Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0003450 | OGI:12006930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:2443957-2447155 | ||||||||
| Gene Symbol | PAP20B, OsPAP20b | ||||||||||
| DNA seq | gtccgcatagtttagattagatttacacggctttatatatctatgcgcctcttgttgtgtcatatcgactgatatatatagttcttctcatcttgcatgcaattgaaagcttgtccaatatcgtcgactgatcgatttgggcgagagacgacttttgtgagcttgtgaccatatggcaatggcgagcgtagcagcgttgcgtctcgtcgtcctcctcgccgccgccgtgccgctgctgccgccgccggcggcatcgctggccgtgacgtcgacgtacgtgcggccgacggcgagggcgacgctgtccgtgctccacgacggcgatggccgaacgccgcagcaggtaagctctcgttcgatcggtcgatgtccacgtcagatgtgttctcctcctctttctttctttcgctcgttggttcgatcgatttcagaggaatctgaaaatgtttacgtacacgaatgaatgcttcgaccatacagaaagttgagtacttatgagttctttctttgtgctcaatcatgagtaatacgaaaagttactttctgtaaattttgctgatagtgcaagtaatcagcatgcatagtttcagtacagtaatcttcctgactcctgagccatccttcatccttttctttttctgttggaggttctgaaaagaaatatctcaattatctgcatacattaagtttcaacataatctgtgttgaaaagattatatgttattcatgttgtcagaattgtcaatgatcataaccggaaaatgatttatattttgtactgcatgatgcttaatctctctttctgaagaatgaagtttatatttcaagtaatttcagaagaagtggtgaggggtctagagtctagacggttctattagacagtttgcatgaatcaggaagcaagtactcggttttatacatattaattttgtcattttcatgcatggtagccctggtactacttgaaaaatatgagaaacaaagttggaccaaaatttcctgccacatgttgagttggaacaaaagtcaattgcaaatatgtgcttcaatctattcaggtcaattttaacatgagtggattagcaactgaaacttgtgggcactgcacccatgcccaaatttttttaataagcacaatcatttattaccattgttgtccctgctagctagtatacatgtatggctcggtatatatgtaatagagtttaaaaaacataaactacaattatgttgctgtctttcttctgaatcatcaagttagctaacaaaataagcaatagcattggcgtattatttgccagtagaaagatagcccatgaaatttctgagaaagaaagtgaaataattaaagaaatatgttaatgaattgtggattgctatatatttagcctgaaattgatgttcatgtacagcttagaagattgcaaagtcatgccagtgaaggtgatcaatatcatagaatctgagaggaaattaaactgatttccaaagaaaaacctcagagaaaatcaagaacccagtttcttcctgaatctgtgttcagagaactcaatcgctgctctgaataagattacagtttgtctatcagattactacagtttttgcaacaatgaagtgtatcttctcaagaatgataaaaattaaaattacccttttgcaatagttgacaaatgacttgcaattaactgtagctaaacttcatttgctagtgagattgacacattttgctgaaacttcaggtgcatatatcagctgtaggctctgacaagatgagggtgacgtggatcaccgacgacgacgcgccggccaccgtggagtacggcacggtctccggcgagtacccattctcggcggccggaaacaccaccacctactcctacgtcctctaccactccggcaacatccacgacgtcgtcatcggcccactcaaacccagcaccacctacttctaccgctgcagcaacgacacgtcgcgcgagctctccttccgtacgccgccggcgagcctcccgttcaagttcgtcgtcgtcggcgacctcggccagacggggtggacggcgtcgacgctgcggcacgtcgccgccgacgactacgacatgctgctcctccccggcgacctgtcgtacgccgacttctaccagccgcggtgggacacgttcggccgcctcgtcgagccgctggcgagcgcgcggccatggatggtgacggagggcaaccacgaggtggagaggatcccggtcatccacccgcggccgttcacggcgtacgacgcgcggtggcgcatgccgcacgacgccggcgcgtcgccgtcggggtccaacctctactactccttcgacgtcgccggcggcgccgtgcacgtcgtcatgctggggtcctacgccggctacgccgccggctcggcgcagcaccggtggctgcggcgcgacctcgcgggggtcgaccgcgccaagacggcgttcgtggtggcgctggtgcacgcgccgtggtacaacagcaacagggcgcaccgcggcgagggcgacgccatgcgcgccgccatggaggagctcctctacggcgcccgcgtcgacgcggtgttcgccggccacgtccacgcgtacgagaggttcgcgcgggtgtacggcggcggcgaggacgcgtgcgggccggtgcacgtgaccgtcggcgacggcggcaaccgggaggggctcgccacgaggtacgtcgacccgcagccggcggcgtcggcgttcagggaggcgagcttcgggcacggcaggctggaggtggtgaacgccacgcacgcgctgtggacgtggcggcggaacgacgacgacgaggcggtggtcgccgacgaggtgtggatcaccagcctcgcatccaacccggcttgcaacaagaaggattccatcagcttgtattgatgtgtgagaaactaggatgacgataggtagtgtgattctcttgatgattatactacttgataaatctctctcacataaattatatagtatatggttaatttgtaagttatgatatgaaaccatatttttattagcaaaactaatttataaattgattggactagaagtgcattcgtacaaagaaACacacacctcataaagctttgtaaatacttcgtactactttgtaaagcggtttataaatgTAtatactttgtactgtaccaaagaagcaataaagcttcttgaatttt
More
|
||||||||||
| CDS seq | atggcaatggcgagcgtagcagcgttgcgtctcgtcgtcctcctcgccgccgccgtgccgctgctgccgccgccggcggcatcgctggccgtgacgtcgacgtacgtgcggccgacggcgagggcgacgctgtccgtgctccacgacggcgatggccgaacgccgcagcaggtgcatatatcagctgtaggctctgacaagatgagggtgacgtggatcaccgacgacgacgcgccggccaccgtggagtacggcacggtctccggcgagtacccattctcggcggccggaaacaccaccacctactcctacgtcctctaccactccggcaacatccacgacgtcgtcatcggcccactcaaacccagcaccacctacttctaccgctgcagcaacgacacgtcgcgcgagctctccttccgtacgccgccggcgagcctcccgttcaagttcgtcgtcgtcggcgacctcggccagacggggtggacggcgtcgacgctgcggcacgtcgccgccgacgactacgacatgctgctcctccccggcgacctgtcgtacgccgacttctaccagccgcggtgggacacgttcggccgcctcgtcgagccgctggcgagcgcgcggccatggatggtgacggagggcaaccacgaggtggagaggatcccggtcatccacccgcggccgttcacggcgtacgacgcgcggtggcgcatgccgcacgacgccggcgcgtcgccgtcggggtccaacctctactactccttcgacgtcgccggcggcgccgtgcacgtcgtcatgctggggtcctacgccggctacgccgccggctcggcgcagcaccggtggctgcggcgcgacctcgcgggggtcgaccgcgccaagacggcgttcgtggtggcgctggtgcacgcgccgtggtacaacagcaacagggcgcaccgcggcgagggcgacgccatgcgcgccgccatggaggagctcctctacggcgcccgcgtcgacgcggtgttcgccggccacgtccacgcgtacgagaggttcgcgcgggtgtacggcggcggcgaggacgcgtgcgggccggtgcacgtgaccgtcggcgacggcggcaaccgggaggggctcgccacgaggtacgtcgacccgcagccggcggcgtcggcgttcagggaggcgagcttcgggcacggcaggctggaggtggtgaacgccacgcacgcgctgtggacgtggcggcggaacgacgacgacgaggcggtggtcgccgacgaggtgtggatcaccagcctcgcatccaacccggcttgcaacaagaaggattccatcagcttgtattga
More
|
||||||||||
| Protein seq | MAMASVAALRLVVLLAAAVPLLPPPAASLAVTSTYVRPTARATLSVLHDGDGRTPQQVHISAVGSDKMRVTWITDDDAPATVEYGTVSGEYPFSAAGNTTTYSYVLYHSGNIHDVVIGPLKPSTTYFYRCSNDTSRELSFRTPPASLPFKFVVVGDLGQTGWTASTLRHVAADDYDMLLLPGDLSYADFYQPRWDTFGRLVEPLASARPWMVTEGNHEVERIPVIHPRPFTAYDARWRMPHDAGASPSGSNLYYSFDVAGGAVHVVMLGSYAGYAAGSAQHRWLRRDLAGVDRAKTAFVVALVHAPWYNSNRAHRGEGDAMRAAMEELLYGARVDAVFAGHVHAYERFARVYGGGEDACGPVHVTVGDGGNREGLATRYVDPQPAASAFREASFGHGRLEVVNATHALWTWRRNDDDEAVVADEVWITSLASNPACNKKDSISLY |
||||||||||
| Function | Probable purple acid phosphatase 20 [UniProtKB/Swiss-Prot:Q9LXI7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0003450 | OsLima_12g0003450.01 | Chr12 | 2443957 | 2447155 | + | NAM | ||
| CDS seq | atggcaatggcgagcgtagcagcgttgcgtctcgtcgtcctcctcgccgccgccgtgccgctgctgccgccgccggcggcatcgctggccgtgacgtcgacgtacgtgcggccgacggcgagggcgacgctgtccgtgctccacgacggcgatggccgaacgccgcagcaggtgcatatatcagctgtaggctctgacaagatgagggtgacgtggatcaccgacgacgacgcgccggccaccgtggagtacggcacggtctccggcgagtacccattctcggcggccggaaacaccaccacctactcctacgtcctctaccactccggcaacatccacgacgtcgtcatcggcccactcaaacccagcaccacctacttctaccgctgcagcaacgacacgtcgcgcgagctctccttccgtacgccgccggcgagcctcccgttcaagttcgtcgtcgtcggcgacctcggccagacggggtggacggcgtcgacgctgcggcacgtcgccgccgacgactacgacatgctgctcctccccggcgacctgtcgtacgccgacttctaccagccgcggtgggacacgttcggccgcctcgtcgagccgctggcgagcgcgcggccatggatggtgacggagggcaaccacgaggtggagaggatcccggtcatccacccgcggccgttcacggcgtacgacgcgcggtggcgcatgccgcacgacgccggcgcgtcgccgtcggggtccaacctctactactccttcgacgtcgccggcggcgccgtgcacgtcgtcatgctggggtcctacgccggctacgccgccggctcggcgcagcaccggtggctgcggcgcgacctcgcgggggtcgaccgcgccaagacggcgttcgtggtggcgctggtgcacgcgccgtggtacaacagcaacagggcgcaccgcggcgagggcgacgccatgcgcgccgccatggaggagctcctctacggcgcccgcgtcgacgcggtgttcgccggccacgtccacgcgtacgagaggttcgcgcgggtgtacggcggcggcgaggacgcgtgcgggccggtgcacgtgaccgtcggcgacggcggcaaccgggaggggctcgccacgaggtacgtcgacccgcagccggcggcgtcggcgttcagggaggcgagcttcgggcacggcaggctggaggtggtgaacgccacgcacgcgctgtggacgtggcggcggaacgacgacgacgaggcggtggtcgccgacgaggtgtggatcaccagcctcgcatccaacccggcttgcaacaagaaggattccatcagcttgtattga
More
|
|||||||
| Protein seq | MAMASVAALRLVVLLAAAVPLLPPPAASLAVTSTYVRPTARATLSVLHDGDGRTPQQVHISAVGSDKMRVTWITDDDAPATVEYGTVSGEYPFSAAGNTTTYSYVLYHSGNIHDVVIGPLKPSTTYFYRCSNDTSRELSFRTPPASLPFKFVVVGDLGQTGWTASTLRHVAADDYDMLLLPGDLSYADFYQPRWDTFGRLVEPLASARPWMVTEGNHEVERIPVIHPRPFTAYDARWRMPHDAGASPSGSNLYYSFDVAGGAVHVVMLGSYAGYAAGSAQHRWLRRDLAGVDRAKTAFVVALVHAPWYNSNRAHRGEGDAMRAAMEELLYGARVDAVFAGHVHAYERFARVYGGGEDACGPVHVTVGDGGNREGLATRYVDPQPAASAFREASFGHGRLEVVNATHALWTWRRNDDDEAVVADEVWITSLASNPACNKKDSISLY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0151000 | RBH | 0.115438 | 0.0 | 1.187889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g05540 | RBH | 0.091571 | 0.000000 | 0.255585 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0151000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003420 | RBH | 0.0 | 0.0 | 0.206997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003650 | RBH | 0.0 | 0.777590 | 1.124779 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003660 | RBH | 0.0 | 0.0 | 1.101660 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003490 | RBH | 0.0 | 0.040210 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003680 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0044300 | RBH | 0.026239 | 0.046191 | 0.0072565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003660 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0048500 | RBH | 0.017 | 0.1982245 | 0.0059785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003680 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003480 | RBH | 0.0 | 0.493306 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003720 | RBH | 0.0 | 0.000000 | 2.143537 |
