Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0024210 | OGI:11081220 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:30144310-30148588 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagaagccacccggtggggtcaagccggcttggtaagtgagtgttgcagccaagatttcaacaagcagcaacaactcacgcttcttctccaactgatgctcctttatcttgtcttcctcaccctgcttgtccgacttcttttctagtgtggagaagagaatgtgaatcaccacatagataaggacaccaccagccaaggcaactgtgtaaatggaagtgcttgtggccctgcaacttccgacagcgtacgcgcctatgaggcaaaacaaatcaagtatcatggctgcctccagtacatggcttctaactagaaattcattctgcaacatcaccatgatgactagggatgccacaaaagccaccgagttaaaatagaagaagaccttgtaccgcctagggtgcgttgtcaggagtattgggtctcctacactgtggctagccccattgtctgcccagacgcctccaggtggatctattcctgcttggtaagcaacgatcgccgcaagaatggcaaggagctgaattaattcacaaggcttgtctagatcattgttgtattgtttacttcccctgtacaattaaatagatagttcaattgcagtctagaataattcttttggtactcgaaattgatgatgtggaattaagaatttctagcactcaaaaaatgtgtacaaaaatgcaagaaattctcaccgaatcaatCccccccccCGTCCCCCATGTCATCATGATTGAAATGATAGTTAACAATGTGAAACAAATTAATTTTTGTTCGGTTAGCCCAATATGTGGCCTTAAATGGCTCCAATCAGTAATCACTACATCTCCCTAGGTCTTGATTGAGGGGCACGAAGGTCTTTTCCTTCCTCTTAATTGATATGTACTCAAACTATTAGAAATGATACAGCCCCCCTAGTACTGGTCCTTTCTATGCCCATGCCAGCGGCATGGATGATCGTAGAGCTATCTTCATGGAAGTAGAAAGCATGAATAGAAATATTTTTTTTCAATGATGATAAGCAGCGGTGGAGCAAGCTAGAATTTCCTCATGCCCGGGTCGAGGCTaaaaacaagggaataaaattggcaggcgactgatagcattttaatgatgtggagcacaagtagttgggcattatgaacacatcaaggtgtgaagagcttgagctgatgagcagtccggattggaagcaaggtcattgggtgcagtggcatggactagcaggaaaaaattataagattatagccctaagagactatgattaggaaaaagaaaaaaaagcactccgctgcaagttggcgactccaacccatagactcgaggacaagactaacgctatgcgtgctcggttgctatcagcctttcgaagggagaacaaacatgtcgcctagatcaatggttctcgatgagcatgtgctttgtggatctatgatcatgttcaagcaaaactgatacaataaagtatagatgttaatagtgaaatagttctagtgataggctcattttgtaaggctcatgtctacatagttttgggagcaagacaccattgagtccatggaccttttttttcttttaccgtaccagtttctttacctatcaatggttctcagtgagcatgtgctcgtttattatagttttacagttttcaaatatttctaagtaaaatcatttcctacaatacacaatataaatctatgatcgttttccatatatctttacataaggaaaaaagttcaaatacccccctaaactttggatggaaatccgtctagcaccttgaactttaaaatcaaacacccattctcctaaactttgtaataccatgtatattactctctaaggtggttttggatggtgtttttgcatatttgaaggcttaaacgagtggttttgaataactaatatacatatttaaatatgattagttagtaggacatcaatttatattatatagtggtgccatattattattatgttgatactcattttgtaagtgagattgaataaagggtacaaattaaagaagggatatttaagtgaagatcttagcatgtatatctaatgtatatgtcacgtgatcaaactcattcaacttatatacaaattagattaaaaccatcttatcgggttatataaatagtactataaagttcagagagttgtatgtccgttttcgaagttcagggtgctagatagacttttactactagagaactcatcttttatccaatgccccaaacatacaaatacctcggatggattaagaagcgttactaaatctctttagtactggttttaaaagcccaagtccctagaaacatttttagtatcggttggtgttatcaaccggtattaaaaatacatctgtagtaccggtgttagcaccaatcgagattaatgctgatggatctttagtcccgttgatattatcaaccggtactaaAGatgtatttttagtactagtaggtaacaccaacccatattcaagatatttttactaaagatgcctcctgagttagttcaaaaggaaatcatctctattcaagtcaaatgtgtaaggtaggtgggatcgtaacacgcgtgagggctgaggtgagatatcttgagtttgattcccacatcccacatattttttttttgacttggtatgcattgttagtaccggttctttagtcttgatttttttttgtcacggttgctaactggaattaatgggtatacatctttagtaccggttcagatcgagatctttagtctcgattttttgtcacggttgctataatcgggattaatggcggttttcaactgatattaaaggtgatttctctcctggtgtttcaatcaaagtttagggtgatatttggactctctcctgcatataaatgtactacatgaagcaaggaaaaatgtagggtatgtatgtttttgacctaatgtggttttatatatcctacactttgaccattgtattttatattatattgctcatgatcatgaaattgacatcattggaaaatgtttcgaaatatgaatctaatcataccataatgatttttattaaggacaaagaagttttgctttcagacttttgttaaattatttgaatgcaattcaggtggggagcgcgcggttgtgactttttttaaaaaaaagtaacaagaaaagataaaaaaaaataaaaaaaggctaggcatggcattagaaatgcatgatgaagatgaatactgcgtacctggtaccaaaagggagactgatggcattagatcctacaagaaaccactggagaaagatgcagacaagaaccgggacaatcaggccaagaacatagccggtgtgcctgctgtccctgcagctcccggcggcgtaggcgccgccgagtcccaagatcgccgtgacggtgagcccgtacagcgggaacttgatgcgcttgaggtcaagcttctcgtagtacacgttgaacgtgatggcgagcagggacgcgatgaaggagatggcgttggagaagaagaagaacttgtaccggattggatggaggcccggcagcaccgggtcgccggcggcctcggtgctccgccagaagccgccgggtgggttgagcccagctacataggcgtcggtcgccacgaagatggcgatcaacatcaggatcccgacggcggcggcggtgtcgttttcgccgtgagggttgggacgatgaagacgatgacataggcggcggtggcggagacgagcgcggcggcgccgatggtggtgaacttgtcatggctggtcccggcggcgtaggcgcccatgagggcgagcaggtcgaccaccatcaccgcccgggtgagcgtgagcagcttggtcccctggtgctggtggtggccggcccttgtgcaggaggaGgaagaggaggctgaccaccagcgacgccgcgaaggagatggcgttgaaccagtagaagacgatgtagcgccagtagttggtgtcctgtaggatggcgtcgccggccagctgccaccggccgccgccgccgccgtcctccagccacgagccacccggcgggttcagccccgccgcgtaggtcaccgtcgccaccagggtggccagcagcaccaggtacttcttcagctggcactccattggcgacgacgacgacggctgcttgtcgtcgctgctgccgctggaagaagtgaggttttgctggctacttccaccggccaccgccggcgccgccattgatctgctactgttgatcgggtgatcgatcgaggtgaatctttgagcaataatac
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| CDS seq | atgttgatcgccatcttcgtggcgaccgacgcctatgtagctgggctcaacccacccggcggcttctggcggagcaccgaggccgccggcgacccggtgctgccgggcctccatccaatccggtacaagttcttcttcttctccaacgccatctccttcatcgcgtccctgctcgccatcacgttcaacgtgtactacgagaagcttgacctcaagcgcatcaagttcccgctgtacgggctcaccgtcacggcgatcttgggactcggcggcgcctacgccgccgggagctgcagggacagcaggcacaccggctatgttcttggcctgattgtcccggttcttgtctgcatctttctccagtggtttcttgtaggatctaatgccatcagtctcccttttggtaccaggggaagtaaacaatacaacaatgatctagacaagccttgtgaattaattcagctccttgccattcttgcggcgatcgttgcttaccaagcaggaatagatccacctggaggcgtctgggcagacaatggggctagccacagtgtaggagacccaatactcctgacaacgcaccctaggcggtacaaggtcttcttctattttaactcggtggcttttgtggcatccctagtcatcatggtgatgttgcagaatgaatttctagttagaagccatgtactggaggcagccatgatacttgatttgttttgcctcataggcgcgtacgctgtcggaagttgcagggccacaagcacttccatttacacagttgccttggctggtggtgtccttatctatgtggtgattcacattctcttctccacactagaaaagaagtcggacaagcagggtgaggaagacaagataaaggagcatcagttggagaagaagcgtgagttgttgctgcttgttgaaatcttggctgcaacactcacttaccaagccggcttgaccccaccgggtggcttctag
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| Protein seq | MLIAIFVATDAYVAGLNPPGGFWRSTEAAGDPVLPGLHPIRYKFFFFSNAISFIASLLAITFNVYYEKLDLKRIKFPLYGLTVTAILGLGGAYAAGSCRDSRHTGYVLGLIVPVLVCIFLQWFLVGSNAISLPFGTRGSKQYNNDLDKPCELIQLLAILAAIVAYQAGIDPPGGVWADNGASHSVGDPILLTTHPRRYKVFFYFNSVAFVASLVIMVMLQNEFLVRSHVLEAAMILDLFCLIGAYAVGSCRATSTSIYTVALAGGVLIYVVIHILFSTLEKKSDKQGEEDKIKEHQLEKKRELLLLVEILAATLTYQAGLTPPGGF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024210 | OsLima_11g0024210.01 | Chr11 | 30144310 | 30148588 | - | NAM | ||
| CDS seq | atgttgatcgccatcttcgtggcgaccgacgcctatgtagctgggctcaacccacccggcggcttctggcggagcaccgaggccgccggcgacccggtgctgccgggcctccatccaatccggtacaagttcttcttcttctccaacgccatctccttcatcgcgtccctgctcgccatcacgttcaacgtgtactacgagaagcttgacctcaagcgcatcaagttcccgctgtacgggctcaccgtcacggcgatcttgggactcggcggcgcctacgccgccgggagctgcagggacagcaggcacaccggctatgttcttggcctgattgtcccggttcttgtctgcatctttctccagtggtttcttgtaggatctaatgccatcagtctcccttttggtaccaggggaagtaaacaatacaacaatgatctagacaagccttgtgaattaattcagctccttgccattcttgcggcgatcgttgcttaccaagcaggaatagatccacctggaggcgtctgggcagacaatggggctagccacagtgtaggagacccaatactcctgacaacgcaccctaggcggtacaaggtcttcttctattttaactcggtggcttttgtggcatccctagtcatcatggtgatgttgcagaatgaatttctagttagaagccatgtactggaggcagccatgatacttgatttgttttgcctcataggcgcgtacgctgtcggaagttgcagggccacaagcacttccatttacacagttgccttggctggtggtgtccttatctatgtggtgattcacattctcttctccacactagaaaagaagtcggacaagcagggtgaggaagacaagataaaggagcatcagttggagaagaagcgtgagttgttgctgcttgttgaaatcttggctgcaacactcacttaccaagccggcttgaccccaccgggtggcttctag
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| Protein seq | MLIAIFVATDAYVAGLNPPGGFWRSTEAAGDPVLPGLHPIRYKFFFFSNAISFIASLLAITFNVYYEKLDLKRIKFPLYGLTVTAILGLGGAYAAGSCRDSRHTGYVLGLIVPVLVCIFLQWFLVGSNAISLPFGTRGSKQYNNDLDKPCELIQLLAILAAIVAYQAGIDPPGGVWADNGASHSVGDPILLTTHPRRYKVFFYFNSVAFVASLVIMVMLQNEFLVRSHVLEAAMILDLFCLIGAYAVGSCRATSTSIYTVALAGGVLIYVVIHILFSTLEKKSDKQGEEDKIKEHQLEKKRELLLLVEILAATLTYQAGLTPPGGF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024210 | OsLima_11g0024210.02 | Chr11 | 30148129 | 30148532 | - | NAM | ||
| CDS seq | atggcggcgccggcggtggccggtggaagtagccagcaaaacctcacttcttccagcggcagcagcgacgacaagcagccgtcgtcgtcgtcgccaatggagtgccagctgaagaagtacctggtgctgctggccaccctggtggcgacggtgacctacgcggcggggctgaacccgccgggtggctcgtggctggaggacggcggcggcggcggccggtggcagctggccggcgacgccatcctacaggacaccaactactggcgctacatcgtcttctactggttcaacgccatctccttcgcggcgtcgctggtgcctcctcttcCtcctcctgcacaagggccggccaccaccagcaccaggggaccaagctgctcacgctcacccgggcggtga
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| Protein seq | MAAPAVAGGSSQQNLTSSSGSSDDKQPSSSSPMECQLKKYLVLLATLVATVTYAAGLNPPGGSWLEDGGGGGRWQLAGDAILQDTNYWRYIVFYWFNAISFAASLVPPLPPPAQGPATTSTRGPSCSRSPGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0682000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0682000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024180 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024130 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023680 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0176900 | SBH | 4.1231745 | 0.305001 | 0.0181225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024360 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172500 | SBH | 5.147779 | 0.1347395 | 0.460024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012140 | SBH | 0.098548 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023890 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012100 | SBH | 0.185697 | 0.682975 | 0.635394 |
