Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0002800 | OGI:12005350 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1911660-1914678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cggcctcaccttcatccactccagtcccgtcccgtttccttgctgcccggccgtctgcccctcaacctcatcgcGcaatctccatcaccgtccggcgtccgcgagcagcggtgcagagggcgtccttactcgttccgcgcgccccgcccaggtcaatctccccgtaccctcagcctcgactctctgagtctccacgcgatcgacttcgcccgcagcctgcgccgaccctctcgatctccatccatcccacgaggggagcaccggtgggtgccgtcgtcctccggtgagcaccacgacgcacatcctttttctttatggttcatccctatcgttctaccctatcttctcttctagatctgaaagcttttctctttgtcttaaccttagtactgacaacaacagttcttcccccaaaaagaatttagggggttcatgtccctgttggtacacgatgaaccctgcaagccgaagacattatgattctctcgtcgcgcgatatggtgaccaagatgcactcgccgaccgtttcggcggccaaaacgacggccctgacgcctggtggtccaacctgcgtgtgcggatgtctcaggatcatctactgaggcacgaggcgcggaggcgagccgccaccttggaggctttcgaggatagagaaaactcgcatgatggtgcctttggttgcggtgaccgggcctctgctaaggccatggtaactctgcatcagcccaatttgggcgagaccagggagcaggattgcgccgtgtgccttgagcctttcgaggaaggcaacacgcttagaatgatgccatgtttccattccttccatcagcgctgcatcttcagttggctccgcattagccgcatctgcccggtgtgccgtttcacgctgccctCccaggctgattttgagtcggagaaggctgagaaagaacgagttagtgcttcacctgaagatggcaataactgattgatgaagatcaatctgcttagtgagttactttgcttgtgtcctgtctcacaattgagttgatcttatttatgcttcatggttgatatatttatcatctaaagatggcagcaattgtcctgctccacttaaatattcttggtagatatatttattagagtaaatttcagaacattctgtgttttgtggtcttaattgcataatgctccggatattatggcatgtagcatataaccctagtcattatggtatcaaggtttcgcaaaacctagcattcactcaaatcataaaaaaaacaacttgttgacacatattcacttcatttttcatgccataaaccactatgtattgttcaaatgttggttacttgatcaggatgaccagtttaatcagtcaacgttttgaacattattatgtcaaggatggtaaaattagctgaaatttgaactaggatggattttatgatacttctaggttatagagcatagggttatgtgcctcgagtcataatatccggaggtttatgcaactttgaccgcaaaatgtggttttttgtgaaatttactctgattagagtagatttcagaacaccatgtaagtttatttatgggattgtcaatcataaactttgttgtttgatccaatatacttcaaggaagaatatttatctcccgtctaatgaaaaattagaagcaaagatgctgtcttttgcatcattgatgtaatcttttcattggtaacctttgtagattactttaattgtaattggtagctcatcattgttgccgggatcaggtacccccaggcaaatgggtggttatgttgtaatcctcagcgccttgctgctgagctcgtaccagtttctcctcctaATaaacatggccggcccagtgaaaagtattgttcattggtagttgtctttctcattgacaccaatgcaaggccttgtgcctgacatatgtaagaagAaaatatagtgatgggcttacacattctttttttttatccctggtgagtactttgtttacgcaaattattttttatccctggtgaatacttggtttacacaaatcccggtgcagtgagactgttgtgctactccattccaatatcgctgaaatgatgggataatcatcttcatatctcataacattgcagatctttgatgttagcaggttttggttggaatttgtgtgtactgaacacatgagacacatcctattatcagataccatggttattttgtcagttgccttgtagtgtttttccacctacaattatcgccatcttttgccttcagttcatgtagaccctgaatatataaagttgtgtgtgtggttccaattatatacagttctgtaagatcatgccgtcgcatccttgactaataaggaggcaagcactaaaataactgcctgcagttctgcatctatattagcatatcattttccttctctactgattttagctattgttcagttggattttcctatctttaaatcatattgtgcatgtcatgcacattctgttgtagtagaactagtgtagagtggagaaaccctgaaattgcacagattaaaaagtaacagctagtaagtattgtaggtggcaaataggcagagttgtctcctgttttgtactctaccgaaacagcaagtatgttgtacaggtggcaaatagacgaagtgtctattggttttttactgtactgaaacagagcaaatttcagtgaagacatctcaccatatgcagaattatccctgtaatgccaatgcactagcgagagctagcatctgaaatttttcttggttttcagatttgtccttacacagtactagtagtagttctgctgtgcttagaaacttgtttaagctttgtccttgccttaacactagtactgtatcgagaatttcaactttgctgctgtgcatactgatgtttcgagtaacccgttataaatttttgacgaattctgttgtttgaatctgtgtttaggttccatttacagctcttattgtcagtttggggattgatctgatcatcccattataa
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| CDS seq | atgaaccctgcaagccgaagacattatgattctctcgtcgcgcgatatggtgaccaagatgcactcgccgaccgtttcggcggccaaaacgacggccctgacgcctggtggtccaacctgcgtgtgcggatgtctcaggatcatctactgaggcacgaggcgcggaggcgagccgccaccttggaggctttcgaggatagagaaaactcgcatgatggtgcctttggttgcggtgaccgggcctctgctaaggccatggtaactctgcatcagcccaatttgggcgagaccagggagcaggattgcgccgtgtgccttgagcctttcgaggaaggcaacacgcttagaatgatgccatgtttccattccttccatcagcgctgcatcttcagttggctccgcattagccgcatctgcccggtgtgccgtttcacgctgccctCccaggctgattttgagtcggagaaggctgagaaagaacgaattactttaattgtaattggtagctcatcattgttgccgggatcaggtacccccaggcaaatgggtggttatgttgtaatcctcagcgccttgctgctgagctcgtaccagtttctcctcctaATaaacatggccggcccagttccatttacagctcttattgtcagtttggggattgatctgatcatcccattataa
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| Protein seq | MNPASRRHYDSLVARYGDQDALADRFGGQNDGPDAWWSNLRVRMSQDHLLRHEARRRAATLEAFEDRENSHDGAFGCGDRASAKAMVTLHQPNLGETREQDCAVCLEPFEEGNTLRMMPCFHSFHQRCIFSWLRISRICPVCRFTLPSQADFESEKAEKERITLIVIGSSSLLPGSGTPRQMGGYVVILSALLLSSYQFLLLINMAGPVPFTALIVSLGIDLIIPL |
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| Function | E3 ubiquitin-protein ligase RDUF2 [UniProtKB/Swiss-Prot:Q940T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0002800 | OsLima_12g0002800.01 | Chr12 | 1911660 | 1914678 | + | NAM | ||
| CDS seq | atgaaccctgcaagccgaagacattatgattctctcgtcgcgcgatatggtgaccaagatgcactcgccgaccgtttcggcggccaaaacgacggccctgacgcctggtggtccaacctgcgtgtgcggatgtctcaggatcatctactgaggcacgaggcgcggaggcgagccgccaccttggaggctttcgaggatagagaaaactcgcatgatggtgcctttggttgcggtgaccgggcctctgctaaggccatggtaactctgcatcagcccaatttgggcgagaccagggagcaggattgcgccgtgtgccttgagcctttcgaggaaggcaacacgcttagaatgatgccatgtttccattccttccatcagcgctgcatcttcagttggctccgcattagccgcatctgcccggtgtgccgtttcacgctgccctCccaggctgattttgagtcggagaaggctgagaaagaacgaattactttaattgtaattggtagctcatcattgttgccgggatcaggtacccccaggcaaatgggtggttatgttgtaatcctcagcgccttgctgctgagctcgtaccagtttctcctcctaATaaacatggccggcccagttccatttacagctcttattgtcagtttggggattgatctgatcatcccattataa
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| Protein seq | MNPASRRHYDSLVARYGDQDALADRFGGQNDGPDAWWSNLRVRMSQDHLLRHEARRRAATLEAFEDRENSHDGAFGCGDRASAKAMVTLHQPNLGETREQDCAVCLEPFEEGNTLRMMPCFHSFHQRCIFSWLRISRICPVCRFTLPSQADFESEKAEKERITLIVIGSSSLLPGSGTPRQMGGYVVILSALLLSSYQFLLLINMAGPVPFTALIVSLGIDLIIPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.189141 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0140600 | RBH | 1.632581 | 1.177020 | 1.074478 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04650 | RBH | 1.176592 | 0.674333 | 0.245091 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0140600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002780 | RBH | 0.766403 | 12.814079 | 2.398825 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003000 | RBH | 0.0 | 0.620420 | 1.350413 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003010 | RBH | 2.371605 | 5.837188 | 3.549375 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002800 | RBH | 0.093127 | 0.208207 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003040 | RBH | 5.178267 | 4.031639 | 10.198505 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0035000 | RBH | 5.9212755 | 4.908561 | 4.2774335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0003020 | RBH | 0.406020 | 0.353076 | 0.728707 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0037200 | RBH | 5.6258575 | 5.3899535 | 9.1988425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0003020 | RBH | 0.405394 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003050 | RBH | 6.351502 | 6.378016 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002980 | RBH | 1.660866 | 0.0 | 0.125649 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002900 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002820 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002830 | SBH | 0.0 | 0.0 | 0.0 |
