgttgtaacatcagaagctccaatcaatatagcaatcccatcacTttttagaacttccatgacaattggacaattatcataagtctcatataacttatcttgaggttcatttcctagtttaaaaccagtccttttgttatatgtctcaaccatctcatttatatcaaatggagcagaaaacacaaatcccttttgtgctccttccagtctacgggtacaatcaattaccgcagtaattgcatatagagtacaatgtgctgaaatgaaaatacagggaaaaTtttaaaaggtattcgtgttaaagagacaggaaatgtagtaggataagtgtatccaaaagaaaagtaaaaataaatgaaataatgataataaaaattagatgaaacaaataaaaatggtttcagatgataaaaggagcaccaaaaactgtgttgaattctaagttctctaacacaaataagaaatAaaatcacatctacaatcaatgtacaatgtgtaatttgtgaaattcagtccaaagtgcaaatgatggtaactatatatggtgttacgggaaaagataagAaaccttggtcaatgaaagtttaccaaaataaaatttactcaaaataaataatagggatcggaatagtatacttacgttcaagtttttgatcataggtcttaaaatccaaagaaataccattgagtgtacattgagttatcttccactcgtaagctgcatcgttctgagagagagagagagagaggaaaatggtagtaaagaatggccatgtacagatatcttatatttaaaacttctttacgaagtaaaaaagcattaaagatgtgaaaaagatgaatggggctagtttagaagagagaGaagtaaaaaaacattaaagatgtgaaagagatgaatggagctagtttaaaaaagagagagGAaaatgcaagtaaaaaatggccatgtacaaatatcttgtatttaaaacttcttcacgaagtaaaaaagcattaaagatgtgaaaaagatgaaatggagctagtttaccttcaaaccacagtcaacacacccgaatggaggcaagtctacaagcatattcttgataggctcgtactccttcctacacccggggcaaatccaattcctgacgtaatccatggccttcctcttatcacggtacagggcagcccgctcatctagctcagaaatctccggagcaggcccgatgacccaactacccat
More
|
||||||||||
| CDS seq | atgggtagttgggtcatcgggcctgctccggagatttctgagctagatgagcgggctgccctgtaccgtgataagaggaaggccatggattacgtcaggaattggatttgccccgggtgtaggaaggagtacgagcctatcaagaatatgcttgtagacttgcctccattcgggtgtgttgactgtggtttgaagaacgatgcagcttacgagtggaagataactcaatgtacactcaatgcacattgtactctatatgcaattactgcggtaattgattgtacccgtagactggaaggagcacaaaagggatttgtgttttctgctccatttgatataaatgagatggttgagacatataacaaaaggactggttttaaactaggaaatgaacctcaagataagttatatgagacttatgataattgtccaattgtcatggaagttctaaaaAgtgatgggattgctatattgattggagcttctgatgttacaacaactccagtcccacgccttaagattcaaagttattttcgtgttgaccctaaggatgttctttatataactagattgttggcaggaggcttcccattagtagcaggGattcgtcacggtttcctatttaattacttaagtgatggtcagtattattgtgccccaacatgtgagaacactagtgatgctcatgcagttgctttgatcggatgtggagtagggtctaatggcaacaaaacagaaacattttacaaggttagaaattctcacgggatcaaagctcattctcattatcagaagagagagtttggtggagacttcattgtgtggtcatctgacgttactgatgtctggggtttgtatttagcccagcatgaatgttga
More
|
||||||||||
| Protein seq | MGSWVIGPAPEISELDERAALYRDKRKAMDYVRNWICPGCRKEYEPIKNMLVDLPPFGCVDCGLKNDAAYEWKITQCTLNAHCTLYAITAVIDCTRRLEGAQKGFVFSAPFDINEMVETYNKRTGFKLGNEPQDKLYETYDNCPIVMEVLKSDGIAILIGASDVTTTPVPRLKIQSYFRVDPKDVLYITRLLAGGFPLVAGIRHGFLFNYLSDGQYYCAPTCENTSDAHAVALIGCGVGSNGNKTETFYKVRNSHGIKAHSHYQKREFGGDFIVWSSDVTDVWGLYLAQHEC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0005970 | OsLima_12g0005970.01 | Chr12 | 4758695 | 4760527 | - | NAM | ||
| CDS seq | atgggtagttgggtcatcgggcctgctccggagatttctgagctagatgagcgggctgccctgtaccgtgataagaggaaggccatggattacgtcaggaattggatttgccccgggtgtaggaaggagtacgagcctatcaagaatatgcttgtagacttgcctccattcgggtgtgttgactgtggtttgaagaacgatgcagcttacgagtggaagataactcaatgtacactcaatgcacattgtactctatatgcaattactgcggtaattgattgtacccgtagactggaaggagcacaaaagggatttgtgttttctgctccatttgatataaatgagatggttgagacatataacaaaaggactggttttaaactaggaaatgaacctcaagataagttatatgagacttatgataattgtccaattgtcatggaagttctaaaaAgtgatgggattgctatattgattggagcttctgatgttacaacaactccagtcccacgccttaagattcaaagttattttcgtgttgaccctaaggatgttctttatataactagattgttggcaggaggcttcccattagtagcaggGattcgtcacggtttcctatttaattacttaagtgatggtcagtattattgtgccccaacatgtgagaacactagtgatgctcatgcagttgctttgatcggatgtggagtagggtctaatggcaacaaaacagaaacattttacaaggttagaaattctcacgggatcaaagctcattctcattatcagaagagagagtttggtggagacttcattgtgtggtcatctgacgttactgatgtctggggtttgtatttagcccagcatgaatgttga
More
|
|||||||
| Protein seq | MGSWVIGPAPEISELDERAALYRDKRKAMDYVRNWICPGCRKEYEPIKNMLVDLPPFGCVDCGLKNDAAYEWKITQCTLNAHCTLYAITAVIDCTRRLEGAQKGFVFSAPFDINEMVETYNKRTGFKLGNEPQDKLYETYDNCPIVMEVLKSDGIAILIGASDVTTTPVPRLKIQSYFRVDPKDVLYITRLLAGGFPLVAGIRHGFLFNYLSDGQYYCAPTCENTSDAHAVALIGCGVGSNGNKTETFYKVRNSHGIKAHSHYQKREFGGDFIVWSSDVTDVWGLYLAQHEC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0194100 | RBH | 0.251565 | 1.031944 | 1.569713 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g09220 | RBH | 0.170121 | 0.694068 | 0.404075 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0194100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006010 | RBH | 0.189735 | 1.019745 | 1.119114 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006090 | RBH | 0.0 | 0.000000 | 0.868637 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006120 | RBH | 2.809942 | 30.286152 | 17.647074 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006010 | RBH | 0.030067 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006100 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006070 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006090 | RBH | 0.0 | 0.0 | 0.193066 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006030 | RBH | 0.000000 | 0.906757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005870 | RBH | 0.277669 | 0.000000 | 0.367713 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006100 | RBH | 0.0 | 0.0 | 0.0 |
