Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0002740 | OGI:12005230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1883593-1886207 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacgaaggtgttcctacctctgttccagcctctgaattttcttctctgtgacaagcacaacacacacagcacatgcccatctgaacattctgaaaccaaagcaagaacagagctcactcatggcgatgtcgatgtggtaatagcagcgcttgggctccgtgtcaacagggagggcgacgagtgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctggggagaactggaggaagctttcagcgtgttcgacgttgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcacgacgctggatatgaggagtgtgaaagaatgctcaaggttttcgacagagacggcgatggaaataatggaatgatcaattttgacgagtttaaagtcatgatgcaaggagttatctgagTtttttttttttcagagaaaaggttcatcgccggagctgcctgagtgactgactactcgatctgaaaacatatacatacgcccctatcgatcgcctgaggctgatagttttgtttcttgatttgaacaagtgatggtagctgagctgaaactttttttttttttttgaaaccgaattgtgttaccgaaaactttgccgatgtatggctgcatatcaatttgaggagttcctgtctatcatcggttcattgctttgatacgcaccacagtccacagtaatggatcggcatgccgctttgtactgacaggatatatttggcaatcagtacactcaggagtaataagtccatagaataatttccactggaccttacatggtggtaaagttatatactttcagaaatatatgaacgggctggctatgggccagaagctccgtcgtggtggtgtcagcccatcatattttttcagggaaaaactggaggcgcgtctcctccgttccatcgtaatccttctccgatccgaatttgcttcgtatagcctatacctgtctgcctataaattctacacgacggcaactcatccccaattcccccatctattcttcgccaccggtaacatccatcgatcgatctccacccggactcaggtcgcctccacttccagcagagagagctccgcgctacgcatggatcccacgaccgggacaggttccgggtgcgaggtcaccaagaagatccctagttggatgatgaggaagacgctaatgcaatgtatggaggccggccactttggcaaggacgccatggatatgatgcggctggaacatgcactcccctgcggttcttcaccggccgagagtgggcagcaagacggtggagcggagctgctcggtgtgcctcaagaatttcgaggaggatgactacatctggtcgatgccctgctcccacactttccatcacctctgcatcttgggcgaccgttcctgcagggtctgtcacccggcagctcccccattcacggaggagaaaccggaggcccctcggactatgcattgattgaatgaattcgcgcggaatcagtgcttgtttaactgatcaatgtcgtggccgtgcaacaaatctgcatttctctgaaaattgcaaaaacctgctactctctgaataatctgaattttttgtctccagttttcctgggaatcccttatggaatatttctttttgtctcaagttatcctgtgaatcccttatggaaatttgtaaccggatgtttaaattcacatagttatatatatttacttctgctttcttgatattcagttcaatgtctgtaatagctctttgggtattagtatatgttagcctggttttcttgggccagccaataagagaaacaaaagggatcgacagatttgagaattcgtaattcagtgcatatatagttcctgaaaataattcagggagggtgtccataaaaatgttacaagggaaaagctatgccggcgatgattgttatcattttttaaaaaagaatagctatgcctattttcattgtattactgttttatatatgataatgacagtgtcccaatatttcccagaaatgctctggtttaactaaacatcaggtttatacactcagtgcgacacacatgttgatgtatggtcccttgcctgacgaacatcagtgttcttggaccatatgatgccattctatatagttcctactgatctaacaaattgttgtcctgacacaaagctgcatgaagcaaatgacagatttatatataaccgggactagcacaatgccgatgctaaagctagaaggcaagcagagtttctgtggtaatggcagcacttgggctccgtgtcaacggggagggcgacgagcgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctgggaagaactagaggaagctttcagcgtgttcgacggcgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcgtgacgctggccatgaggagtgtgagagaatgctcaaggttttcgacagagacggcgatggaatgatcaattttgatgagtttaaagtcatgatgcaaggagttgtctga
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| CDS seq | atgacgaaggtgttcctacctctgttccagcctctgaattttcttctctgtgacaagcacaacacacacagcacatgcccatctgaacattctgaaaccaaagcaagaacagagctcactcatggcgatgtcgatgtggtaatagcagcgcttgggctccgtgtcaacagggagggcgacgagtgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctggggagaactggaggaagctttcagcgtgttcgacgttgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcacgacgctggatatgaggagtgtgaaagaatgctcaaggttttcgacagagacggcgatggaaataatggaatgatcaattttgacgagtttaaagtcatgatgcaaggagtcaccaagaagatccctagttggatgatgaggaagacgctaatgcaatgtatggaggccggccactttggcaaggacgccatggatatgatgcggctggaacatgcactcccctgcgtgggcagcaagacggtggagcggagctgctcggtgtgcctcaagaatttcgaggaggatgactacatctggtcgatgccctgctcccacactttccatcacctctgcatcttgggcgaccgttcctgcagggcaagcagagtttctgtggtaatggcagcacttgggctccgtgtcaacggggagggcgacgagcgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctgggaagaactagaggaagctttcagcgtgttcgacggcgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcgtgacgctggccatgaggagtgtgagagaatgctcaaggttttcgacagagacggcgatggaatgatcaattttgatgagtttaaagtcatgatgcaaggagttgtctga
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| Protein seq | MTKVFLPLFQPLNFLLCDKHNTHSTCPSEHSETKARTELTHGDVDVVIAALGLRVNREGDECSLVEDEALVLLEEKQASWGELEEAFSVFDVDGDGFISPLELQNVMRRLGLQHDAGYEECERMLKVFDRDGDGNNGMINFDEFKVMMQGVTKKIPSWMMRKTLMQCMEAGHFGKDAMDMMRLEHALPCVGSKTVERSCSVCLKNFEEDDYIWSMPCSHTFHHLCILGDRSCRASRVSVVMAALGLRVNGEGDERSLVEDEALVLLEEKQASWEELEEAFSVFDGDGDGFISPLELQNVMRRLGLQRDAGHEECERMLKVFDRDGDGMINFDEFKVMMQGVV |
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| Function | Probable calcium-binding protein CML46 [UniProtKB/Swiss-Prot:Q93Z27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0002740 | OsLima_12g0002740.01 | Chr12 | 1883593 | 1886207 | + | NAM | ||
| CDS seq | atgacgaaggtgttcctacctctgttccagcctctgaattttcttctctgtgacaagcacaacacacacagcacatgcccatctgaacattctgaaaccaaagcaagaacagagctcactcatggcgatgtcgatgtggtaatagcagcgcttgggctccgtgtcaacagggagggcgacgagtgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctggggagaactggaggaagctttcagcgtgttcgacgttgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcacgacgctggatatgaggagtgtgaaagaatgctcaaggttttcgacagagacggcgatggaaataatggaatgatcaattttgacgagtttaaagtcatgatgcaaggagtcaccaagaagatccctagttggatgatgaggaagacgctaatgcaatgtatggaggccggccactttggcaaggacgccatggatatgatgcggctggaacatgcactcccctgcgtgggcagcaagacggtggagcggagctgctcggtgtgcctcaagaatttcgaggaggatgactacatctggtcgatgccctgctcccacactttccatcacctctgcatcttgggcgaccgttcctgcagggcaagcagagtttctgtggtaatggcagcacttgggctccgtgtcaacggggagggcgacgagcgttccttggtagaggatgaagctcttgtactattggaagagaagcaagcgagctgggaagaactagaggaagctttcagcgtgttcgacggcgacggcgatggattcataagtcccctggagctgcagaatgtgatgagaaggttgggtttgcagcgtgacgctggccatgaggagtgtgagagaatgctcaaggttttcgacagagacggcgatggaatgatcaattttgatgagtttaaagtcatgatgcaaggagttgtctga
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| Protein seq | MTKVFLPLFQPLNFLLCDKHNTHSTCPSEHSETKARTELTHGDVDVVIAALGLRVNREGDECSLVEDEALVLLEEKQASWGELEEAFSVFDVDGDGFISPLELQNVMRRLGLQHDAGYEECERMLKVFDRDGDGNNGMINFDEFKVMMQGVTKKIPSWMMRKTLMQCMEAGHFGKDAMDMMRLEHALPCVGSKTVERSCSVCLKNFEEDDYIWSMPCSHTFHHLCILGDRSCRASRVSVVMAALGLRVNGEGDERSLVEDEALVLLEEKQASWEELEEAFSVFDGDGDGFISPLELQNVMRRLGLQRDAGHEECERMLKVFDRDGDGMINFDEFKVMMQGVV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0140050 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0140050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002710 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002940 | RBH | 0.0 | 0.0 | 0.516591 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002950 | RBH | 0.0 | 0.0 | 0.931639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002980 | RBH | 0.0 | 0.0 | 0.915127 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0034300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0036400 | RBH | 0.1441555 | 3.4857505 | 0.076287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002840 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002920 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002810 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003040 | RBH | 0.0 | 0.0 | 1.606843 |
