Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0024070 | OGI:11080990 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29880755-29883786 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtatggtgcgaggtgtagcagctgtccgctgaggcaccaaaacaagcttggtggccatggaaagctgcatatccacagtctacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggtacttatcttagatgatgacgagcgcaagcagtggtcaggtgcttgcattgagagcttttacccaccattaattggtgctagcttcaaagactggaaatcacacactatcacggttcgagatacccagattggatggtcggagttcagaaaggcccaaagtgttgcattggatgcaacagattctgagacatgctcctgaacttttttgcgttttctgttcacctgtgtaacaccccgattttcgtttattcatagaaaactatttttagttAaaaattctatattcaaaaattttgttctttgtgtgtagaaagtatctagtgccaagatctcatatgaaaacaatccttgtagcccaaaaatctcgttcaaaaatcttctctaaaataaaacctcggcatcgaattctatcttaagcccttctccataaattctcccgaatttctaatatatcaaactccactcaaataaggaaatctcattttcacccttgtaacgtgtcaagattgtccaatattaaattaggtccaaatatctcctcctttcttatcttttcttttcccaaaatttatccaaataatttgaaataccaaacctttccaaatattccttgaaacccgaaaatttctgagaaagtccaaaccctaggtatagattcaaatgtccttactaaatcctcctttgaaatccttcgttctcggtcccttttaaactattcaaatttcaatgactaaagctcatcaaatcattaaaattcttctgttatcccattactcaaatctactcaaaataccatttaaaaaccataaaatctcatggaactctcccttgaaaattaaaaaaattaatctgaacaattgcctaaatttagttcaagaaatcaaacatcattttaagaatttatgaaattccagtaaatttatctcttctaaattcctcctatactttgtttccttcggtttacacaaaattccttcaaaattgttccaaagaatagctcctaaattttgcaaataaattattccctaaattatccaaaattctttgagatcaaaaaacaaatatgaaatttgaatccaattatccattcaaataatccaaatactcctttcaaataaatctctcaaaattatcaaaagttactatgcttttGggccgctctccttcctgcttttcccagccggcccagtcagtctcactccctcccctttccccttccgacctgggccacggccaccgaggctcagccagcagcccagccagccccaaatcgccaagtcactttgagccccaaatcgaagattgtcctcatcttcaatcacttccaacaagactgtccctgtctcttcgtatacttcctatttctaactgtgacagatggaaccactgcaggataacctggaggacgacctccggtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgttcggctctcttaagaaattgaaggtaacggccggatgccccgaaattagttcgcttctagtaatgccccattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctccaaaacatctGgacatcaatactatcaaaagatcagccatgttccccacaaaataatcgaatatggtaaggctttaaatcctctttgattgctgcgtaccaatattcccctgttggttaagagcaagtttaatagtggagctaactatttgctattagcctatataagagctaatatgtgtaataggtcaactttctctcCTctctttttcatactatgaatttaacgtaaatattttgaagcatgtgtagagttaacttttgcatgagagaaaatactaattaTttttttgtctttatctttcatataagattatagttgaattatagcacactattatccttgctctaatgcatttgttatgtgggcctgtcaatAGactcagacgaggacgaagaaatggaagacaatcaatgaagatctttatccattggaagacggcgaagggagtgctctgcgaggcgtcgatccagaccggttgtggattgtgccaaaaaaaaggtaatcttgtcccaaaaaaaaattgtgctattttactttgttcatgttgttgagagtcatgtgtgagcccacgacctgtgtgagcgccatgcgagtacgtacctaatttgtaataatgtggagtcggtgtgtgaaggtgcaagatgcatgtctgagctagatcatgagatggcacgatgtaaccggaattcatgtggtgcaagccttgtatgtgcctagctataatttgtatgttttccttaatctgtatacatggataaataaaaccgaagagaaaaacaacgaaaacgctacggttgttgagcagcacaaaaccttgtttgtctttccaattagctagtgttaatttgtttcctctcaatcagcatgctacgataaattcgtgtgaggtcgtgtgcaggttggagcttaattggaaatgtaccgcgcgaggtgcagcggctgtcagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatccacagtcaacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctggatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaggtgcttgcattgagagcttttgcccaCcattggtgctagcttcaaagactggaaatcacacactatcacggttcgaggtacctagattggatggtcggagttcagaaaggcctaaagtacctgcattggatgcaacagattctgggacctgcacctga
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| CDS seq | atgtatggtgcgaggtgtagcagctgtccgctgaggcaccaaaacaagcttggtggccatggaaagctgcatatccacagtctacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggtacttatcttagatgatgacgagcgcaagcagtggtcaggtgcttgcattgagagcttttacccaccattaattggtgctagcttcaaagactggaaatcacacactatcacgatggaaccactgcaggataacctggaggacgacctccggtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgttcggctctcttaagaaattgaagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatccacagtcaacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctggatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaggtgcttgcattgagagcttttgcccaCcattggtgctagcttcaaagactggaaatcacacactatcacggttcgaggtacctagattggatggtcggagttcagaaaggcctaaagtacctgcattggatgcaacagattctgggacctgcacctga
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| Protein seq | MYGARCSSCPLRHQNKLGGHGKLHIHSLQNGESKEEALKSKLDAKECLDQVLVLILDDDERKQWSGACIESFYPPLIGASFKDWKSHTITMEPLQDNLEDDLRSLLELEIEDCRDIESLPAQLFGSLKKLKLRHQNKLCGHGKLRIHSQQNGESKEEALESKLDAKECLDQELVLVLDDDERKQWSGACIESFCPPLVLASKTGNHTLSRFEVPRLDGRSSERPKVPALDATDSGTCT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0024070 | OsLima_11g0024070.01 | Chr11 | 29880755 | 29883786 | + | NAM | ||
| CDS seq | atgtatggtgcgaggtgtagcagctgtccgctgaggcaccaaaacaagcttggtggccatggaaagctgcatatccacagtctacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggtacttatcttagatgatgacgagcgcaagcagtggtcaggtgcttgcattgagagcttttacccaccattaattggtgctagcttcaaagactggaaatcacacactatcacgatggaaccactgcaggataacctggaggacgacctccggtcgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagcacagctgttcggctctcttaagaaattgaagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatccacagtcaacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctggatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaggtgcttgcattgagagcttttgcccaCcattggtgctagcttcaaagactggaaatcacacactatcacggttcgaggtacctagattggatggtcggagttcagaaaggcctaaagtacctgcattggatgcaacagattctgggacctgcacctga
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| Protein seq | MYGARCSSCPLRHQNKLGGHGKLHIHSLQNGESKEEALKSKLDAKECLDQVLVLILDDDERKQWSGACIESFYPPLIGASFKDWKSHTITMEPLQDNLEDDLRSLLELEIEDCRDIESLPAQLFGSLKKLKLRHQNKLCGHGKLRIHSQQNGESKEEALESKLDAKECLDQELVLVLDDDERKQWSGACIESFCPPLVLASKTGNHTLSRFEVPRLDGRSSERPKVPALDATDSGTCT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023990 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023330 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0432600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023620 | SBH | 0.393959 | 0.167419 | 0.935478 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024050 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022960 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022690 | SBH | 0.796213 | 0.0 | 0.076279 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023370 | SBH | 1.251961 | 12.032497 | 1.134784 |
