Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0002370 | OGI:12004720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1646279-1648176 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttctaagataaccttttctttatttacgcacgcacacattcgttaattgcagcagtatacttgagtagtatacaggagtagtaatcagataggttgttattattacatgcgtgattaggcagctacatcttggttagtgtttcactaatccatggtgtaagcgatgctggtgagctcattcgcgtgcttctcccacagcgccacgaacacctccaccccaccacttttcctcaggctcggcatcaccaccaccaccccgtcctctggcaccttcgccggcaggatcccggcgagccgcccgccgagccccatgtccagccggtgcagctccaggtgcagccagctgtccgagtccacgtccggcgacagcacgccgggctcgtccacgttcgccggctgaagcggctcctcctcgtccctgccgccgtcgacgtggagcgccccgaagtcgatgaacgactggaagtagcgccggtcgacggcgcggatccccgcgcggatcagcgccgccgcgtccgcgagagtaccggtggtcagctccctcgctgtcgcgccggagctcgcgttgatgatgaggttgccgaagaagccgtttggcacggttcctgtcccgagccgggcgcggccgttcacggagacgttcaccgacgtgcgcgcgccggcgtcgagcccgcgcacggcggtgatcttcttccagacgtgcgccgacacggtctcgaacgtggtgtacttgccctgcgcgcgccgcttgagctcggcgacgaactcgctcgggtagtgcagcagcacgttggcgacctcggaagggtcgatgcggacggcgccggtgtcggcgccttgtccttgcctgctcgtgacgccgtcgtgcggcaagaactccttgccgcggtgctcgaactcgcaccgcggcggccggcgcggcgagagcgcgccggggccgtacggtacaggtcggtcaagcagcggagctccgttgcgacggacggcgtcggtccaggcgtgaaagaaggtgctcatggagaacccgtcggcggcctggtggtgagccgacgaggcgaccacgaggccgccgcacgcgaagcggttgatctgcaccagcagcacatgcggcgtcggcgcgtccgtgttgaccggcgggtggaggcgcgcgagctccggcgacggcgcgagcgggaggtggtcagcgaggtcggacgacacctcggcctccacgacgagtgcgccggcgccacctctgcccgtgacgaagaacgggcggcgacgggcgccgcggcggtcgaggcgcgcggtgaggagcgggaagtgcgggagcgtGgcggagagagcgtcgaggagggcgcgggtggtcgggttgggcggcgagaaggcgaagaggacggtgacgtggtatatatagcacggcagccgccacttgcgtatatatatgtcagtatgtcactagctcagctgtgttgctagtaacatttgaagtgtgcgtacgcgtgccaatctgttgaggcatgcaatgcttgatttgttgagctgccagaaattcaaccgtgcatacgtgcgaggggtctcagttgtacgggagacaaaaatacctactacgagtactaggaaccggacgtatatacgttcagatgaagcaggtatacgtagacagtggtcgagattgcgtggcacgcgccgcgctgtgctgcgcgcgggaatggattactccgactccgatcgattccgagtcctaatcaatctcgttgtgcctcacatcgtccactataataaaatctggtactcatccagttgttgcaacaacgcaaaagctggtctgactgctgcaggcgatggatccgccggctcgcagattgatggattctcgggcggcggcgcagttggcggcgccactttctgatccat
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| CDS seq | atggatcagaaagtggcgccgccaactgcgccgccgcccgagaatccatcaatctgcgagccggcggatccatcgcctgcagcatggcggctgccgtgctatatataccacgtcaccgtcctcttcgccttctcgccgcccaacccgaccacccgcgccctcctcgacgctctctccgcCacgctcccgcacttcccgctcctcaccgcgcgcctcgaccgccgcggcgcccgtcgccgcccgttcttcgtcacgggcagaggtggcgccggcgcactcgtcgtggaggccgaggtgtcgtccgacctcgctgaccacctcccgctcgcgccgtcgccggagctcgcgcgcctccacccgccggtcaacacggacgcgccgacgccgcatgtgctgctggtgcagatcaaccgcttcgcgtgcggcggcctcgtggtcgcctcgtcggctcaccaccaggccgccgacgggttctccatgagcaccttctttcacgcctggaccgacgccgtccgtcgcaacggagctccgctgcttgaccgacctgtaccgtacggccccggcgcgctctcgccgcgccggccgccgcggtgcgagttcgagcaccgcggcaaggagttcttgccgcacgacggcgtcacgagcaggcaaggacaaggcgccgacaccggcgccgtccgcatcgacccttccgaggtcgccaacgtgctgctgcactacccgagcgagttcgtcgccgagctcaagcggcgcgcgcagggcaagtacaccacgttcgagaccgtgtcggcgcacgtctggaagaagatcaccgccgtgcgcgggctcgacgccggcgcgcgcacgtcggtgaacgtctccgtgaacggccgcgcccggctcgggacaggaaccgtgccaaacggcttcttcggcaacctcatcatcaacgcgagctccggcgcgacagcgagggagctgaccaccggtactctcgcggacgcggcggcgctgatccgcgcggggatccgcgccgtcgaccggcgctacttccagtcgttcatcgacttcggggcgctccacgtcgacggcggcagggacgaggaggagccgcttcagccggcgaacgtggacgagcccggcgtgctgtcgccggacgtggactcggacagctggctgcacctggagctgcaccggctggacatggggctcggcgggcggctcgccgggatcctgccggcgaaggtgccagaggacggggtggtggtggtgatgccgagcctgaggaaaagtggtggggtggaggtgttcgtggcgctgtgggagaagcacgcgaatgagctcaccagcatcgcttacaccatggattag
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| Protein seq | MDQKVAPPTAPPPENPSICEPADPSPAAWRLPCYIYHVTVLFAFSPPNPTTRALLDALSATLPHFPLLTARLDRRGARRRPFFVTGRGGAGALVVEAEVSSDLADHLPLAPSPELARLHPPVNTDAPTPHVLLVQINRFACGGLVVASSAHHQAADGFSMSTFFHAWTDAVRRNGAPLLDRPVPYGPGALSPRRPPRCEFEHRGKEFLPHDGVTSRQGQGADTGAVRIDPSEVANVLLHYPSEFVAELKRRAQGKYTTFETVSAHVWKKITAVRGLDAGARTSVNVSVNGRARLGTGTVPNGFFGNLIINASSGATARELTTGTLADAAALIRAGIRAVDRRYFQSFIDFGALHVDGGRDEEEPLQPANVDEPGVLSPDVDSDSWLHLELHRLDMGLGGRLAGILPAKVPEDGVVVVMPSLRKSGGVEVFVALWEKHANELTSIAYTMD |
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| Function | Agmatine hydroxycinnamoyltransferase 1 [UniProtKB/Swiss-Prot:Q7XPK7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0002370 | OsLima_12g0002370.01 | Chr12 | 1646279 | 1648176 | - | NAM | ||
| CDS seq | atggatcagaaagtggcgccgccaactgcgccgccgcccgagaatccatcaatctgcgagccggcggatccatcgcctgcagcatggcggctgccgtgctatatataccacgtcaccgtcctcttcgccttctcgccgcccaacccgaccacccgcgccctcctcgacgctctctccgcCacgctcccgcacttcccgctcctcaccgcgcgcctcgaccgccgcggcgcccgtcgccgcccgttcttcgtcacgggcagaggtggcgccggcgcactcgtcgtggaggccgaggtgtcgtccgacctcgctgaccacctcccgctcgcgccgtcgccggagctcgcgcgcctccacccgccggtcaacacggacgcgccgacgccgcatgtgctgctggtgcagatcaaccgcttcgcgtgcggcggcctcgtggtcgcctcgtcggctcaccaccaggccgccgacgggttctccatgagcaccttctttcacgcctggaccgacgccgtccgtcgcaacggagctccgctgcttgaccgacctgtaccgtacggccccggcgcgctctcgccgcgccggccgccgcggtgcgagttcgagcaccgcggcaaggagttcttgccgcacgacggcgtcacgagcaggcaaggacaaggcgccgacaccggcgccgtccgcatcgacccttccgaggtcgccaacgtgctgctgcactacccgagcgagttcgtcgccgagctcaagcggcgcgcgcagggcaagtacaccacgttcgagaccgtgtcggcgcacgtctggaagaagatcaccgccgtgcgcgggctcgacgccggcgcgcgcacgtcggtgaacgtctccgtgaacggccgcgcccggctcgggacaggaaccgtgccaaacggcttcttcggcaacctcatcatcaacgcgagctccggcgcgacagcgagggagctgaccaccggtactctcgcggacgcggcggcgctgatccgcgcggggatccgcgccgtcgaccggcgctacttccagtcgttcatcgacttcggggcgctccacgtcgacggcggcagggacgaggaggagccgcttcagccggcgaacgtggacgagcccggcgtgctgtcgccggacgtggactcggacagctggctgcacctggagctgcaccggctggacatggggctcggcgggcggctcgccgggatcctgccggcgaaggtgccagaggacggggtggtggtggtgatgccgagcctgaggaaaagtggtggggtggaggtgttcgtggcgctgtgggagaagcacgcgaatgagctcaccagcatcgcttacaccatggattag
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| Protein seq | MDQKVAPPTAPPPENPSICEPADPSPAAWRLPCYIYHVTVLFAFSPPNPTTRALLDALSATLPHFPLLTARLDRRGARRRPFFVTGRGGAGALVVEAEVSSDLADHLPLAPSPELARLHPPVNTDAPTPHVLLVQINRFACGGLVVASSAHHQAADGFSMSTFFHAWTDAVRRNGAPLLDRPVPYGPGALSPRRPPRCEFEHRGKEFLPHDGVTSRQGQGADTGAVRIDPSEVANVLLHYPSEFVAELKRRAQGKYTTFETVSAHVWKKITAVRGLDAGARTSVNVSVNGRARLGTGTVPNGFFGNLIINASSGATARELTTGTLADAAALIRAGIRAVDRRYFQSFIDFGALHVDGGRDEEEPLQPANVDEPGVLSPDVDSDSWLHLELHRLDMGLGGRLAGILPAKVPEDGVVVVMPSLRKSGGVEVFVALWEKHANELTSIAYTMD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0134700 | RBH | 0.410552 | 0.0 | 0.390012 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04080 | RBH | 0.277637 | 0.0 | 0.100397 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0134700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002330 | RBH | 0.0 | 0.0 | 0.213251 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002550 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002600 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0029500 | RBH | 0.0094145 | 0.004602 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002580 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0031200 | RBH | 0.0394 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002530 | RBH | 0.123958 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002430 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002680 | RBH | 0.0 | 0.0 | 0.0 |
