Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0002010 | OGI:12004400 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1411893-1415639 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaagcccggcgggggagggggtggggtggcggctgatgacggggaggggaggaaaccctagagcgagagggcggggagggggggagtcaagtcgccgcctctgcgcctgaggttgcgttgcgatgcgcggaggcggaggcggggaaggcggcgcggggcggtggcggtcggcaaaggaggcggcgaacggtgggagagggaggcggaggcgtcggggacggcgacgcgacggcggcggcggcgtgatggggagagggagagcgcgggggaggaggggactggcggcggtggctagggttgccgacttgcggggtgggttgttagggcgcgtcgttttgcgaaaaaaccccttgatttttaaattttatagcgcggtcctaatccaggcgcgacacgactattcctatacggctatacgcataggaggaggaagagcccatgaccgaactgcattgcttactgttgggcctggaattaggcccattacctgagaccgatgccgatacgattgagcctggaattgggtctggacttcgcacaacaagaagtagaacaagtacaggtacaggtgcaggtgcagatctaggtggagaaatttagtgccggttcattttgatgcgaaaaaaaaccttatcaaattttggtaggtatagttgacttgtcaaaattttggtaggatttcttatatagttacaaaaaTttgacagcaaactaaatgtagccacttttttggtaattttaccaaaatttggtaaagttgaaaatggcttcaaagtgaacaggcccttaacaatatgctacttagtaaatgtggctttaacagaagaccgctctctaggatgttcttataaaaatgccactcaatagagactgtttcttaataaaatgctactttggactattttgagacattttttatttgtttatatttttaatttttctcacactacgctcgcgaaatgaccgAaatacccttaggatcgtttagatatagagaatgcgtctcttctctttctcacgacttcttcttggcacgctaggggccgacgccgccaccgccgccctgtcggcgcgcgctcgcccagctgccgctactgtcgctgtcgctcgaccgcgcgcagtcgagaggagctaggggccgacgccgccccgtctgcgcgcccccggctggccacgctaccgtcacggcgtcgcccgtccacgcgcggccgatttcctctcggtcgcgctaggggccgacgccgccaccgccgccccgccgccccAccgcagcgccaacaccgagaaggagtcgttatcgccgcaggaaaggacacatgggtatttttgtcattccgcacatcttttgcgattaaaagcctcaaaatagcctaaagtggcattttattaagaacgagtctttatctttattgagtggcatttttataagaacatccctaaatagtgacattcggttagagtacctctattgattagcatattgtaaatttctccagacgcagctgagttcagctctgctcactattttatctccttaaaatatgttcttatagtctattattgtagctgctgtgatgatgtatttactcactgAaaatctgtgaggtgtcccaatcctgaaactacatggaacttctccattggcttgattgatggctgattaatgcttgtccgcaaagcacttcagccttatcatacagtagaatatagatcatttgtttacaaagtcaacggtacagatcatcaaaccaagtgttgactaaaaaatcatccaacattaactgacagtcaaaacctttcctgtctgctcagctcatcctgcatttgatactgcacagctgctggtatgatacaaacattgcttctataattctagggacaatttcgtttttcccccactttcatctttaatattgattttgcctctactctttagggtttttgttttttcccccaTtttttttttgaaccggaagagacgtttaccctggtttggatggaagttagtaggaccggctatatggcagtaaaataaatttttttcaaatttgtgttctacttttttaccgctggcactagtctaacagagaaccgattctttCccccaatctcgctgcttctctctcgagtctacaggcggcggcggcggctagagcacagctcctcccaccggcgagcaggagaggggtcggcggcggcgagagggctaggctggggggagagggctaggttgggcggccgagagggtggttggaggcgggggggagagggctaggcggcggcggcggtggctgatagggtggttggaggagcgaggcgattccgtccacctcgccgcgccatccctcgctgccgccaagcagatccatgcgcgggcgctccgggccggtgtgcccacctcccacccgctcctcgccaagcacctcctcttccacctcgccgtcctccgcgcgccgccgctccgctacgccgtggcggtactctCccgcctcctcccgcacgggccactagacccgttccccctcaacaccgtgcaccgcatcgctgcgggctcgttccgcccgtgcgtcgcgctcgagctccaccgccgccgcctcgcgccgcccgacaggcacacctacccgtcgctgctccaggcttgcgcgcgcctcctcgcgctccgcgaaggggagtgcctccataccgaggccgccaagaacgggttcgtccaaaactcgcccccgttcatctctacggcgcgtgtagcctgttcgagagcgtgcacaaggtgttcgatgaaatgccggtgcatgggcagaacctcgtctcgtggaattcgatgctcaacagctttgcggccaacgggcgccctaacgaggttctcactgtcttccgggagatgctgggcgtcaactttgcgccagatggagtcaccatagtcagtgttctaaccgcttgtgcagagattggggcgcttgctcttgggaggagggttcatgtgtatgcggaaaaggttgtgttggtggacaattcgcatgtgagcaatgccctgattaatctgtatgccaagtgtggtattgtcaacgatgcaaggctgatatgacttcatatgattgtgtaaaatgttgttgaaattttgtcaaaatttttgctcaatttctgtcaaaatgctgccgaaattttgtcaaaattccatcaaattcaaattatgtcccaattgtaatgtcaaaatctgtccaaatcaatcatttaattttaaacatattcacaaaaataattttccaaagccatgcataataggggcaaaaacacaattaatgaatagatatgggagagggtataaatgtcatatttaacaccgttaactcctccatccaaagcaggggcaaaagtatttttcggtttaaaaagtgggggcaaaaacaaaaaccctaaaaagtaggggcaaaatcaatattagagatgaaagtgggggaaaaatgaaattgccccataattctattaatcaatcgtagtcccaattactgctgtgaaccgaactactatcttctcacccagctttctttaagcagaagtttagaatttcagagttcagatgcacacaaactccattggacgcaacgtgcatgtacacctcgttatgcatatacaatactcagatctaagtcaaatcgctttcactaacactagtctattaccatattactatcttaattagtggtagtcactggtgcccaggcgatggaacgcacaaaactcttga
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| CDS seq | atggcgaagcccggcgggggagggggttgggcggccgagagggtggttggaggcgggggggagagggctaggcggcggcggcggtggctgatagggtggttggaggagcgaggcgattccgtccacctcgccgcgccatccctcgctgccgccaagcagatccatgcgcgggcgctccgggccggtgtgcccacctcccacccgctcctcgccaagcacctcctcttccacctcgccgtcctccgcgcgccgccgctccgctacgccgtggcggtactctCccgcctcctcccgcacgggccactagacccgttccccctcaacaccgtgcaccgcatcgctgcgggctcgttccgcccgtgcgtcgcgctcgagctccaccgccgccgcctcgcgccgcccgacaggcacacctacccgtcgctgctccaggcttgcgcgcgcctcctcgcgctccgcgaaggggagtgcctccataccgaggccgccaagaacggcctgttcgagagcgtgcacaaggtgttcgatgaaatgccggtgcatgggcagaacctcgtctcgtggaattcgatgctcaacagctttgcggccaacgggcgccctaacgaggttctcactgtcttccgggagatgctgggcgtcaactttgcgccagatggagtcaccatatcactggtgcccaggcgatggaacgcacaaaactcttga
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| Protein seq | MAKPGGGGGWAAERVVGGGGERARRRRRWLIGWLEERGDSVHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAVLRAPPLRYAVAVLSRLLPHGPLDPFPLNTVHRIAAGSFRPCVALELHRRRLAPPDRHTYPSLLQACARLLALREGECLHTEAAKNGLFESVHKVFDEMPVHGQNLVSWNSMLNSFAANGRPNEVLTVFREMLGVNFAPDGVTISLVPRRWNAQNS |
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| Function | Pentatricopeptide repeat-containing protein At4g21065 [UniProtKB/Swiss-Prot:A8MQA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0002010 | OsLima_12g0002010.01 | Chr12 | 1411893 | 1415639 | + | NAM | ||
| CDS seq | atggcgaagcccggcgggggagggggttgggcggccgagagggtggttggaggcgggggggagagggctaggcggcggcggcggtggctgatagggtggttggaggagcgaggcgattccgtccacctcgccgcgccatccctcgctgccgccaagcagatccatgcgcgggcgctccgggccggtgtgcccacctcccacccgctcctcgccaagcacctcctcttccacctcgccgtcctccgcgcgccgccgctccgctacgccgtggcggtactctCccgcctcctcccgcacgggccactagacccgttccccctcaacaccgtgcaccgcatcgctgcgggctcgttccgcccgtgcgtcgcgctcgagctccaccgccgccgcctcgcgccgcccgacaggcacacctacccgtcgctgctccaggcttgcgcgcgcctcctcgcgctccgcgaaggggagtgcctccataccgaggccgccaagaacggcctgttcgagagcgtgcacaaggtgttcgatgaaatgccggtgcatgggcagaacctcgtctcgtggaattcgatgctcaacagctttgcggccaacgggcgccctaacgaggttctcactgtcttccgggagatgctgggcgtcaactttgcgccagatggagtcaccatatcactggtgcccaggcgatggaacgcacaaaactcttga
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| Protein seq | MAKPGGGGGWAAERVVGGGGERARRRRRWLIGWLEERGDSVHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAVLRAPPLRYAVAVLSRLLPHGPLDPFPLNTVHRIAAGSFRPCVALELHRRRLAPPDRHTYPSLLQACARLLALREGECLHTEAAKNGLFESVHKVFDEMPVHGQNLVSWNSMLNSFAANGRPNEVLTVFREMLGVNFAPDGVTISLVPRRWNAQNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.171623 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130900 | RBH | 0.250918 | 0.511239 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03700 | RBH | 0.158144 | 0.320466 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002030 | RBH | 0.0 | 0.0 | 0.800767 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002230 | RBH | 0.0 | 1.080926 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002250 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002270 | RBH | 1.157821 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026600 | RBH | 1.3316675 | 2.752294 | 6.20309 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002280 | RBH | 0.0 | 0.143051 | 0.155612 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0027600 | RBH | 1.0983665 | 3.5194955 | 6.808951 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000560 | SBH | 0.016473 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002190 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002240 | RBH | 0.232734 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001020 | RBH | 0.0 | 0.0 | 0.894585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001210 | RBH | 0.545093 | 0.0 | 0.000000 |
