Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0004310 | OGI:12008720 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:3197199-3204606 | ||||||||
| Gene Symbol | ACTPK6, OsACTPK6 | ||||||||||
| DNA seq | acccaaaacatccaatcttcattataatagacgggcacggcggtaaattctgagtagcaggtcgttgATatatcaagctaggccgatccaatttcctctatgtaagaacaatgagaactgagaccgaaaaaattaggccccaagatgattgctcaaaatgcatataaaaatgcaaaaccaagccaaaaatgattacgctctactcctctcaacattagtgaggcacacatcctaaacaagcacatcggtgaacgaacgagacaaacgtcaggtaatatatgcaggggatcaatctttggctcctgagtcatcttgtcgttggctggcctctcctgaagttccctgcaaaacagcaaaagggtaaatcttgtcagtctttggaacaggagaatatttacaggatttttacatgggttagtcttcccacaaaaaatctttgaaactccttcattccaatttccaaaggaggacttaggacatgggactagctaaactttctctgttcatggttgttcaggccaagggaaatacctgaacacgtgcaagaagatcctctagttcggctaatatatctgagaaaggaggtcggttggatggaatgccttcccaacatctccgcatcaagtctaatagctggggatgagcattttctgggagccctgggcgcaatcccttgtataacagtaaaatgtcatgcttagtgcatttcacaatgcgcgtattatggtaaactgtaacaagtaataactgacagcatattatttgaatagaagaaacctgcatatactacacacctgtctcacacctacagctgcttggagaggggtcatggtattataagggatctgaaaataccagaaacgaaaatttgacaagccttagcaaacactaataaatgcacaatgtagataattgtgtctcttcacagaaaatcgtgtaccttggacgttatgagctcccaaagcacaatagcaaaactgaacacatcagctttgttatcatagggttgatgatttatgacctagcaacgccgcatcgaagatatattagcaaggaatataatattcttgtacctttagtagacaatataaactaggtaactatagaatgtccatgcaaactatagaacattcagattattgaaacaaagaaaaagtcttgtctagcaccttgaaccttaagacaaagcatctAaaaccctgagctttacaataagttcatataacctcccaaagtgatttttgcctaagtggaatacacattggatgggttttgcccatgtcgcgtaaatgctgaacatacgtatcaaaatctccacttactatctcctctttatcccaattcattctctcaccaaGggaacaaggactgaaaaaatgcttgtatgaccaaaaaaaaatatcaaactttaggaccaatgattgagaaagcaccaacatgtcatcctacttggacaaaaccgcttgttcaagtttccgtataggcaaaaccaccatacaaaacaacttaaggggaggggcagttgtttatagatggtattgcaaagtttggggggttacaaactaacctttaaaattcgaggtgctcggtggacttccattaaaagcttaagggggtggtatgcctatagggaaatttccatgaaacaacaaactattctgaactattcactttagcagtacaatatattatattgtgataagcatccaagttttgttttcgagacttcaaaaacagtaacaatattaggcacacttgaaactgaattactttgctccagcaacagagttgtacctctggtgccatccatctgtatgttccagtttcagctgtcatgttacctccttgatcctgaaaacgagctacaccaaaatctgccactttcacaacctagaaaaataataatgaagttatttatcagttcatagatattttctctcaagtgcaaagcagatggctcctgcacatacaaaaacacaaatgaagcatgattatattgcatcagtaccatttgcccacttgcataaactatactatcttgtcttaTtttttcccctcatatgttcatcaataaaatgttaaagattataggctacgtacatgatctttgtccattagaaggtttgcactctttaaatctctatggataatacccctctgatgcaagtaacacatccctctgcatacatcaactgcaaacttcagcagagttggaaggtccaagacattatgctgcttgtgcacaaagtcatacaggcttcctccagacatgtattctgaaagatataaaagtagatgatgagcattagtaggaatcttccagtcaccaagatataaattaagcaagaacccgctctttgtcacataataacaagcataattatatggaattaaaaattacatctcaccaatattgtgaaattaattagcattgtgtaataattattcagcacatgctttatttttaggaacaaactattctttgcaaattccccggtgagaaccaattgatgtcataaatcttaccagtaattatgcaaaattgtggtggttttgtgcacgcaccaatgaatcgcacaacattagtatgctgaacttccctgaaaacaagtatgggagatcaaggcaaggcataaatatttagttattggtacttgcatgaactgggtaatttcagacattcttaatctaagagcagtaatatgctcatggctaagaattggatatgcttaaactattcattcacaatggtaaatgctaaaaaagaattatataaacaaaacaccttattataatgttaaataccttagaatatatacttcctgtgtgaactcattccaaacattcttattcaaatgctcagatcttagaattttaacagcaacatcctcaccgagataagtcccatgataccttgacataaggataacacaccataaaaacaaagtgcaataaatacagtgataaaacaactcagcagtatacaattgacttacaaatccccacaagatccagaagcaatcatCcctcccatcttcagcagtcgtttgtcaatttcccattcaccaccttttacttggaatggcagtgttctttctgcagctgatgagtgagatgaacctgaccatgatccctgcattttcagagagcaccagcaaatatgctgttagatttgtcaaatggaacaagacattgtatcatgcatcaactccttgcaaaaatacaaaataggattatatccgcatggaaaatgcttattgcttagacgatcataatatatatcacaagttacctcattccttaaaatggacgcttccagtgccttgtgcaaaccatcagtgtcctgatcaaccattgcaacgttggcatcatttaaaaaaaacagttcataataaaagaaccagaatggctggccaactcattggcataaaacttcacagaattggttgtttagacagtatatcgttggttgtcataccagactgctaaccagccggtaggtggttttcagggcagaatggaatactattcccccacccccaaacacacataccccccaaaaaatgagacactccataatataattctcatgcacaccatcagatggagaataaaacagcatgttatcattataacttccataaccatgtctgtctaaactgaggtaagcctcaagacaaaaatgcaatgagtagatcgtggcaagttcaggattagttctcaaggaagggaattacaatggtagtagttcaaacttaagtctatgaaatgattccatcgtttagatgaataaaccctttaactattccagcactagtaaccattgttttctaggaacagaaggccagacgaaagacttcaatacatcagttctgcaatttacatctagacagttcagcaaatgacatgataagaaccagatattacctcaatgggccagccatcaacaacaaaaacatcaagagaatagttgtcaaatgtcgagaaaacatgcgcttccctgatgttcaatccaatgtcagatagcaaagcagacagctggcataacatattgcagttagatgataacgatatactgtgagcaaaaagtcaaacgactagtaagcacatgcttaaattggaacaatgatttagaaaatgccaatgtatcatgaggttaagttagaaggcacataaaattgctgacctgactaaggagctttggcttgtcaacagtggagaaaaccacctcatgaatgtgtgcgtatgatgtgtcctgcctgcacaatatacatagccaacttagcaagcctataaaaggtcaagatatctcaagcttctctctaggctatgtgcatgggcatgtaatagtgtgttcatgcaagtccacaagtggtgttgacttattcaaggagatttaggggatacataacttatgtgggatggtttacttcacaaatacttgaggttagtaccgatattctgtatttatgcatattctctatttttctggtgcagagtgcactgactatagaagtaaatgtatacaaacatacaaacactattgtgttaatctgtatggttcctatgcaataaggacttaagataactataatgaagatatgatgtatatcgaagctacagaactttaggtacaacatatcagaagcatacaaaggaagcagacaacaatgagtcaggaaggttagtatgtaaattcttgagtgcaccaagctaaatgtttaaccctttcttacttcatttttttctgtaaagaatgtctgattacaatgttcctttcccacacataataatgagtggaagacattttatctacaatgacacatgattttaggaccatcaggatctccaattctctacggtggcacccacttgtcatggagagattatacgggagatggggtatagttttttcaacaagcagtgccaaatgccaatttgatccaagagggcaccacctcatggaccaaaacactcccatgacaagcagactctaccaccacattgtgtcccatctagacgctacataggccaaaaccactattaaacggacagataacaagttttacccggttttcagagttgagtagcaggttttagccagctttggagttgatggacgaaaattaaaccacaccaagagttactggacaagaaaaataatctttccttcctaaaaaacaatggaagcagcatcctagcactgtgcatgattaccttacagagagatcatcaccatcatcagccccatcttcagatgcgtcagagtcatatgtcggatccacttcttcaatctttgatcaaagtttagagtcaatttgacaactccgatttctattggtgatactaaagataaacaatcagtaatgcatggaacaaacatgtagcattggcaagataagaaaacataaaatctaaaagctagaggaacttatccctcccaatttctctatcaagatcatcaaatattgtaatgttatatgtagtatgccacataaaaaccatttaatatcatagctaaaaatgtacttctcacggacagtatagtaggtgtgagcatcatcccacctgtgctatggcatttttcaccaaagacaaccagctgcaatatatcatgtatatactatatgaacaatggtcaagcatgtattgacaaatacaccttgtcattttcttcagtatttaataagacagttcagaaaatcatggcaacactagtgtttgtctttgtacgacggccacagccctgtttacatatcatgtagagaagctcccaatgatagctacacacagttacttctaatgaaagaaataagaaaattgtcagtccactccatatctttttagattgtctacggcaaagcctttatttagtacaaaatcgagtgatatacacattgaactgaattattccttgcttcttgttgtgctcatctgtttcaccataaaataatgtgtactgttcattcagaaacctccttgaaatagtgcaatgacagctgtaccatgaaaaaatgctctaaagttacatggcaaaattcataatattggtgttacactattcttttcaatctagagttctagactttcctggccataataccattaagtatgaacaatatgcaacccatcatatgtaaacagaatacaactagtagccaccaatccactaaaggtgctatcattatcgcgtaacacaaattagttgcttctacaatagtccagatcaacataagagttttaccctcaagaaacgaacatggaacgcagggcgcctatcaggatcttttgcttctgccaagaccttctgatggactaagacgtcttcagctttgtcgacattgatatccagttgatagctacatagtgagaaaacaaaacaggaaccaatatttaactttatcattgcacaaagggcagaataatggaatagataatagcctatcaatactaaatccagaaaaaagacgattgcagttacaccaccttcctttttcagttatgacacaccataaaacatactcaggataactacacaggattatccaaacaagcaattacacaggatagctacaaggccaactccacggctgaaccaatcattccatttaaaaaaaaatctatgcaagtataggaaaaaaaccattgcctccagaatcagaatgggctattagtcaagccaatggataagaattcggaatcagaacctaataaaagtactttttggaagtgagtgatcccaccccaaaacaaacataaatgggttaatcactaattcaattccaagcttaactacaatcccagaacataccagtcaaaaatcgaagagatccagctctactcaataaatcacgcactgttccattcatcacagtagaagaaaagcactgaattcaaccatactgaattctaattccttggtcgactcaaacagcattcctaccaaaccaagcaccagataaaacttaactggaatgtcaccgcaactacaatttcacaccagttacacatgcatcacccagaagcttcatgagagcacccaaacccaaaacgattccaccacctacgtgagccgcgacaccgaacagggtttcaacgagaggaagcaaacgaacaggaggagcagaaattaaccaatcaaaccaaatcacctatgtggaagccgcatgaaatgggcctcgagctgtgcgcggaagtccggcgcggccgcctcctcgttcccctccgcgacgagccgctcgtacacctggttgcagatgttaagccctcccgcgccaccgccaccgccaccgccgctcccgcccgacgccgcgggcgccgccgcggggtcacgcggcggggacgagctctcccccacgccctcctccacgccgccaccaccgccgccctccgccgccgccgcagccat
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| CDS seq | atggctgcggcggcggcggagggcggcggtggtggcggcgtggaggagggcgtgggggagagctcgtccccgccgcgtgaccccgcggcggcgcccgcggcgtcgggcgggagcggcggtggcggtggcggtggcgcgggagggcttaacatctgcaaccaggtgtacgagcggctcgtcgcggaggggaacgaggaggcggccgcgccggacttccgcgcacagctcgaggcccatttcatgcggcttccacatagctatcaactggatatcaatgtcgacaaagctgaagacgtcttagtccatcagaaggtcttggcagaagcaaaagatcctgataggcgccctgcgttccatgttcgtttcttgaggctggttgtctttggtgaaaaatgccatagcacaggcttgctaagttggctatgtatattgtgcaggcaggacacatcatacgcacacattcatgaggtggttttctccactgttgacaagccaaagctccttagtcagctgtctgctttgctatctgacattggattgaacatcagggaagcgcatgttttctcgacatttgacaactattctcttgatgtttttgttgttgatggctggcccattgaggacactgatggtttgcacaaggcactggaagcgtccattttaaggaatgagggatcatggtcaggttcatctcactcatcagctgcagaaagaacactgccattccaagtaaaaggtggtgaatgggaaattgacaaacgactgctgaagatgggaggGatgattgcttctggatcttgtggggatttgtatcatgggacttatctcggtgaggatgttgctgttaaaattctaagatctgagcatttgaataagaatgtttggaatgagttcacacaggaagtatatattctaagggaagttcagcatactaatgttgtgcgattcattggtgcgtgcacaaaaccaccacaattttgcataattactgaatacatgtctggaggaagcctgtatgactttgtgcacaagcagcataatgtcttggaccttccaactctgctgaagtttgcagttgatgtatgcagagggatgtgttacttgcatcagaggggtattatccatagagatttaaagagtgcaaaccttctaatggacaaagatcatgttgtgaaagtggcagattttggtgtagctcgttttcaggatcaaggaggtaacatgacagctgaaactggaacatacagatggatggcaccagaggtacaactctgttgctggagcaaagtaattcagtttcaaatcccttataataccatgacccctctccaagcagctgtaggtgtgagacagggattgcgcccagggctcccagaaaatgctcatccccagctattagacttgatgcggagatgttgggaaggcattccatccaaccgacctcctttctcagatatattagccgaactagaggatcttcttgcacgtgttcagggaacttcaggagaggccagccaacgacaagatgactcaggagccaaagattga
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| Protein seq | MAAAAAEGGGGGGVEEGVGESSSPPRDPAAAPAASGGSGGGGGGGAGGLNICNQVYERLVAEGNEEAAAPDFRAQLEAHFMRLPHSYQLDINVDKAEDVLVHQKVLAEAKDPDRRPAFHVRFLRLVVFGEKCHSTGLLSWLCILCRQDTSYAHIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTFDNYSLDVFVVDGWPIEDTDGLHKALEASILRNEGSWSGSSHSSAAERTLPFQVKGGEWEIDKRLLKMGGMIASGSCGDLYHGTYLGEDVAVKILRSEHLNKNVWNEFTQEVYILREVQHTNVVRFIGACTKPPQFCIITEYMSGGSLYDFVHKQHNVLDLPTLLKFAVDVCRGMCYLHQRGIIHRDLKSANLLMDKDHVVKVADFGVARFQDQGGNMTAETGTYRWMAPEVQLCCWSKVIQFQIPYNTMTPLQAAVGVRQGLRPGLPENAHPQLLDLMRRCWEGIPSNRPPFSDILAELEDLLARVQGTSGEASQRQDDSGAKD |
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| Function | Serine/threonine-protein kinase STY46 [UniProtKB/Swiss-Prot:F4JTP5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0004310 | OsLima_12g0004310.01 | Chr12 | 3197199 | 3204606 | - | NAM | ||
| CDS seq | atggctgcggcggcggcggagggcggcggtggtggcggcgtggaggagggcgtgggggagagctcgtccccgccgcgtgaccccgcggcggcgcccgcggcgtcgggcgggagcggcggtggcggtggcggtggcgcgggagggcttaacatctgcaaccaggtgtacgagcggctcgtcgcggaggggaacgaggaggcggccgcgccggacttccgcgcacagctcgaggcccatttcatgcggcttccacatagctatcaactggatatcaatgtcgacaaagctgaagacgtcttagtccatcagaaggtcttggcagaagcaaaagatcctgataggcgccctgcgttccatgttcgtttcttgaggctggttgtctttggtgaaaaatgccatagcacaggcttgctaagttggctatgtatattgtgcaggcaggacacatcatacgcacacattcatgaggtggttttctccactgttgacaagccaaagctccttagtcagctgtctgctttgctatctgacattggattgaacatcagggaagcgcatgttttctcgacatttgacaactattctcttgatgtttttgttgttgatggctggcccattgaggacactgatggtttgcacaaggcactggaagcgtccattttaaggaatgagggatcatggtcaggttcatctcactcatcagctgcagaaagaacactgccattccaagtaaaaggtggtgaatgggaaattgacaaacgactgctgaagatgggaggGatgattgcttctggatcttgtggggatttgtatcatgggacttatctcggtgaggatgttgctgttaaaattctaagatctgagcatttgaataagaatgtttggaatgagttcacacaggaagtatatattctaagggaagttcagcatactaatgttgtgcgattcattggtgcgtgcacaaaaccaccacaattttgcataattactgaatacatgtctggaggaagcctgtatgactttgtgcacaagcagcataatgtcttggaccttccaactctgctgaagtttgcagttgatgtatgcagagggatgtgttacttgcatcagaggggtattatccatagagatttaaagagtgcaaaccttctaatggacaaagatcatgttgtgaaagtggcagattttggtgtagctcgttttcaggatcaaggaggtaacatgacagctgaaactggaacatacagatggatggcaccagaggtacaactctgttgctggagcaaagtaattcagtttcaaatcccttataataccatgacccctctccaagcagctgtaggtgtgagacagggattgcgcccagggctcccagaaaatgctcatccccagctattagacttgatgcggagatgttgggaaggcattccatccaaccgacctcctttctcagatatattagccgaactagaggatcttcttgcacgtgttcagggaacttcaggagaggccagccaacgacaagatgactcaggagccaaagattga
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| Protein seq | MAAAAAEGGGGGGVEEGVGESSSPPRDPAAAPAASGGSGGGGGGGAGGLNICNQVYERLVAEGNEEAAAPDFRAQLEAHFMRLPHSYQLDINVDKAEDVLVHQKVLAEAKDPDRRPAFHVRFLRLVVFGEKCHSTGLLSWLCILCRQDTSYAHIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTFDNYSLDVFVVDGWPIEDTDGLHKALEASILRNEGSWSGSSHSSAAERTLPFQVKGGEWEIDKRLLKMGGMIASGSCGDLYHGTYLGEDVAVKILRSEHLNKNVWNEFTQEVYILREVQHTNVVRFIGACTKPPQFCIITEYMSGGSLYDFVHKQHNVLDLPTLLKFAVDVCRGMCYLHQRGIIHRDLKSANLLMDKDHVVKVADFGVARFQDQGGNMTAETGTYRWMAPEVQLCCWSKVIQFQIPYNTMTPLQAAVGVRQGLRPGLPENAHPQLLDLMRRCWEGIPSNRPPFSDILAELEDLLARVQGTSGEASQRQDDSGAKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.657561 | 0.442670 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0163800 | RBH | 5.050463 | 6.749542 | 5.984157 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06670 | RBH | 3.410845 | 4.533253 | 1.538275 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0163800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004270 | RBH | 2.417625 | 17.949911 | 20.336645 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004530 | RBH | 0.505757 | 8.528882 | 5.711300 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004500 | RBH | 1.775570 | 19.057402 | 15.023384 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004340 | RBH | 0.585373 | 0.362681 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004550 | RBH | 21.173742 | 31.484930 | 45.971416 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0055800 | RBH | 7.8759835 | 46.2117805 | 28.438087 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004540 | RBH | 1.929820 | 2.753751 | 4.647525 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0019400 | SBH | 11.4159725 | 2.744852 | 35.6147575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004500 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004540 | RBH | 2.843521 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004540 | RBH | 13.912924 | 65.825691 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004500 | RBH | 3.685553 | 0.0 | 3.956125 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004430 | RBH | 1.310595 | 17.084644 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004350 | RBH | 1.422943 | 3.126848 | 3.360709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004560 | RBH | 8.403964 | 68.629982 | 21.432602 |
