Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023170 | OGI:11076320 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28838827-28839373 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtgggcaggacatccagaagttggcaaacatggaagtagactgcctgaagcagaatcatgccatgaggctgaatgggtagaggaagacgaaccaggcgtttacatcactctaaccaccttgcctggaggtgcgagagatatcaagcgggttcggttcaggtacatcctgttaatcctgtgcaagaatcaacttttgTttggttcagcttttcactcttggtttgtatgaatccagccggaggagattcaacgaggcacaggcagatcaatggtggctggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattctgcctgaagcagaatcatgccatgaggctgaatgggtagagcaagacataccaggcgtttacatcactctaaccaccttgcctggaggtgcgagagatatcaagcgggttcggttcaggtacatcctgttaatcctgtgcatgaatcaacttttgtttggttcagcttttcactcttggtttgtatga
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| CDS seq | atgtgggcaggacatccagaagttggcaaacatggaagtagactgcctgaagcagaatcatgccatgaggctgaatgggtagaggaagacgaaccaggcgtttacatcactctaaccaccttgcctggaggtgcgagagatatcaagcgggttcggttcagccggaggagattcaacgaggcacaggcagatcaatggtggctggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattctgcctgaagcagaatcatgccatgaggctgaatgggtagagcaagacataccaggcgtttacatcactctaaccaccttgcctggagcttttcactcttggtttgtatga |
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| Protein seq | MWAGHPEVGKHGSRLPEAESCHEAEWVEEDEPGVYITLTTLPGGARDIKRVRFSRRRFNEAQADQWWLENRTRVYQHYNVRMVEKSASSIDNEILPEAESCHEAEWVEQDIPGVYITLTTLPGAFHSWFV |
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| Function | Protein Brevis radix-like 4 [UniProtKB/Swiss-Prot:Q8GZ92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023170 | OsLima_11g0023170.01 | Chr11 | 28838827 | 28839373 | + | NAM | ||
| CDS seq | atgtgggcaggacatccagaagttggcaaacatggaagtagactgcctgaagcagaatcatgccatgaggctgaatgggtagaggaagacgaaccaggcgtttacatcactctaaccaccttgcctggaggtgcgagagatatcaagcgggttcggttcagccggaggagattcaacgaggcacaggcagatcaatggtggctggagaacaggacaagggtataccagcattacaatgttcggatggttgaaaaatcagcctccagtatcgataatgagattctgcctgaagcagaatcatgccatgaggctgaatgggtagagcaagacataccaggcgtttacatcactctaaccaccttgcctggagcttttcactcttggtttgtatga
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| Protein seq | MWAGHPEVGKHGSRLPEAESCHEAEWVEEDEPGVYITLTTLPGGARDIKRVRFSRRRFNEAQADQWWLENRTRVYQHYNVRMVEKSASSIDNEILPEAESCHEAEWVEQDIPGVYITLTTLPGAFHSWFV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.463775 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72320 | SBH | 0.891349 | 1.297616 | 2.094269 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047230 | SBH | 0.695353 | 25.372143 | 7.276122 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023050 | RBH | 0.350881 | 2.159900 | 2.415120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047190 | SBH | 1.333590 | 14.760985 | 17.202003 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046600 | SBH | 0.330333 | 0.379624 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0401100 | RBH | 0 | 0 | 0.00518 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045640 | SBH | 0.668375 | 1.043799 | 2.231375 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0421400 | RBH | 1.5230995 | 6.917459 | 5.3415235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046140 | SBH | 0.635904 | 8.897161 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046400 | SBH | 0.431620 | 4.613942 | 6.328509 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
