Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0005070 | OGI:12010350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:3811443-3815797 | ||||||||
| Gene Symbol | RFC2, OsRFC2 | ||||||||||
| DNA seq | cctccagacttcgcaaaacctCcccccaaaagaaccagagagaagaggcgggaagcgaagccgcagcccaccactcgcctccgccctccgcgcgcgcgaacccctctccctcggcggcggcgacgaccaaggcggcggcggcggcggaagaggacgcggtagcccgatggcgccgctcgtgccgtcctcgcagccatgggtggagaaatagtaagcgccgccctctcttcccctcccccacaccattttcctccctcaatttgtccataagccctcatggattgccctagttgcgactgactgacccgctgctcatcctcctcccgttcgcagccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgccgacgtgagcccccacagccgccgcgggctaaaccctagctctgtttcttttttttttcctcttgtgaccccctgggaggtttctgatttgtgatctggtccctttgcagcttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgcttgcaattgcttaccagctctacgggtaactcaattcttactggcaactgattacttgattttttttttctctttatgagaatcttgttttggttcggttgaaattggcttatcttagtaatcttggaagaggtggtaattctcaatgcaatgggagcattagggcctgtttgggggagctttagattctgagaagcagctgtttagtagccagcttttgagaatctggaaaagctctgaaacccagcttctccagcttctggcttcttagttcatttttcagaatctgtaactacagattctcaaaagctgtggactgtttggagcagcttctagcagaagcagcttttgggaaaagctacagctgggataagctcccccaaacagggccttagataggctgcgctgggggtgaatcacttaacttttgagacattagaattgataaccttaatttggagtatgtaatactgcggaaatgccaaaaaaaggggatcaaatgccagaaattggcaaggatatgaagcttctgcacaaagttcgaccttcattatcttgggtattttgtttattttggcaaatatcggtatacatctttgtaggcaggcgttccaaaagtgggtacaattagtttgatgacatggttgatcctagtcctgcatattacaatactaatcggaccactggatcaatgtgtttgaatgatgtatggtgaaatggtagttcaagtttaaaatttggattgttgaaatgttgagatctgttataattttgttcactcgtcagccattttcattgtttctgggctaggtaatttattcttgcatctctcacaggccccttttttcttgttgagttgttaccacatcacttgcttgattagaatctattcgatgtgtgtaatggttcatgtcttaccaatgataattggaggcggtcagatgtatggagggaaatctagagaatcaaaattttcatgtggaatagcacatatgaattaagggaaaaaataatactgaaacagtttgttaggaggaaatttgattagattgagtagtagcgaagtttattctcttttttttttcaactgataatgagcactatagtgattgagattatctgtctgccaattttgctcttctaatatggtggttacttcctaaattcatttgcaagaaaaaccccattctaatcatgactactaaataatgaaataacattaagaggatatgttttctgcaaatagtgcaaggttgttctcagtaagtttgggactcatgatagttttttcgtactatttggatgtgcagtccagagctctacaagtcaagagttctagaacttaatgctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgttgctgttggttctgcacgaaaagggtaatttaaccaaaactagggacctttcagtttccatctgtagttgcattcttgactagtttgtttttgcgatggccttcagcggttatccctgcccaccatacaagattattatactagatgaagcagattcgatgacagaagatgcccaggtatagacaacaggcagaacgctaaaagccttgttgctgcagaaccgtgcgttgatgatgtcttatatctgtctgtagaatgctttaaggcgtactatggagacttactccaaagtgacaagattctttttcatatgcaattacatcagcaggtattagtttgtttctccttttttccccctgtggatctttatttgagtttatgtaattcattatcctaatgtgtaatacaggataatagaaccacttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaatcgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggtaactgtactgcattcacttcaaaatctaaatctacatttaaatatccgcatttttgctaacacttctttttatttttcataataggcattggctacactaagcaccatctctaatggtgacctccgccgtgctataacctatcttcaggtatggtttacctagtttggcgtttgcattatgtggtttatttatattaatcttaatttaatataccttttgttttttgttgcagagcgctgctcgcttatttggatcttctatttcttctactgacttgattagtgtttcaGgggtacattaccactcatttctgttcccttgcaaatgcctaaacttacatgtgtcatttattttgctattctatgtttgagtctgtacaaagtcacgcttacttgatgacattgttttcctgaaagtagcaaagtggattttgcaccattttgttaacaagatcctgtgcacgtggtgatcaaattgtttaattgagagaaattcggtgtacttgtaatctggaaaaacttctctcatgtcatgataaattttagtgtgcaagtagtttgtgattggtataagtagtccagggaaccttattttatgggaggttaaattattttgctcatcttgtttgtccatgtgtcaggctatccctgaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaacaaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacaggtcatctctatttaatttaaatctagatatgtgctgttttcaccttgtcatttgctaacctaactactccgtacagtttctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaaaagcttggggaagcagataaggtttgtcctactgggtttctcttctgtttttgttattctttcctactcccttcgcctccttatgaaagtggtttatgtggacaattatatatgacaaacatagaaataaatcttgctttgggaccgagggagtagatgcttgttccactatatctatagatttactttaccgaacaagtctttgtaagatccttcttgtcatcatgaggtgaatgtttgtgactaaaaacttagaaggcaacattgtatacaatgtaccatagatgattgtaatgaaggattgaattttctgtttctatgtttgtcatatattccacatactgaagttcaaataaaactgctaacttatatgtggaacagttccagcaattttatgtgtacatcattaaaagcatacacttaatatgatagctctgaagtattgttgctccatcccatttttctcattccatttcttttggaatatgtagtgcttggtcgatggagcggatgagtatttacagcttttggatgtggctagtgagactatccgcgctctttttgacatgccacaaacgctggtcttctaagagaaagatgacgcaggtggccatttctgcgagggatatcttctgtctcctttccaagtttaggttctGggggaagctcattttctcgacagactgttgtgccttttttatgtttgtgatggggattaaatagtgtgaactccacccttgtaaccaactgaattgtgcaccagtgtgtccatcatggaaagaatggttttcggcctgtcatcttgtacatcatgcatcattttcttgttctgcttatggtttgatggaagcttgcattggcatttcccggctcttaattccactcagtttgatgtcctcttttgttaactattttacaacggcatagtcctcttttgt
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| CDS seq | atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgccgaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgcttgcaattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaatgctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgttgctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatactagatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagacttactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaaccacttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaatcgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctacactaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgctcgcttatttggatcttctatttcttctactgacttgattagtgtttcaGgggctatccctgaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaacaaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagtttctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaaaagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttggatgtggctagtgagactatccgcgctctttttgacatgccacaaacgctggtcttctaa
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| Protein seq | MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF |
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| Function | Replication factor C subunit 2 [UniProtKB/Swiss-Prot:Q9FXM3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0005070 | OsLima_12g0005070.01 | Chr12 | 3811443 | 3815797 | + | NAM | ||
| CDS seq | atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgccgaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgcttgcaattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaatgctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgttgctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatactagatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagacttactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaaccacttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaatcgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctacactaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgctcgcttatttggatcttctatttcttctactgacttgattagtgtttcaGgggctatccctgaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaacaaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagtttctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaaaagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttggatgtggctagtgagactatccgcgctctttttgacatgccacaaacgctggtcttctaa
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| Protein seq | MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.095314 | 0.158421 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0176500 | RBH | 0.529213 | 2.417608 | 4.780344 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g07720 | RBH | 0.329327 | 1.539530 | 1.146141 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0176500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005070 | RBH | 0.512816 | 3.464204 | 3.642184 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005280 | RBH | 0.300991 | 0.714102 | 2.123484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005330 | RBH | 2.305870 | 6.612421 | 5.736127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005150 | RBH | 0.218901 | 0.333108 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005260 | RBH | 3.893352 | 5.789904 | 5.675356 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0064700 | RBH | 7.607424 | 14.968904 | 11.9384285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005240 | RBH | 0.399348 | 1.072566 | 1.195685 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0069000 | RBH | 6.5108895 | 14.4699785 | 26.031079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005320 | RBH | 0.813530 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005260 | RBH | 4.603878 | 12.774830 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005230 | RBH | 0.801313 | 0.0 | 1.123230 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005200 | RBH | 0.474853 | 5.570917 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005080 | RBH | 0.525767 | 3.579187 | 1.654897 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005270 | RBH | 0.757233 | 13.996418 | 7.418592 |
