Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0001540 | OGI:11004350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:1034317-1037011 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgtatgatctgttaatgctttccctgtacacaacacaaagaaaccaataacacgatcatcaagacttgacaGgaggcagattatatatagtacataatattgactagttgattcctgtttcactccaaaaaggttggaattactgatacttactcagcaaagatgaagccccttctcctttactatgtgtagtctcatagaccaACTactcctcagcaaggggagaatctgaagacatacaacaaaatagtctatcttatataactgcagtaattgcaaatgcaacatggaattacatgctaacatggaattgcaaatgtacagtgatttagggaagagatttggtttgggattttaccttggcgcttgaaggaagcatgagttgtagggggcagctcaagggtgcatgttgggaggaatagagatgaggccaccttatgagggctactactgctgctgatgttactagtgtgagctgttgctgcaacattggaagccttggtgggagatgagaaggggctatgaggcaaattgtactccattccactacaaaacaaacatcaacaaacatgtcaataccagaaaaacaaacatcaacaaacatatcaataccagaaagtccttcggcaactagcatgacttgcacaaaaactacttaataataggcatttattgtgctaattagtttcttaactgctttatcctatccttgcctttgcatttcttttcccattggttccttctaatcaagaaaaacatttgatcaacattattaattgtctactccttatcttcttttgtatttgcttctaaagcaagaattgtttaagtcagagagaattatataacatacatgtgaaaaaaaaaggaaaaatatagcaaataaaagaggtaacaagtttaatggtatattctgtcctttttccaaaataaatatcctacattttagtgtccatctagcaaacctttttctATCatcatcttacctttccaggaatccacaagcatcattaggtgttgctgccttgggaccatattctctcttcccctcttccgtagagatgaccgtgcgcttggctgctgtggagattgcagtagaggcaatttccctcatagcaaactcattcttcagcttattgtctataaataaaacaagaagtcacaaccttagtacaacataattaataaactttccgaaaaaacataattaatagacaagacattacaacgaccaagaactagacctcgaaatgtgacatcctccaaatgagtgggattgtcattctcattaatattatatttgttatcaacttgtcctagaagcacatgtgaacccatgggagagctgagatgatggccccaatcctgaagattgagaagcggaagcctcattaagcaacaacgttgcagctcggtcgcatgttgttgttcatcttgcttcatcctaaaagatgcctcatgactagcaatgtccctatacaaaattctcggccctaacacaatgtaacactccttgtaaattgttaaaaaaagagatcaaaacacaagcaccacatagatatcactgttcacctatttggtgtcgtcgcaggccaaagggccccctagaataaagcaatctattgtgattcatgtagctagaagagtcactttgctgaaactttctgcaattttaataaaatcaatagactttatgcaatttttaagaaaatcaacagaagtactcacaaaagtggaattaggcaatgattaacatgcctgaacttgttggggaccttgtccttctccttgtatggcttgacaagaacacgtgcatcacagatgtaatgtgggttgcccttggcaagaattagcttcactgtcttttggtaggcgaaggtgacgaaaccaaacatgcacttctcctggtatgggatacgcacatcttgcaccatcccatacatgctggttgtccccacatgacacaaacaagccaaaacagattgcattcattaaattatgaaatgctccaatattgaaacaagacacatcaataggagcactatggtggaacatgtgatacctaaagtagttgcagacgtcctctttgctAaaaatggaatcaggcgggaaggtcaagtagatctgtcgtgcactgcagttgttggttaggtcactttggtctatctgaggtggtcgagaagagtactcttgcatgtcgtcgctaccaagatgggtggtcactccgctggtacaatagagattagtgtgtggatctaagaaatgtgatattatagggttgaagatggaacctttgggagtatagacatggcttccacccaggggtgtcgacggtgcttgacaaaaagctccgatggtgattgccaccgatgggtaacctccaatcatactccttagaggagaactcttcacctccatcacaccccaccttgtcaacggagaaagatgcttcctcacctatatcggacgggaagccccaggaggccataggaggggaaggcttgtttgtgaggtcggtgcgcaccttggcaatgatagattggaggaggttgtcagggccacaTgcgagacgaatcatgtccatctcattgttatccttggtgaggagcatgctaatgatgtttggagcaagattgggctcaagcgcttgcaaccgggcaaaaaccaccttggtggcctcataggcgcccat
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| CDS seq | atgggcgcctatgaggccaccaaggtggtttttgcccggttgcaagcgcttgagcccaatcttgctccaaacatcattagcatgctcctcaccaaggataacaatgagatggacatgattcgtctcgcAtgtggccctgacaacctcctccaatctatcattgccaaggtgcgcaccgacctcacaaacaagccttcccctcctatggcctcctggggcttcccgtccgatataggtgaggaagcatctttctccgttgacaaggtggggtgtgatggaggtgaagagttctcctctaaggagtatgattggaggttacccatcggtggcaatcaccatcggagctttttgtcaagcaccgtcgacacccctgggtggaagccatgtctatactcccaaagcggagtgaccacccatcttggtagcgacgacatgcaagagtactcttctcgaccacctcagatagaccaaagtgacctaaccaacaactgcagtgcacgacagatctacttgaccttcccgcctgattccattttTagcaaagaggacgtctgcaactactttagcatgtatgggatggtgcaagatgtgcgtatcccataccaggagaagtgcatgtttggtttcgtcaccttcgcctaccaaaagacagtgaagctaattcttgccaagggcaacccacattacatctgtgatgcacgtgttcttgtcaagccatacaaggagaaggacaaggtccccaacaagttcaggcatcaaagtgactcttctagctacatgaatcacaatagattgctttattctagggggccctttggcctgcgacgacaccaaatagggccgagaattttgtatagggacattgctagtcatgaggcatcttttaggatgaagcaagatgaacaacaacatgcgaccgagctgcaacgttgttgcttaatgaggcttccgcttctcaatcttcaggattggggccatcatctcagctctcccatgggttcacatgtgcttctaggacaagttgataacaaatataatattaatgagaatgacaatcccactcatttggaggatgtcacatttcgagacaataagctgaagaatgagtttgctatgagggaaattgcctctactgcaatctccacagcagccaagcgcacggtcatctctacggaagaggggaagagagaatatggtcccaaggcagcaacacctaatgatgcttgtggattcctggaaagtggaatggagtacaatttgcctcatagccccttctcatctcccaccaaggcttccaatgttgcagcaacagctcacactagtaacatcagcagcagtagtagccctcataaggtggcctcatctctattcctcccaacatgcacccttgagctgccccctacaactcatgcttccttcaagcgccaagggaaagcattaacagatcatacataa
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| Protein seq | MGAYEATKVVFARLQALEPNLAPNIISMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTDLTNKPSPPMASWGFPSDIGEEASFSVDKVGCDGGEEFSSKEYDWRLPIGGNHHRSFLSSTVDTPGWKPCLYSQSGVTTHLGSDDMQEYSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKCMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNKFRHQSDSSSYMNHNRLLYSRGPFGLRRHQIGPRILYRDIASHEASFRMKQDEQQHATELQRCCLMRLPLLNLQDWGHHLSSPMGSHVLLGQVDNKYNINENDNPTHLEDVTFRDNKLKNEFAMREIASTAISTAAKRTVISTEEGKREYGPKAATPNDACGFLESGMEYNLPHSPFSSPTKASNVAATAHTSNISSSSSPHKVASSLFLPTCTLELPPTTHASFKRQGKALTDHT |
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| Function | Zinc finger CCCH domain-containing protein 22 [UniProtKB/Swiss-Prot:Q10M00] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0001540 | OsLima_12g0001540.01 | Chr12 | 1034317 | 1037011 | - | NAM | ||
| CDS seq | atgggcgcctatgaggccaccaaggtggtttttgcccggttgcaagcgcttgagcccaatcttgctccaaacatcattagcatgctcctcaccaaggataacaatgagatggacatgattcgtctcgcAtgtggccctgacaacctcctccaatctatcattgccaaggtgcgcaccgacctcacaaacaagccttcccctcctatggcctcctggggcttcccgtccgatataggtgaggaagcatctttctccgttgacaaggtggggtgtgatggaggtgaagagttctcctctaaggagtatgattggaggttacccatcggtggcaatcaccatcggagctttttgtcaagcaccgtcgacacccctgggtggaagccatgtctatactcccaaagcggagtgaccacccatcttggtagcgacgacatgcaagagtactcttctcgaccacctcagatagaccaaagtgacctaaccaacaactgcagtgcacgacagatctacttgaccttcccgcctgattccattttTagcaaagaggacgtctgcaactactttagcatgtatgggatggtgcaagatgtgcgtatcccataccaggagaagtgcatgtttggtttcgtcaccttcgcctaccaaaagacagtgaagctaattcttgccaagggcaacccacattacatctgtgatgcacgtgttcttgtcaagccatacaaggagaaggacaaggtccccaacaagttcaggcatcaaagtgactcttctagctacatgaatcacaatagattgctttattctagggggccctttggcctgcgacgacaccaaatagggccgagaattttgtatagggacattgctagtcatgaggcatcttttaggatgaagcaagatgaacaacaacatgcgaccgagctgcaacgttgttgcttaatgaggcttccgcttctcaatcttcaggattggggccatcatctcagctctcccatgggttcacatgtgcttctaggacaagttgataacaaatataatattaatgagaatgacaatcccactcatttggaggatgtcacatttcgagacaataagctgaagaatgagtttgctatgagggaaattgcctctactgcaatctccacagcagccaagcgcacggtcatctctacggaagaggggaagagagaatatggtcccaaggcagcaacacctaatgatgcttgtggattcctggaaagtggaatggagtacaatttgcctcatagccccttctcatctcccaccaaggcttccaatgttgcagcaacagctcacactagtaacatcagcagcagtagtagccctcataaggtggcctcatctctattcctcccaacatgcacccttgagctgccccctacaactcatgcttccttcaagcgccaagggaaagcattaacagatcatacataa
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| Protein seq | MGAYEATKVVFARLQALEPNLAPNIISMLLTKDNNEMDMIRLACGPDNLLQSIIAKVRTDLTNKPSPPMASWGFPSDIGEEASFSVDKVGCDGGEEFSSKEYDWRLPIGGNHHRSFLSSTVDTPGWKPCLYSQSGVTTHLGSDDMQEYSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKCMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNKFRHQSDSSSYMNHNRLLYSRGPFGLRRHQIGPRILYRDIASHEASFRMKQDEQQHATELQRCCLMRLPLLNLQDWGHHLSSPMGSHVLLGQVDNKYNINENDNPTHLEDVTFRDNKLKNEFAMREIASTAISTAAKRTVISTEEGKREYGPKAATPNDACGFLESGMEYNLPHSPFSSPTKASNVAATAHTSNISSSSSPHKVASSLFLPTCTLELPPTTHASFKRQGKALTDHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.018090 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0123300 | RBH | 0.705199 | 0.276916 | 2.024721 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02970 | RBH | 0.415333 | 0.173600 | 0.699200 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0123300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001490 | RBH | 0.264249 | 0.0 | 0.276155 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001710 | RBH | 0.045207 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001720 | RBH | 0.336218 | 0.0 | 0.830593 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001520 | RBH | 0.098841 | 0.005314 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001650 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0019600 | RBH | 0.7498325 | 0.350319 | 0.3731105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001640 | RBH | 0.086167 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0021500 | RBH | 0.2853455 | 0.4263645 | 0.472528 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001690 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001670 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001640 | SBH | 0.275688 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001610 | RBH | 0.160520 | 0.331138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001540 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001700 | RBH | 0.861140 | 0.0 | 0.000000 |
