Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0005220 | OGI:12010780 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:3962674-3964718 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccccccaccctcgagcacgggtattgcggccggtcctcactcgtcgccgcggacgccacccacctcctccttcttgtcgtcgtccccgtcaagattcaaggcatgtacgaccacgagtacccggaggagtacttcgtctacacggccgacgccctcaggccttcgctggccgacgccctctgtcctacgctgacgcgcctccccagattccccgacaaccgccagcgcttggccggcgacattggcatcttgaaccacgccgccgccgcgggtgatggtttcagcttcgccgttgcatctttgcagacgttcatggagtggcaatctggtgaaggatccgcggccatcctgcacctccaggagatggccaagctctccgtgctccaatgttcagttggcagtgatctagatgaggacaacaccaagaacaacgacagcagatgggttgtcaagaacctggccatgccttttgactcgcaaggggattttgggccgcgccaatggaagagcaacatcgccttcgcctatgccggcaaattgtattgggctgactacgacgttggccttatctactgtgatgtcctggaatcttcacccaagctccagttgatcaagttccctgtcccggtgagaaaatgtgagcttggtgtcagtggtccagatgacaactgcgggaactctgagtccttcaggacagccggtgtttctaatgggaagatcaagttcgtcgatgttgacaattgccgctcccaatccttcgccgtcatcatcaggacgtggacactgcaaatgccacagatggtatggaagttggatgatgtactcgatgtcaaacaactgtgggggtcagcatccttcaagaaatacgatttgcatcagtgggtgccagagtatcctgtggtgagcttgctagacccacacattgtgcactttgtgctgcacaaacatatgtaccatgatcaggtctggatgatcgcagttgacatgagggccaagtcagttaaatcatgcaagaactatccaaagggtgagaaggaggatggatacaaggggctgtcgttcaacattgatttcatatgcagcatgctctcgaagtaattacaatcaggtaatgaatgacttgttgtttgccctgtcactcctgtatgtacttttgtatgcctgatcttattacataatttagggctttggtcactgctagttacatcctatcccattgtcgctctcaacaattccgccatgattatagctactgtgcccttgaaTttttaggaactcaactatgggaacataagttagccatggcaacatgtatgccacatgtattggaagacatcaacatacaagtgtcgattgatcaaagtctttttaagcatcattttaaaataagacagcacatatagtcatatactgaaattttggtgctagctttagttcagcttgagaatcaaactggttcagagcttaatcttaacctattaaaattttcttgactgattaatggcttgcttggatagttggatgtggatatatgtattctgctatactttcagcattagtagttcacctggacaacttgtaaagaatccttctcaatatttgaacttgttttcatattagctaaattttagaaatctgcagttactttgttacagaagtttctacagttattggagatgttatttgttgcaacaagtacttggttacatacttacatgtagatggtaaaaatgatacacggcctgatgttttgttattgtctgcaatttgaatctcaggtcgtgatgataggaaatatgttgaatgaagcaggagcatccaccgatgttacgcctgaccgatcgtccgtccattatcaacacaagattggcatcggtttatgatgttgtggactttggcggggtgtttttggtatagacataaggttttgcatatctttgtgttaaaatggagggtcgttggttttttgtttgtttggagatgtcttaggtttactgctgattgtgccttctgcttcgataatcatcacaaagctaaacatg
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| CDS seq | atgccccccaccctcgagcacgggtattgcggccggtcctcactcgtcgccgcggacgccacccacctcctccttcttgtcgtcgtccccgtcaagattcaaggcatgtacgaccacgagtacccggaggagtacttcgtctacacggccgacgccctcaggccttcgctggccgacgccctctgtcctacgctgacgcgcctccccagattccccgacaaccgccagcgcttggccggcgacattggcatcttgaaccacgccgccgccgcgggtgatggtttcagcttcgccgttgcatctttgcagacgttcatggagtggcaatctggtgaaggatccgcggccatcctgcacctccaggagatggccaagctctccgtgctccaatgttcagttggcagtgatctagatgaggacaacaccaagaacaacgacagcagatgggttgtcaagaacctggccatgccttttgactcgcaaggggattttgggccgcgccaatggaagagcaacatcgccttcgcctatgccggcaaattgtattgggctgactacgacgttggccttatctactgtgatgtcctggaatcttcacccaagctccagttgatcaagttccctgtcccggtgagaaaatgtgagcttggtgtcagtggtccagatgacaactgcgggaactctgagtccttcaggacagccggtgtttctaatgggaagatcaagttcgtcgatgttgacaattgccgctcccaatccttcgccgtcatcatcaggacgtggacactgcaaatgccacagatggtatggaagttggatgatgtactcgatgtcaaacaactgtgggggtcagcatccttcaagaaatacgatttgcatcagtgggtgccagagtatcctgtggtgagcttgctagacccacacattgtgcactttgtgctgcacaaacatatgtaccatgatcaggtctggatgatcgcagttgacatgagggccaagtcagttaaatcatgcaagaactatccaaagggtgagaaggaggatggatacaaggggctgtcgttcaacattgatttcatatgcagcatgctctcgaagtaa
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| Protein seq | MPPTLEHGYCGRSSLVAADATHLLLLVVVPVKIQGMYDHEYPEEYFVYTADALRPSLADALCPTLTRLPRFPDNRQRLAGDIGILNHAAAAGDGFSFAVASLQTFMEWQSGEGSAAILHLQEMAKLSVLQCSVGSDLDEDNTKNNDSRWVVKNLAMPFDSQGDFGPRQWKSNIAFAYAGKLYWADYDVGLIYCDVLESSPKLQLIKFPVPVRKCELGVSGPDDNCGNSESFRTAGVSNGKIKFVDVDNCRSQSFAVIIRTWTLQMPQMVWKLDDVLDVKQLWGSASFKKYDLHQWVPEYPVVSLLDPHIVHFVLHKHMYHDQVWMIAVDMRAKSVKSCKNYPKGEKEDGYKGLSFNIDFICSMLSK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0005220 | OsLima_12g0005220.01 | Chr12 | 3962674 | 3964718 | + | NAM | ||
| CDS seq | atgccccccaccctcgagcacgggtattgcggccggtcctcactcgtcgccgcggacgccacccacctcctccttcttgtcgtcgtccccgtcaagattcaaggcatgtacgaccacgagtacccggaggagtacttcgtctacacggccgacgccctcaggccttcgctggccgacgccctctgtcctacgctgacgcgcctccccagattccccgacaaccgccagcgcttggccggcgacattggcatcttgaaccacgccgccgccgcgggtgatggtttcagcttcgccgttgcatctttgcagacgttcatggagtggcaatctggtgaaggatccgcggccatcctgcacctccaggagatggccaagctctccgtgctccaatgttcagttggcagtgatctagatgaggacaacaccaagaacaacgacagcagatgggttgtcaagaacctggccatgccttttgactcgcaaggggattttgggccgcgccaatggaagagcaacatcgccttcgcctatgccggcaaattgtattgggctgactacgacgttggccttatctactgtgatgtcctggaatcttcacccaagctccagttgatcaagttccctgtcccggtgagaaaatgtgagcttggtgtcagtggtccagatgacaactgcgggaactctgagtccttcaggacagccggtgtttctaatgggaagatcaagttcgtcgatgttgacaattgccgctcccaatccttcgccgtcatcatcaggacgtggacactgcaaatgccacagatggtatggaagttggatgatgtactcgatgtcaaacaactgtgggggtcagcatccttcaagaaatacgatttgcatcagtgggtgccagagtatcctgtggtgagcttgctagacccacacattgtgcactttgtgctgcacaaacatatgtaccatgatcaggtctggatgatcgcagttgacatgagggccaagtcagttaaatcatgcaagaactatccaaagggtgagaaggaggatggatacaaggggctgtcgttcaacattgatttcatatgcagcatgctctcgaagtaa
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| Protein seq | MPPTLEHGYCGRSSLVAADATHLLLLVVVPVKIQGMYDHEYPEEYFVYTADALRPSLADALCPTLTRLPRFPDNRQRLAGDIGILNHAAAAGDGFSFAVASLQTFMEWQSGEGSAAILHLQEMAKLSVLQCSVGSDLDEDNTKNNDSRWVVKNLAMPFDSQGDFGPRQWKSNIAFAYAGKLYWADYDVGLIYCDVLESSPKLQLIKFPVPVRKCELGVSGPDDNCGNSESFRTAGVSNGKIKFVDVDNCRSQSFAVIIRTWTLQMPQMVWKLDDVLDVKQLWGSASFKKYDLHQWVPEYPVVSLLDPHIVHFVLHKHMYHDQVWMIAVDMRAKSVKSCKNYPKGEKEDGYKGLSFNIDFICSMLSK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0179700 | RBH | 2.372782 | 1.700714 | 5.594836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07940 | RBH | 1.596898 | 1.139094 | 1.372223 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0179700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005230 | RBH | 1.677919 | 17.778534 | 8.001163 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005450 | RBH | 0.0 | 0.0 | 0.183568 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005490 | RBH | 1.030543 | 10.211274 | 9.477956 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005320 | RBH | 0.241632 | 0.377773 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005440 | RBH | 0.602322 | 0.0 | 1.301217 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0067100 | RBH | 1.016397 | 3.9168945 | 3.2852695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005410 | RBH | 0.055671 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0071400 | RBH | 1.027027 | 4.485499 | 2.8395935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005440 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005410 | RBH | 0.159084 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005380 | RBH | 0.770715 | 6.014523 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005230 | RBH | 0.0 | 0.0 | 0.204168 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005420 | RBH | 0.260982 | 0.0 | 0.0 |
