Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0003120 | OGI:12006090 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:2149042-2152301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaacaagctgccgcctcaatccagcttagaaactccccacagagaaggggaggagctccaggaagggtgagggtgctgaccggcaacgaggaagacgacccaccgccgccagctcccttagcacaaccatctaggctgcgccgacgccggaaacattgccgctctggctccggcgccacccgccggcgctcccattgcccggccgccgctccccacctggccaccacggcggcatcggttgcccagccaccgaggcctggccgctcgcgcccgcaccggcgaggcacggccgccgcGcccggaacaccgccgccgtgccgcttggctacgcgcaccgctgccacgacggccgcacgtcgcctagcagcctccacgcctgggacggcgctactcggcagaacgccagttgtcaccgcttctgacgtggaggagcagaacgcccgtcgtcgccgcctctgacgcggaggagggagaacaccagccgccgcgCcccaccaccacggccgcacgccgccacgccgctcggcagccgcacgccgccaccacggtcgcacgccgcccagccGcctcgcgccaactccaggcGggggatggctggatccggccttGgggggccggatccaccgcctcccCAcacatccccgccgttgctgcctttgaccacgccggtggggagcttcgtcatcgtctcgtccacgtcgcgctgaggagggagaacgccacgaagaaggcctcgccgccgccttcccttctcgctgccggctttgccgccggcaagctccggcggcggcgaggtgggggagggggaagggatggaggcgcgggcggctagggttttttgccccccgagccgcccgcgcgagatagtattatgtggaaactgtttacttaaggcattttaccaaaggcaaactggtgataaaggaaaggtaggctcagatagtctagcccacttagaaaattgcagagatgaagataacctttgctgAaacggacgtcgcgaccagtctcacaaaactgaatcaataaatcatgattataatgttcaaattgaatgatcaagcttcctaaagggatgtgataacttttttcctcttacattctgtatctgtattaagtgtgaagctctgccttagcaacttattaattctacttggaaattgttataggtgttgtagaattaggcaggaattcatttttttaattcacaaataaccctttttttgtagttcccgcaaaaaAAGaagtgaatatacttctttgatagtatattctagcattgcaaatcctatcattacttctttctaaaccttctctctttgtattaagtcttgatatggctatggcttcctgcattgattggtctgaataatttcgtcattacaggatgtaccaaaatcattgggaagtgaccaggaagatgttagctacctaactagcaagcaagaacaattttcacagatgagatttctctcacgccaatccaaccggattgcatcctccgccgccaatcgcctccagattctattagtcaagtaattcgttacaagagttcgagtattaatacagcaccactcactcacgccacctctcctctcttgccagctacttagcccattcaggcccactcaaaagtttgttaggaaacctggcccgcttcctctgtggtgataagtccttccttcctccttcgttctcatcaccatcaaacagagtcttggcgccattgtcttgcggcagagcatcatcaccatcattcctgacagaagactggtcactatttactagtgtggatgaaaatttgaaccatgttcgaactacaaaccacattgaaacttgtaagtccacaggtcctaatgatgcagccatacttgacctgtacaaagaaactgagctggttgatgctgtacacatgacacaaagttcttcagaaagtgtgcagagcccttctgatatgttctcaaataatgaaatggtgagtaTttttgctattttgagtttgctattaccccccctccttttaatttcatgtgatgtacactaatgatcagtgatcagaactcttcatttgaaacagatgaaaatcattcaattaaatcttcaagcgataggacTttgattgatttctaccataagctgagggaagaaacactgacagtaatatttcggaatgggaaggattttaaggtcagtaaccactgattacattcagttgataaatcactggtatttttctgtttgtaattttgcaattcatttgataacaTtttttttgaacggaaaacagcacaagatagtgccTTttcatttgataacatggagtccagaagagttctatgctttctaatgaaaacagggaagttcagcaattgcaagggagattcaggtgtgctccgcactcaagcacttgaaactattgtttggcacaaaaaaaaatgaaTttaacatagtccgtcatttaaacattttccataatctccaggaaatctgtgagaaactacctgaaggtttttgtatagaggaacatactgcaaaggatgtattcatttctgaactgcttgacagtgccagagaggttcatttgaaggattttgaggaagaatatcatttaatagaaaagataccgatggtatgcattctcctatggggaatataatgtttcggcacactgcctatcttattactagtacttgttaggaattacctccttgagctagacccaaaataaactatttcattagatggtcaaatcttgcaatttattctcaagttactcgagatcaatacacttgttttgttaggtggatagcatgtaataatcacatgcacaattttctataagtgataaacataattatgtggaaatgaatggattagtgcttttccatattccgcattagaattgcctcctaactgatctgtagattatacaaaacaacgaaaatctgtagatggcacacaactaatttttctttgtttcagtatacaatatgtgcagttaatcttgcagtttaccattctaccttctgcttcttgttttcgtgggtcataatgcgatctttcttgggttattaaatttttataattcttatctgatactcaaatataagcactggaagacatgagtttggcagttgaactctacaagcacagcgtgtcaacattacataccttggagcaagcatccaaggaggagcaacgtgattacgtccgtgcctggtacagaatgcttctgttctgtgctcaagaattgcagcat
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| CDS seq | atgctgcaattcttgagcacagaacagaagcattctgtaccaggcacggacgtaatcacgttgctcctccttggatgcttgctccaagtaaatagtgaccagtcttctgtcaggaatgatggtgatgatgctctgccgcaagacaatggcgccaagactctgtttgatggtgatgagaacgaaggaggaaggaaggacttatcaccacagaggaagcgggccagttttgtgagactggtcgcgacgtccgttTcagcaaagtttccacataatactatctcgcgcgggcggctcggggggcaaaaaaccctagccgcccgcgcctccatcccttccccctcccccacctcgccgccgccggagcttgccggcggcaaagccggcagcgagaagggaaggcggcggcgaggccttcttcgtggcgttctccctcctcagcgcgacgtggacgagacgatgacgaagctccccaccggcgtggtcaaaggcagcaacggcggggatgtgTGgggaggcggtggatccggcccccCaaggccggatccagccatccccCgcctggagttggcgcgaggCggctgggcggcgtgcgaccgtggtggcggcgtgcggctgccgagcggcgtggcggcgtgcggccgtggtggtgggGcgcggcggctggtgttctccctcctccgcgtcagaggcggcgacgacgggcgttctgctcctccacgtcagaagcgcgccgtcccaggcgtggaggctgctaggcgacgtgcggccgtcgtggcagcggtgcgcgtagccaagcggcacggcggcggtgttccgggCgcggcggccgtgcctcgccggtgcgggcgcgagcggccaggcctcggtggctgggcaaccgatgccgccgtggtggccaggtggggagcggcggccgggcaatgggagcgccggcgggtggcgccggagccagagcggcaatgtttccggcgtcggcgcagcctagatggttgtgctaagggagctggcggcggtgggtcgtcttcctcgttgccggtcagcaccctcacccttcctggagctcctccccttctctgtggggagtttctaagctggattgaggcggcagcttgttag
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| Protein seq | MLQFLSTEQKHSVPGTDVITLLLLGCLLQVNSDQSSVRNDGDDALPQDNGAKTLFDGDENEGGRKDLSPQRKRASFVRLVATSVSAKFPHNTISRGRLGGQKTLAARASIPSPSPTSPPPELAGGKAGSEKGRRRRGLLRGVLPPQRDVDETMTKLPTGVVKGSNGGDVWGGGGSGPPRPDPAIPRLELARGGWAACDRGGGVRLPSGVAACGRGGGARRLVFSLLRVRGGDDGRSAPPRQKRAVPGVEAARRRAAVVAAVRVAKRHGGGVPGAAAVPRRCGRERPGLGGWATDAAVVARWGAAAGQWERRRVAPEPERQCFRRRRSLDGCAKGAGGGGSSSSLPVSTLTLPGAPPLLCGEFLSWIEAAAC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0003120 | OsLima_12g0003120.01 | Chr12 | 2149042 | 2152301 | - | NAM | ||
| CDS seq | atgctgcaattcttgagcacagaacagaagcattctgtaccaggcacggacgtaatcacgttgctcctccttggatgcttgctccaagtaaatagtgaccagtcttctgtcaggaatgatggtgatgatgctctgccgcaagacaatggcgccaagactctgtttgatggtgatgagaacgaaggaggaaggaaggacttatcaccacagaggaagcgggccagttttgtgagactggtcgcgacgtccgttTcagcaaagtttccacataatactatctcgcgcgggcggctcggggggcaaaaaaccctagccgcccgcgcctccatcccttccccctcccccacctcgccgccgccggagcttgccggcggcaaagccggcagcgagaagggaaggcggcggcgaggccttcttcgtggcgttctccctcctcagcgcgacgtggacgagacgatgacgaagctccccaccggcgtggtcaaaggcagcaacggcggggatgtgTGgggaggcggtggatccggcccccCaaggccggatccagccatccccCgcctggagttggcgcgaggCggctgggcggcgtgcgaccgtggtggcggcgtgcggctgccgagcggcgtggcggcgtgcggccgtggtggtgggGcgcggcggctggtgttctccctcctccgcgtcagaggcggcgacgacgggcgttctgctcctccacgtcagaagcgcgccgtcccaggcgtggaggctgctaggcgacgtgcggccgtcgtggcagcggtgcgcgtagccaagcggcacggcggcggtgttccgggCgcggcggccgtgcctcgccggtgcgggcgcgagcggccaggcctcggtggctgggcaaccgatgccgccgtggtggccaggtggggagcggcggccgggcaatgggagcgccggcgggtggcgccggagccagagcggcaatgtttccggcgtcggcgcagcctagatggttgtgctaagggagctggcggcggtgggtcgtcttcctcgttgccggtcagcaccctcacccttcctggagctcctccccttctctgtggggagtttctaagctggattgaggcggcagcttgttag
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| Protein seq | MLQFLSTEQKHSVPGTDVITLLLLGCLLQVNSDQSSVRNDGDDALPQDNGAKTLFDGDENEGGRKDLSPQRKRASFVRLVATSVSAKFPHNTISRGRLGGQKTLAARASIPSPSPTSPPPELAGGKAGSEKGRRRRGLLRGVLPPQRDVDETMTKLPTGVVKGSNGGDVWGGGGSGPPRPDPAIPRLELARGGWAACDRGGGVRLPSGVAACGRGGGARRLVFSLLRVRGGDDGRSAPPRQKRAVPGVEAARRRAAVVAAVRVAKRHGGGVPGAAAVPRRCGRERPGLGGWATDAAVVARWGAAAGQWERRRVAPEPERQCFRRRRSLDGCAKGAGGGGSSSSLPVSTLTLPGAPPLLCGEFLSWIEAAAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003100 | SBH | 1.623007 | 20.024506 | 6.631257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003331 | RBH | 0.0 | 9.658522 | 3.121027 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003330 | SBH | 1.900017 | 11.198158 | 5.826061 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003140 | RBH | 0.151110 | 0.167225 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003350 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0003290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002910 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002920 | SBH | 0.0 | 0.0 | 0.0 |
