Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0001040 | OGI:04051030 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:715649-719280 | ||||||||
| Gene Symbol | WRKY46, OsWRKY46, WRKY91, OsWRKY91, WRKY97, OsWRKY97 | ||||||||||
| DNA seq | actgtcagatttttccttaattttatactagtactccgtattatttaacagattctgctacattagcctttttctgtatcacgtactccttcctactagatagagaaatgccaattcagttctttacatcattcaagcAaaaaaatctggcttgaatctacatgcaaagaagaaaacaacataatgccactagtatatggaatctcatcagcacaacatccccacctcccaatataaaaccctatctggCACcatccaagaggctcctcagaatgtatatgcatctccttcactttccatcaaaatcatcacaagaaatggaaatactcgatgcatcttgactgaccgatcggcagcaatgtcctcgacagagcaccggttgtactgggcgaagcacttgcttccgcataatcgtccgcctccatcttaaccggagcatagcttgtagatgacgatgtgtctgcccaatgaaactggcgactgtaggtgttcatgtcaggttgctggttggaactgtacggctgcatgctcggcgacaacaatgaagctgatggtgacaagaatgtgggcagttcaccggttttgccatgtgaattgaagcagatcgaaatggctttcctcgactgcacagtagaatcaggagtgctgcctacgatcTttgggctgctgttgcaggtgtggtggttgaagtaagtgactgagaacaatggtggatcattagtgtccttctgctggacttgcttcgtagcagggcacttcatgtcattcttgtaggtgcatctgtaatagaacctgcaaatagaaagccatgatctcaaattctcaataccttcttgctggaaatcctaagagcaaattactgcagataagggattggttttttttccaggtagcatttagggagtacaattgcagttgccttcaagagcagaaattttgattcTGtgtgctgctgttatacaccgttttagcttatctttatttagaatgatggtgactgcactgaaactactgtccattccagcatacagtggaatttccctttttttttctctcttttgggatcaccttccgatctgccgcttggcaatgtgttattaccatacttttcagaatgccatcagaaaacttagttgatctgtttacttacaaaaattacgtggtatatttttcagaatgtcactaatttattttggaacttcatttacttggtgacaccaaagtcagcactatcctgcattcctactatattccaagttgaaaggttgaacaacacattcttcaactcatcttcacgcaatctcacctttagggtaccaacttgagttattcttctttaccagttcttgaaccgtggtactttacagtttgcatatatatgtgcagtgtcattcagtgtaacaaaccttaatttaagacaacaggaaaaacatttGtattcttaaatcatgtctcttttgcacttttctccacgaacatttactctacctaaattaggcggagtggttgccaacacatacttttcagacctttcataaattaccttttgcaaaaagaaatgactgcaactattagcaagctcttgtgagcaaacaagatatgtagggtcttccctcaggctgcatgccaatcaaactccaaggaagtaaaaaagagtttgtggagactgtcggcatgcacgctaatatttgcaaacAAaatgtgcttgaaaaacacaagtagtatatattctggtaggaaaacattagatatcaaacaagtcgctgatgacaggcaatAaaagagaaccacttgcataTtttttatttatatggtctcacttttcaaatttttatatgtcttgttgagttgtcgattgccaaagagattgctgctatgaaggttcttttCccatggtcaatttactagtttttaatcttgctcactaaaggcatctgccgacaggctcgacacgtgccccttgcaattctaccaagagatgactagagacagccatgtagcctaatttgtgtccacagaacacaagagtgttctttgcaagaacccaaattaaagcattgaccaaaccatctgctgatatacaaacactggacacagtattagccatcgacatgacctgggttatagtaaaccaccagctgatcaaacaaagactagagattggccccaaaaatgagacttttgctatatccataaatatttaaggaaatgtgaacatgtgagttcatttacatgaacagatgtagtctttgctagaTttcttttccggtttcaactgaaattagctcaagatgtaaacactaagcacgcatctggagcctgttaacagatttgttggaccaccctaaCccactttggttatggaagaaattgatgagtaggagctattctaccaaactaccgaaaaggtgcccctcgcaattctaccaagagatgactagcggacaaccatgcagcctaatttgtgtccacagaacacaagaatgttcatttcaagaacccaaattaatgcattgaccaaaccatctgctgatatacaatggacacaatactaggcatcgacatgatttgggttatagtAaaccacaatctgcacaaacaaagactatagtttggccccataaataagactcctgctatacccataaatatttaagaaatgtgaacatgagagcgcagttactgagttacatgagcagaactagtccctgctagatttgttctccggtttcaactgaaattcgctctcaagatgtaaacactaattaagcacacatatggagcctgttaacagctctgtttggaccacactaacacacttccattctggaaggtattggtgagtaggagctgttctaccagaactaccgaaaaggccaaaacgaaagaaaccaagatggcatgaagaaaattttcctgccaaaattcaaaGgggaacttgaaattccccaaggtttcagatcaccacccacagttcactcacctaatgcaactactctgcttgtccttaaaattagctttggtgaatctagtAaaatctgaaattaaccgttctgcagattctaaccatggaagacagtaaaaaacatgacctttgagggaaagaaaaatagatgcatgcatgaagtctagtaattttggggcaaagaaatgaagtgagaaaaaagaaatggagggcggaaggtaccttgggaagttggaattggagagtttcttctcgccgtacttcctccactggtggccgtcgtcgtacggcgcgtaggtgtcggtcgtccatgtccgctcctccttcctggggctaccatatcagaatcaatggcacatcacagaacccaccacaaattgaagaaaggagagaaacagatcaagaactacacatacacatggggaggctctttgctgcaagcaagaaatcgatggaggagaaaagaatggtagccatagatatgtacctgaccctttgctgctgcggcgtcctggccctgctggatccaagatcgctggggtaggatggaacagagtcgagtgccatctcggtctcggagaagaagcggaggattttgtgggggccgagtggtctcgcttggtagggaagaGggagaggaagaggaagaaaggaaggcgtgggaatt
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| CDS seq | atggcactcgactctgttccatcctaccccagcgatcttggatccagcagggccaggacgccgcagcagcaaagggtcagccccaggaaggaggagcggacatggacgaccgacacctacgcgccgtacgacgacggccaccagtggaggaagtacggcgagaagaaactctccaattccaacttcccaaggttctattacagatgcacctacaagaatgacatgaagtgccctgctacgaagcaagtccagcagaaggacactaatgatccaccattgttctcagtcacttacttcaaccaccacacctgcaacagcagcccaaAgatcgtaggcagcactcctgattctactgtgcagtcgaggaaagccatttcgatctgcttcaattcacatggcaaaaccggtgaactgcccacattcttgtcaccatcagcttcattgttgtcgccgagcatgcagccgtacagttccaaccagcaacctgacatgaacacctacagtcgccagtttcattgggcagacacatcgtcatctacaagctatgctccggttaagatggaggcggacgattatgcggaagcaagtgcttcgcccagtacaaccggtgctctgtcgaggacattgctgccgatcggtcagtcaagatgcatcgagtatttccatttcttgtga
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| Protein seq | MALDSVPSYPSDLGSSRARTPQQQRVSPRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSPKIVGSTPDSTVQSRKAISICFNSHGKTGELPTFLSPSASLLSPSMQPYSSNQQPDMNTYSRQFHWADTSSSTSYAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL |
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| Function | WRKY transcription factor 55 [UniProtKB/Swiss-Prot:Q9SHB5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0001040 | OsLima_12g0001040.02 | Chr12 | 715649 | 719261 | - | NAM | ||
| CDS seq | atggcactcgactctgttccatcctaccccagcgatcttggatccagcagggccaggacgccgcagcagcaaagggtcagccccaggaaggaggagcggacatggacgaccgacacctacgcgccgtacgacgacggccaccagtggaggaagtacggcgagaagaaactctccaattccaacttcccaaggttctattacagatgcacctacaagaatgacatgaagtgccctgctacgaagcaagtccagcagaaggacactaatgatccaccattgttctcagtcacttacttcaaccaccacacctgcaacagcagcccaaAgatcgtaggcagcactcctgattctactgtgcagtcgaggaaagccatttcgatctgcttcaattcacatggcaaaaccggtgaactgcccacattcttgtcaccatcagcttcattgttgtcgccgagcatgcagccgtacagttccaaccagcaacctgacatgaacacctacagtcgccagtttcattgggcagacacatcgtcatctacaagctatgctccggttaagatggaggcggacgattatgcggaagcaagtgcttcgcccagtacaaccggtgctctgtcgaggacattgctgccgatcggtcagtcaagatgcatcgagtatttccatttcttgtga
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| Protein seq | MALDSVPSYPSDLGSSRARTPQQQRVSPRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSPKIVGSTPDSTVQSRKAISICFNSHGKTGELPTFLSPSASLLSPSMQPYSSNQQPDMNTYSRQFHWADTSSSTSYAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0001040 | OsLima_12g0001040.01 | Chr12 | 715649 | 719280 | - | NAM | ||
| CDS seq | atggcactcgactctgttccatcctaccccagcgatcttggatccagcagggccaggacgccgcagcagcaaagggtcaggaaggaggagcggacatggacgaccgacacctacgcgccgtacgacgacggccaccagtggaggaagtacggcgagaagaaactctccaattccaacttcccaaggttctattacagatgcacctacaagaatgacatgaagtgccctgctacgaagcaagtccagcagaaggacactaatgatccaccattgttctcagtcacttacttcaaccaccacacctgcaacagcagcccaaAgatcgtaggcagcactcctgattctactgtgcagtcgaggaaagccatttcgatctgcttcaattcacatggcaaaaccggtgaactgcccacattcttgtcaccatcagcttcattgttgtcgccgagcatgcagccgtacagttccaaccagcaacctgacatgaacacctacagtcgccagtttcattgggcagacacatcgtcatctacaagctatgctccggttaagatggaggcggacgattatgcggaagcaagtgcttcgcccagtacaaccggtgctctgtcgaggacattgctgccgatcggtcagtcaagatgcatcgagtatttccatttcttgtga
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| Protein seq | MALDSVPSYPSDLGSSRARTPQQQRVRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSPKIVGSTPDSTVQSRKAISICFNSHGKTGELPTFLSPSASLLSPSMQPYSSNQQPDMNTYSRQFHWADTSSSTSYAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 718940 | 719101 | - | OsLima_12g0001040.02 | OsLima_12g0001040.02,OsLima_12g0001040.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.153333 | 0.357604 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0116400 | RBH | 0.991455 | 1.986168 | 4.050887 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02420 | RBH | 0.621202 | 1.242810 | 0.990025 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0116400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001020 | RBH | 0.0 | 23.072792 | 0.809202 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001230 | RBH | 0.000000 | 1.471330 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001240 | RBH | 0.0 | 15.274124 | 2.429416 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001060 | RBH | 0.000000 | 0.304912 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001200 | SBH | 2.115523 | 8.075535 | 5.129489 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0015200 | SBH | 1.9657465 | 26.9683835 | 14.4455195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001200 | SBH | 0.000000 | 0.750222 | 0.230580 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0015400 | RBH | 3.5963425 | 10.5584675 | 6.515274 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001080 | RBH | 0.000000 | 0.093686 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001180 | SBH | 0.511882 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001200 | SBH | 4.254130 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001160 | RBH | 0.256483 | 0.0 | 0.173246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001230 | SBH | 0.0 | 3.891492 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001170 | SBH | 0.407975 | 0.834360 | 0.665747 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001170 | SBH | 0.927312 | 11.093688 | 3.304132 |
