Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023520 | OGI:11076970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29313551-29316996 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgctatggaatggcttgggtcaggtggccaacattgcgcagcttgccggggtagatgcatatgggctcatcaagatgatcgtggaggctgcgcagacagctaaaaggaaccaggagacctgccagaagctagcacggcatgtgaagatgatcggcgacctgctgcagcgactccaaagcacagagcttatgcagcatcaagaaacgaggaacccggtggagcagctggaggagacgctccgacacacctacatgctcatcttgtcctgtcaggacagcagctacctgcacagctgcttcatgggagggaagcaggctcaccagctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagcttcgttaacacgacccgtacctgggagcggcttctgagaagagctcaaccttcttgcactgaggtacatggtttgtctttcttttctctccttcaagcaagtcagtggaaaggggattaaaatgtataagttcgatgatgcatgttaatcaaagattccatttaataggagacatcctcagattagttatgatgccactactgagaatgagaagcatggaaagaactctggttctagagatgcagtgaaatgtgatagttcctcttaatgtcaaagttcataccagctccttgctggaaaatgtttcttatcatgacagttccttgctctaatttgttttgattatcttcttaattatctattcaagagaaactttgtcgcggggatcttgttcttatctttattaatttttggttactctcacaggatactgcagatgagttacaaaaagtacatcattcagatcatagaattaggtacgttatatcaatactgcacccattttatgccaagctcatgttgcattcgattttcctgtgcttttaagacatcatacaccaactttttttccctcactatttcattcaagatgtagatgaatgatgaacaaaatactcacagcgtgaaaaaagaactattgggcaacatgctctcctcgaattatcgccgatcagggattttgtgatgattactttaattatatcatccttatggcttatgttcctttgcagaacttgccatagtactactgcggttgatccaaacctacttgtgaattatgatatagtaataaggtgttcttgctaatgtttacaaggaaccatgtacaggactatgcacacaaatacattaagctgattgagttacattggcaatttatattcaggtaccaacatagatgtcatggtggatgcactagttactctagggtgttacaaatgaatggcagcatctttatatccatttataggtgtatcattttgacatattaatttggtactatatgatcagattcaacacagaaattctcaacgcgactgaatttggtgatcagagtgtaactcaatgtccagaagtttttgaggaaaaacgaagtgaacaagcatcaagtatgtcaattcgcaaaacaattttgttttatttttgtctattagtattgacaagatatagttttttaatcaatcagtcagaagcctgaacctggatcaactagttgttaatgatattggaaaaggagtagtgttgactttttcagggagatccttaattggacaaggtggatttgggcctgtttacaaggtactccgtagttctcttcaaaagtaaaccttaggagttaggatgaagaaaatcctgaacttttgaagaaatagtaatattagaattctaaatttgcagttcttacactcgctggatcaaatgaaaaatttttcagccaataattttaatctcacccacataactaatctttctataataTtttttttccataacagcagtacataaataatgcggataggatattttgaaaaatttcagctcctcccatgatcttgctttagaacatgttgtcatgtcagcttcttgtaacatgtataacatccaggaatgctttttatggcattatctagaaaatctatgaatgctttgaatatgcgcatatctgaataTtttgatttacaatgcttagatgtgctttattaatctgaatttaaactttctcagggaaaacttcccaatggacttgagattgctgtcaaaaggcatgatacttcttcacatcaaggtgaagaagagttcatggctgagattgacgtcataccaaaacttcgagaaaaaATataattgagctgattgggttttgtgttcaaggcaaagaatgtattcttgtctatgaatacattccaaatggaagtttggcttctaccattagcggcaagttttctattttgactaagaccaatgcctccaTttttttttctctaaatgatatctggtatttttgtagatgaagcaaaaaggatattgctaaattggtctaagcgccttaaaataattgaaggaatctcagatggtcttctttacctacacaaccattctcccaagtgcattgtccatagggacataaaagcaagtaatatcctcttagattatgaaatgaatgctaagatttctgattttggtctggccataaaattagctccgaaagcaactacagaggtgcttgttcgtggcacatggtagatactctcccagtctccctatactgtaaactagttagagatgcaactctcatctttcccttgataagtgtagctacaggtgcactgctgtgacgatctactgtcatctttcaggggttatgccgatcctgaatatgttgctactggagtaatctcggagaaaaccgacgtttatagctttggcattgtactgcttgagataataagtggaaagttgtgtgtatctggatataatgtgaagagcagatctcgacgaacaatatttcctgaatttgtaagtattccataactgcacctctatttttatcaatgttctaagggtgaatggtggtatcttcttattagaaaatgtgaaaatggtactactctctggtagtgtggttgataaattccaacctgttcatgcaaactttcctcagttcctgcctgaactgccctttttttatgtttctgtaagattaagatattttaaattttcatatgttgctctttaatattctgataatcttttcaggcactgaataacagaaaaaagttgcacaagcttattgatccatcattaggtgctaagaaacatgagcgagctcagattatgcaatgtcttagggtggcgatgttgtgcgttcgggatcgcgctgaacatcggcctaccatgtctgaagttgttactatgcttcctagcatcaagacaccgaaagacagaaaggtacaagcactgtttctgtccaagttatgcttggattgcacatgaaaatactgaatggcatttgctctctttctgtttgttaattaggacgctctatttctttgcagacctaa
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| CDS seq | atggcgctatggaatggcttgggtcaggtggccaacattgcgcagcttgccggggtagatgcatatgggctcatcaagatgatcgtggaggctgcgcagacagctaaaaggaaccaggagacctgccagaagctagcacggcatgtgaagatgatcggcgacctgctgcagcgactccaaagcacagagcttatgcagcatcaagaaacgaggaacccggtggagcagctggaggagacgctccgacacacctacatgctcatcttgtcctgtcaggacagcagctacctgcacagctgcttcatgggagggaagcaggctcaccagctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagcttcgttaacacgacccgtacctgggagcggcttctgagaagagctcaaccttcttgcactgaggatactgcagatgagttacaaaaagtacatcattcagatcatagaattagattcaacacagaaattctcaacgcgactgaatttggtgatcagagtgtaactcaatgtccagaagtttttgaggaaaaacgaagtgaacaagcatcaatcagaagcctgaacctggatcaactagttggaaaacttcccaatggacttgagattgctgtcaaaaggcatgatacttcttcacatcaaggtgaagaagagttcatggctgagattgacgcaaagaatgtattcttgtctatgaatacattccaaatggaagtttggcttctaccattagcggcaaatgaagcaaaaaggatattgctaaattggtctaagcgccttaaaataattgaaggaatctcagatggtcttctttacctacacaaccattctcccaagtgcattgtccatagggacataaaagcaagtaatatcctcttagattatgaaatgaatgctaagatttctgattttggtctggccataaaattagctccgaaagcaactacagaggcactgaataacagaaaaaagttgcacaagcttattgatccatcattaggtgctaagaaacatgagcgagctcagattatgcaatgtcttagggtggcgatgttgtgcgttcgggatcgcgctgaacatcggcctaccatgtctgaagttgttactatgcttcctagcatcaagacaccgaaagacagaaagacctaa
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| Protein seq | MALWNGLGQVANIAQLAGVDAYGLIKMIVEAAQTAKRNQETCQKLARHVKMIGDLLQRLQSTELMQHQETRNPVEQLEETLRHTYMLILSCQDSSYLHSCFMGGKQAHQLREVQSDITFYLQLFPLVSFVNTTRTWERLLRRAQPSCTEDTADELQKVHHSDHRIRFNTEILNATEFGDQSVTQCPEVFEEKRSEQASIRSLNLDQLVGKLPNGLEIAVKRHDTSSHQGEEEFMAEIDAKNVFLSMNTFQMEVWLLPLAANEAKRILLNWSKRLKIIEGISDGLLYLHNHSPKCIVHRDIKASNILLDYEMNAKISDFGLAIKLAPKATTEALNNRKKLHKLIDPSLGAKKHERAQIMQCLRVAMLCVRDRAEHRPTMSEVVTMLPSIKTPKDRKT |
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| Function | Cell number regulator 13 [UniProtKB/Swiss-Prot:B6SJQ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023520 | OsLima_11g0023520.01 | Chr11 | 29313551 | 29316996 | + | NAM | ||
| CDS seq | atggcgctatggaatggcttgggtcaggtggccaacattgcgcagcttgccggggtagatgcatatgggctcatcaagatgatcgtggaggctgcgcagacagctaaaaggaaccaggagacctgccagaagctagcacggcatgtgaagatgatcggcgacctgctgcagcgactccaaagcacagagcttatgcagcatcaagaaacgaggaacccggtggagcagctggaggagacgctccgacacacctacatgctcatcttgtcctgtcaggacagcagctacctgcacagctgcttcatgggagggaagcaggctcaccagctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagcttcgttaacacgacccgtacctgggagcggcttctgagaagagctcaaccttcttgcactgaggatactgcagatgagttacaaaaagtacatcattcagatcatagaattagattcaacacagaaattctcaacgcgactgaatttggtgatcagagtgtaactcaatgtccagaagtttttgaggaaaaacgaagtgaacaagcatcaatcagaagcctgaacctggatcaactagttggaaaacttcccaatggacttgagattgctgtcaaaaggcatgatacttcttcacatcaaggtgaagaagagttcatggctgagattgacgcaaagaatgtattcttgtctatgaatacattccaaatggaagtttggcttctaccattagcggcaaatgaagcaaaaaggatattgctaaattggtctaagcgccttaaaataattgaaggaatctcagatggtcttctttacctacacaaccattctcccaagtgcattgtccatagggacataaaagcaagtaatatcctcttagattatgaaatgaatgctaagatttctgattttggtctggccataaaattagctccgaaagcaactacagaggcactgaataacagaaaaaagttgcacaagcttattgatccatcattaggtgctaagaaacatgagcgagctcagattatgcaatgtcttagggtggcgatgttgtgcgttcgggatcgcgctgaacatcggcctaccatgtctgaagttgttactatgcttcctagcatcaagacaccgaaagacagaaagacctaa
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| Protein seq | MALWNGLGQVANIAQLAGVDAYGLIKMIVEAAQTAKRNQETCQKLARHVKMIGDLLQRLQSTELMQHQETRNPVEQLEETLRHTYMLILSCQDSSYLHSCFMGGKQAHQLREVQSDITFYLQLFPLVSFVNTTRTWERLLRRAQPSCTEDTADELQKVHHSDHRIRFNTEILNATEFGDQSVTQCPEVFEEKRSEQASIRSLNLDQLVGKLPNGLEIAVKRHDTSSHQGEEEFMAEIDAKNVFLSMNTFQMEVWLLPLAANEAKRILLNWSKRLKIIEGISDGLLYLHNHSPKCIVHRDIKASNILLDYEMNAKISDFGLAIKLAPKATTEALNNRKKLHKLIDPSLGAKKHERAQIMQCLRVAMLCVRDRAEHRPTMSEVVTMLPSIKTPKDRKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0670100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44750 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0670100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023150 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023250 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022890 | SBH | 0.0 | 0.0 | 0.231583 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022560 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022880 | SBH | 0.000000 | 0.0 | 0.987473 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0407400 | SBH | 0.0359625 | 0.621633 | 0.0343445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023710 | SBH | 0.0 | 0.0 | 0.014827 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0426500 | SBH | 0.046493 | 0.3637625 | 0.0500025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023640 | RBH | 1.663286 | 1.934665 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023050 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022750 | SBH | 0.669859 | 0.0 | 0.037494 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023100 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023500 | SBH | 0.0 | 0.000000 | 0.000000 |
