Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0002130 | OGI:12004260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1472927-1475020 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgtggcaatgaagctggcggtcagtggcttcttatcagctgtcgtcgacggtgcagccaccaaggccgtcgcatgcctcgagagcaactacaatatgccggagcgtgccaaggagttgcttgctgaactagaggccaagctcaccatggtgaaggccATatccgaggcggcagacagccggctcatcaccaacaacaatcttgtccattggctgatgcgcctgcatgccgcggctcaggaagccgacgatgccctcgatgaattcgaggttgacgatgcaatcgtcacccgcaagcgcaaggccagcgacctcatactgtcatctcttagatctctcaagaatttggtcattccTGAtgatagcctgacaaggttggaacatgtcgtcaagaccctcacacagctctgtgcaacctcggccactttcattgagctcatcaagatggacatttccaaagcaaaccagctgcacaaggcaggagacactgcagaggccagctctcatcttcccgtagatgtcccagtctttggccgggatgaagtcaaggagttgatcctgaatatggttgctggatcattatcgcatgatcatgcagaatccagcagtggaactgcaaaagtaagagcagctaggcacaacttacttgttctcccaatagtcggtacaagtggcgtggggaagacaacgcttgcccaggttatctacgatgatgccaaagtgaaagagaactttgcgcatagagcttgggtctgtgtttcagagcatttcaccatcaaaagaattttgcaagaaatcctactttccttcaaaggatatgatggcacgagtttcgatggcgatgaaaacatggaagccactatcaccaggctcagtgtcaagatcagtggacgacatagattcttcttagtgttagacaacatatgggaagtaatgcgccaggaatggagcatgctgctgacagcattatccgatgaggcacgtcagcatggcagtgttctccttgtcacaactcagagccaaagagttgcacaaattgttgccacgatttgtcccataagcctgaaagcattgccttGggagagcttctggcctctttttcagtaccacgcatttggaggtatggaggtttttgatgacaaccaaaacatgctgttgattgctgaagggattgcgaagaagcttgatggattgccattagcagcaaaaataataggaaacctgttgagatgtagattctcctgggataactggagaagggttgctgagagtgattggtggaactcggacgaagctcttcagggtattctgccatacctcaagatcagttatcagcatctatcaccaaaacaaagacagtgcttagcctattgttcaatatttcccaggaattacctgtttgacaaggacaggacggttcagatgtggcttggacacgatttcatccagtggaacaacattgcagatggtacgaggctagaagatgttgggaggcagttatttgatgagctcgtggaaaggtccttattccaacccacatttgccagcaacaagtatgtcatgcctgatttggtacgcggtttagcaattgccgtttctctaaaccagtgcttcttccatggtgAaagatcaacaggagtttcatccccagcactgggaaatattcgccacctggcccttcagggtagtagcctggagcaacggcaagagctgaaaaagtacagaaatctgcgcactctcctactatttggctgttttgagagtgatgcattttttgacattctggatgggatgttggaaaactcaccaagtatccgtgtgctagacttatcatacgttgaagctccagggaaggtatggcccaaagatgctaggcccctgagaaaactgcgattccttgatctttcatttacaaagatcataaagttgaaagatctccccaccaacctccaagtcctgcatcttcgaggatatgatgctgatcgtgtgccacaaagtatcaccatgctgaccaacctacgacatctgtatgtagatgattcagcattgtccaagattcaaagtattggacagcaaactgaacttcaatag
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| CDS seq | atggctgtggcaatgaagctggcggtcagtggcttcttatcagctgtcgtcgacggtgcagccaccaaggccgtcgcatgcctcgagagcaactacaatatgccggagcgtgccaaggagttgcttgctgaactagaggccaagctcaccatggtgaaggccATatccgaggcggcagacagccggctcatcaccaacaacaatcttgtccattggctgatgcgcctgcatgccgcggctcaggaagccgacgatgccctcgatgaattcgaggttgacgatgcaatcgtcacccgcaagcgcaaggccagcgacctcatactgtcatctcttagatctctcaagaatttggtcattccTGAtgatagcctgacaaggttggaacatgtcgtcaagaccctcacacagctctgtgcaacctcggccactttcattgagctcatcaagatggacatttccaaagcaaaccagctgcacaaggcaggagacactgcagaggccagctctcatcttcccgtagatgtcccagtctttggccgggatgaagtcaaggagttgatcctgaatatggttgctggatcattatcgcatgatcatgcagaatccagcagtggaactgcaaaagtaagagcagctaggcacaacttacttgttctcccaatagtcggtacaagtggcgtggggaagacaacgcttgcccaggttatctacgatgatgccaaagtgaaagagaactttgcgcatagagcttgggtctgtgtttcagagcatttcaccatcaaaagaattttgcaagaaatcctactttccttcaaaggatatgatggcacgagtttcgatggcgatgaaaacatggaagccactatcaccaggctcagtgtcaagatcagtggacgacatagattcttcttagtgttagacaacatatgggaagtaatgcgccaggaatggagcatgctgctgacagcattatccgatgaggcacgtcagcatggcagtgttctccttgtcacaactcagagccaaagagttgcacaaattgttgccacgatttgtcccataagcctgaaagcattgccttGggagagcttctggcctctttttcagtaccacgcatttggaggtatggaggtttttgatgacaaccaaaacatgctgttgattgctgaagggattgcgaagaagcttgatggattgccattagcagcaaaaataataggaaacctgttgagatgtagattctcctgggataactggagaagggttgctgagagtgattggtggaactcggacgaagctcttcagggtattctgccatacctcaagatcagttatcagcatctatcaccaaaacaaagacagtgcttagcctattgttcaatatttcccaggaattacctgtttgacaaggacaggacggttcagatgtggcttggacacgatttcatccagtggaacaacattgcagatggtacgaggctagaagatgttgggaggcagttatttgatgagctcgtggaaaggtccttattccaacccacatttgccagcaacaagtatgtcatgcctgatttggtacgcggtttagcaattgccgtttctctaaaccagtgcttcttccatggtgAaagatcaacaggagtttcatccccagcactgggaaatattcgccacctggcccttcagggtagtagcctggagcaacggcaagagctgaaaaagtacagaaatctgcgcactctcctactatttggctgttttgagagtgatgcattttttgacattctggatgggatgttggaaaactcaccaagtatccgtgtgctagacttatcatacgttgaagctccagggaaggtatggcccaaagatgctaggcccctgagaaaactgcgattccttgatctttcatttacaaagatcataaagttgaaagatctccccaccaacctccaagtcctgcatcttcgaggatatgatgctgatcgtgtgccacaaagtatcaccatgctgaccaacctacgacatctgtatgtagatgattcagcattgtccaagattcaaagtattggacagcaaactgaacttcaatag
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| Protein seq | MAVAMKLAVSGFLSAVVDGAATKAVACLESNYNMPERAKELLAELEAKLTMVKAISEAADSRLITNNNLVHWLMRLHAAAQEADDALDEFEVDDAIVTRKRKASDLILSSLRSLKNLVIPDDSLTRLEHVVKTLTQLCATSATFIELIKMDISKANQLHKAGDTAEASSHLPVDVPVFGRDEVKELILNMVAGSLSHDHAESSSGTAKVRAARHNLLVLPIVGTSGVGKTTLAQVIYDDAKVKENFAHRAWVCVSEHFTIKRILQEILLSFKGYDGTSFDGDENMEATITRLSVKISGRHRFFLVLDNIWEVMRQEWSMLLTALSDEARQHGSVLLVTTQSQRVAQIVATICPISLKALPWESFWPLFQYHAFGGMEVFDDNQNMLLIAEGIAKKLDGLPLAAKIIGNLLRCRFSWDNWRRVAESDWWNSDEALQGILPYLKISYQHLSPKQRQCLAYCSIFPRNYLFDKDRTVQMWLGHDFIQWNNIADGTRLEDVGRQLFDELVERSLFQPTFASNKYVMPDLVRGLAIAVSLNQCFFHGERSTGVSSPALGNIRHLALQGSSLEQRQELKKYRNLRTLLLFGCFESDAFFDILDGMLENSPSIRVLDLSYVEAPGKVWPKDARPLRKLRFLDLSFTKIIKLKDLPTNLQVLHLRGYDADRVPQSITMLTNLRHLYVDDSALSKIQSIGQQTELQ |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0002130 | OsLima_12g0002130.01 | Chr12 | 1472927 | 1475020 | + | NAM | ||
| CDS seq | atggctgtggcaatgaagctggcggtcagtggcttcttatcagctgtcgtcgacggtgcagccaccaaggccgtcgcatgcctcgagagcaactacaatatgccggagcgtgccaaggagttgcttgctgaactagaggccaagctcaccatggtgaaggccATatccgaggcggcagacagccggctcatcaccaacaacaatcttgtccattggctgatgcgcctgcatgccgcggctcaggaagccgacgatgccctcgatgaattcgaggttgacgatgcaatcgtcacccgcaagcgcaaggccagcgacctcatactgtcatctcttagatctctcaagaatttggtcattccTGAtgatagcctgacaaggttggaacatgtcgtcaagaccctcacacagctctgtgcaacctcggccactttcattgagctcatcaagatggacatttccaaagcaaaccagctgcacaaggcaggagacactgcagaggccagctctcatcttcccgtagatgtcccagtctttggccgggatgaagtcaaggagttgatcctgaatatggttgctggatcattatcgcatgatcatgcagaatccagcagtggaactgcaaaagtaagagcagctaggcacaacttacttgttctcccaatagtcggtacaagtggcgtggggaagacaacgcttgcccaggttatctacgatgatgccaaagtgaaagagaactttgcgcatagagcttgggtctgtgtttcagagcatttcaccatcaaaagaattttgcaagaaatcctactttccttcaaaggatatgatggcacgagtttcgatggcgatgaaaacatggaagccactatcaccaggctcagtgtcaagatcagtggacgacatagattcttcttagtgttagacaacatatgggaagtaatgcgccaggaatggagcatgctgctgacagcattatccgatgaggcacgtcagcatggcagtgttctccttgtcacaactcagagccaaagagttgcacaaattgttgccacgatttgtcccataagcctgaaagcattgccttGggagagcttctggcctctttttcagtaccacgcatttggaggtatggaggtttttgatgacaaccaaaacatgctgttgattgctgaagggattgcgaagaagcttgatggattgccattagcagcaaaaataataggaaacctgttgagatgtagattctcctgggataactggagaagggttgctgagagtgattggtggaactcggacgaagctcttcagggtattctgccatacctcaagatcagttatcagcatctatcaccaaaacaaagacagtgcttagcctattgttcaatatttcccaggaattacctgtttgacaaggacaggacggttcagatgtggcttggacacgatttcatccagtggaacaacattgcagatggtacgaggctagaagatgttgggaggcagttatttgatgagctcgtggaaaggtccttattccaacccacatttgccagcaacaagtatgtcatgcctgatttggtacgcggtttagcaattgccgtttctctaaaccagtgcttcttccatggtgAaagatcaacaggagtttcatccccagcactgggaaatattcgccacctggcccttcagggtagtagcctggagcaacggcaagagctgaaaaagtacagaaatctgcgcactctcctactatttggctgttttgagagtgatgcattttttgacattctggatgggatgttggaaaactcaccaagtatccgtgtgctagacttatcatacgttgaagctccagggaaggtatggcccaaagatgctaggcccctgagaaaactgcgattccttgatctttcatttacaaagatcataaagttgaaagatctccccaccaacctccaagtcctgcatcttcgaggatatgatgctgatcgtgtgccacaaagtatcaccatgctgaccaacctacgacatctgtatgtagatgattcagcattgtccaagattcaaagtattggacagcaaactgaacttcaatag
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| Protein seq | MAVAMKLAVSGFLSAVVDGAATKAVACLESNYNMPERAKELLAELEAKLTMVKAISEAADSRLITNNNLVHWLMRLHAAAQEADDALDEFEVDDAIVTRKRKASDLILSSLRSLKNLVIPDDSLTRLEHVVKTLTQLCATSATFIELIKMDISKANQLHKAGDTAEASSHLPVDVPVFGRDEVKELILNMVAGSLSHDHAESSSGTAKVRAARHNLLVLPIVGTSGVGKTTLAQVIYDDAKVKENFAHRAWVCVSEHFTIKRILQEILLSFKGYDGTSFDGDENMEATITRLSVKISGRHRFFLVLDNIWEVMRQEWSMLLTALSDEARQHGSVLLVTTQSQRVAQIVATICPISLKALPWESFWPLFQYHAFGGMEVFDDNQNMLLIAEGIAKKLDGLPLAAKIIGNLLRCRFSWDNWRRVAESDWWNSDEALQGILPYLKISYQHLSPKQRQCLAYCSIFPRNYLFDKDRTVQMWLGHDFIQWNNIADGTRLEDVGRQLFDELVERSLFQPTFASNKYVMPDLVRGLAIAVSLNQCFFHGERSTGVSSPALGNIRHLALQGSSLEQRQELKKYRNLRTLLLFGCFESDAFFDILDGMLENSPSIRVLDLSYVEAPGKVWPKDARPLRKLRFLDLSFTKIIKLKDLPTNLQVLHLRGYDADRVPQSITMLTNLRHLYVDDSALSKIQSIGQQTELQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0131701 | SBH | 0.794949 | 0.375800 | 1.780737 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03750 | SBH | 0.463663 | 0.194652 | 0.357247 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0131701 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002090 | SBH | 0.254711 | 0.000000 | 1.026597 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002290 | SBH | 0.000000 | 0.299337 | 0.787763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002310 | SBH | 0.180973 | 1.057149 | 2.788832 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002120 | SBH | 0.040475 | 0.047225 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002170 | RBH | 0.680811 | 1.358953 | 1.275599 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0025800 | RBH | 1.2106685 | 6.6633365 | 1.783371 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002170 | RBH | 0.144417 | 0.157601 | 0.139015 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0026600 | RBH | 1.1525665 | 6.930641 | 3.4327755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001880 | SBH | 0.0 | 0.035971 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002310 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002200 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001270 | RBH | 0.202348 | 0.0 | 1.613540 |
