Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0022950 | OGI:11075180 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28624430-28629834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatatctcaaatattggcttctcctcattgactaaaataactaatatatgtacaatcagattaatttaacttatatttcattgcgtgtccacagctcaattaatctttgtttctgccatcacttatcattccatttgcatgcttcaccatatgatatatttctagcttagttcataacaaaaattaaaacatgcatgcatgaacttctgtagccaaatttacctgtacatccaacctatttgtcgtcacttggcaaagttaatagcacctatacatgggaaatttgaaacattagtgttatgctttagacatggatggcttacattgatttactgcatttgactcttgtatacaacaatatgatagacaatacatctcctgcttgtgtcagtaagataatcgttgatgccagtcactacaaaaccttaatgcgtacgctgctaattaaccagaaccttcaattattttggtatcacacccacccgtacgatatatagtcaaccttgtattcttagatttggtgttgctaacccttaaccttggtgttcctctttgtccttctcatcggaaataatatgaccgccacttagatgtcaaccatctatcaagcactcaagcctcatgcatgtttatctttcatcacaatttgtagtccatgcttggcccaatccaactacaactcatagcacagatgaacctttgtaactcacatttttaactttgttgtacaagtaatttgtgattttgtatttaggtttactgctttgcattatttagaatttataatgaagcctatttctatttgctatctgtgttgtggtcatggaaccattcataatatgtgttgtctagaggctgctctgccaattctactatgccgatcggatcatgtggcatgaatatgtagtgtaatcatcatataccatcctagcaaacactgagtctttttctaaccaagacctagcaaacactaactcactaagtaaaagaagaaaccatactcaatacggttagtgtggagttcaacctccaagaacgaatgaacctcataaacttgaattggcaccataaatatgtattgtatccgttttttctcgaaggctggaagcaaagcatcaagttctgggaattgcctaatcataaagctaataacgcaataatcaaggaaatgtgaaaggtgataatagaactaagcatgaatagcaatagcattaccataagtccataacgccagaacaacataaactaacagtatgtcctccctcccggatgaaagatcttccctgcacaatcaagaaaaatggatcatatttgagaagggcacagaaaaaataatattagagaatgaatagggaaaaataagttccaactttataggctactgaaactcaaaagcagagacagacacagagagaaccaagatcagctgctcctatcactgtgctaaatgctgttatcgcttcatcctaagtttgtgtgagtaaattagattccaagcatgattcaatcatgacaaatcatgtcatatatcactgcgtcaacttccaaagcttgtgcgccggaatataaataagagctcaccaagataagagtatagatgacactctgtccattgtagcctctgcaacatttctatcaatacagattttagttaaccaacatgttaggagagggtgtattaaatactatcggagaaacataccaacttcaaaatgcaaccaaagtaagagagagtccagtgccgtgtgtgtggtgtgcgagagagggaagttggagcagaccatcatgtataaactcctcagttattgaaggatttttcttcaacctgctctttacctttatatattagtctaattttatgtcctatgatttaagatccatattttgatcagtgatttaatttttacatgataaagaaatttgaaagtacctaagaataactcccaccaaatactattatgcaaagttttcaacagaatgaaaacaaaaagggttgcaacccttgtatccatgagctattacgaacaaacataataaatgaagtacatgttcttcaacattatctttgaaagaactgagctgatcatcctagtttgttaactcactaatgctaccagtgagttgtcatatattccatggtaactttatatttagcggatatgtacaaggaaaaaacagaagaatatggatgaattcctttttctttgaaacaggatggctgtattgttttctaggactgaaacaacaaataagttataaaggaaaatgactatccatttggtataaccaacttgtggcagaccttaataagttagtaggcattgcaaagaagtcgacccccaaaagcaatagcttatgtcatacctagagttctagaagactggaagcacaactggacatcagcagaccttctaccagaattcactacaagagcattttccaccttcaaaatggtgaaaacgactagaatctcgcacaacgatcttccgatgggttatttcactaattaacttcattactgtatggcagtccacacagacccgaaggttcttcaccacccggatcacagaccctggaggagacttgattaatccaaaagcaacagccaatctctcgctgtgcaagaagagatggtgctccttttcgctttcttccaagtcatgcatcacagaactagtatcaggaacataaccccttttgcgcatctccaataccatttcctcaagaaaaaccataatttcttctctaacatcaagtggcacttccccagcatgaaacaaacggaattctcttccagcttcaatccagctataccctggctcttttcttatctccaatccaatcatgcactttctaaccttggctacggaatcccactttccgttcactgcataaacattagataacaagatatatgtggaagaatcttttggtcgtagctctaatagtttatcggaaatcctgatacacatttcagcatccttgtacttcgtacatgcgctcaacagggccccccaagtagcttcatcaggctcatatggcattgtagtcattagctcttcagcttccaataaatggcctgagcgactaagaagatccagataacacgtgtagtgctgcaatctaggagtgatgccatactcattcttcattgactcaaaaagctgtcgccctttctgaacaagaccagcatggctacaagcatagatcaacccgacaaaggtcacctcgttgggcttcgctcctgcaagaaccatcctgtcataaagagccaatgcctcctcagctcgaccatgctgtgcctctccaacaaccattgtcgtccacgagattacatcacggaatgtaatcccctcaaatacttctctagcagagagtatatcactgcatttcgagtacatgtcaatcaacgcattcccaacaatcatgttggacaggaacccaagcctcattgcggaaccatgcaactgcctacccagcacaaaagcagccaggtctgcagaagcgccaatgacgatcgacagcacgaatgcatcatcaatcctaacaccatcccgcctcAtctcaacaaaaagctccactgcgccgacactctcaccggtgttcactagccccgagatgagcgcagtccatgcaaacagattgcgcccaggcatgctacggaatagctgcagcgcctcctcactgcggccgttggacgcgtacccagaaaccagggcagtccacacaacgctgttcttggcactcatactgtcgaacaccttcctgccatcgtccggggagccacacttgcagtacatgtcgaccagagaggacttgacgacatcatccccgttgtatggggatgccacgaaatgcgcgtgcagctgcctgccaaggcggcggctacggagcctggcgaagacgctggcaacggagctgatcacgaagtggtcggggtggagggcgtcggcggagagcatgcagcggaggatcggcagcgcgagctcaggggacgcggagtgggagacggcagtgaggagagaGgagtagatgtagatgtcccggcgcggggtttcgtcgaacaggtggagggcgtcggggaggaggcgggacttggcgtaggcggagacgagcgccgcggggttcggagggtggtgggccagaccttccttgaggatgcgcgcgtgcatgccgcgcacggccgccggcgaccccgccgtggcacggacggcggctacagcggtggcggccggagagagcatgcataggtccgcttcgtgtcttcctccccaatatctgagccgttcgttctgaattgattgatcaataattctccttctttcgcctcctacaagcccacaaggccacaaagggatcgtttgagttcaacgagcaaaatacccgtgtgttgcaacggatgaaaacaattttaataattaatctgtcatatggtaaatcatttattttactcattgatacttaataaatattacgtgaaaatatttagaaatacatcaatatcattgtttattaataatatttttcctttaataattttaacttgtattttattatgttatcacttatatataaatttatatttttctttaattttatgtatgaatcgtacttaaactttataaaaatattgaattcacattgtttctaacctgataacctgataaagaaagaatgttaaattagattcatgccaagtggcacaatatgtcttttagaaaatttataacctaataaagaaaaaaatgttaaattagattaatgccaagtgtcacagtatgtcctttagaaaattttatggaatgaaaacttcttataagaatataccttaataaaaagatattttgagtgactgagtagtttgtgatatagattcttcttaagaaatttatgtgagttaggatgagtagaaattatgtgagcttacattttccgttctaatgcaactattctaagggtgtttggatgagattcagtaaccaaattacatctgctaaaaacaaaaatcaaaaataacaagttgaaagtaggtggaactgggcagaggcagatctaaccctgtcccaaacttttttgagggataacgcagaatacctgatgaggtgtgggtagggagggatgctcaccggcgatagacgatgcggtggaagcagcctctgctcgcaggatggggatcggcgcaagcggcgggcgaggagaagaaattcgaggccgaggccgaggccggatgggatggattaggatgctcaccagtgagggagcaggagaacgccggcgccacctctgctagcaggatggagatcggcgggagtcggggggcggcgggcaaggagacggggcggattggggaggcggaggtcgtgcagcgctctgctgccgcgccgccgcggtgtcgcctgcctat
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| CDS seq | atgctctctccggccgccaccgctgtagccgccgtccgtgccacggcggggtcgccggcggccgtgcgcggcatgcacgcgcgcatcctcaaggaaggtctggcccaccaccctccgaaccccgcggcgctcgtctccgcctacgccaagtcccgcctcctccccgacgccctccacctgttcgacgaaaccccgcgccgggacatctacatctactcCtctctcctcactgccgtctcccactccgcgtcccctgagctcgcgctgccgatcctccgctgcatgctctccgccgacgccctccaccccgaccacttcgtgatcagctccgttgccagcgtcttcgccaggctccgtagccgccgccttggcaggcagctgcacgcgcatttcgtggcatccccatacaacggggatgatgtcgtcaagtcctctctggtcgacatgtactgcaagtgtggctccccggacgatggcaggaaggtgttcgacagtatgagtgccaagaacagcgttgtgtggactgccctggtttctgggtacgcgtccaacggccgcagtgaggaggcgctgcagctattccgtagcatgcctgggcgcaatctgtttgcatggactgcgctcatctcggggctagtgaacaccggtgagagtgtcggcgcagtggagctttttgttgagaTgaggcgggatggtgttaggattgatgatgcattcgtgctgtcgatcgtcattggcgcttctgcagacctggctgcttttgtgctgggtaggcagttgcatggttccgcaatgaggcttgggttcctgtccaacatgattgttgggaatgcgttgattgacatgtactcgaaatgcagtgatatactctctgctagagaagtatttgaggggattacattccgtgatgtaatctcgtggacgacaatggttgttggagaggcacagcatggtcgagctgaggaggcattggctctttatgacaggatggttcttgcaggagcgaagcccaacgaggtgacctttgtcgggttgatctatgcttgtagccatgctggtcttgttcagaaagggcgacagctttttgagtcaatgaagaatgagtatggcatcactcctagattgcagcactacacgtgttatctggatcttcttagtcgctcaggccatttattggaagctgaagagctaatgactacaatgccatatgagcctgatgaagctacttggggggccctgttgagcgcatgtacgaagtacaaggatgctgaaatgtgtatcaggatttccgataaactattagagctacgaccaaaagattcttccacatatatcttgttatctaatgtttatgcagtgaacggaaagtgggattccgtagccaaggttagaaagtgcatgattggattggagataagaaaagagccagggtatagctggattgaagctggaagagaattcctcaatgaggagaagccaatatttgagatatga
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| Protein seq | MLSPAATAVAAVRATAGSPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFLNEEKPIFEI |
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| Function | Pentatricopeptide repeat-containing protein At4g14050, mitochondrial [UniProtKB/Swiss-Prot:O23266] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0022950 | OsLima_11g0022950.01 | Chr11 | 28624430 | 28629834 | - | NAM | ||
| CDS seq | atgctctctccggccgccaccgctgtagccgccgtccgtgccacggcggggtcgccggcggccgtgcgcggcatgcacgcgcgcatcctcaaggaaggtctggcccaccaccctccgaaccccgcggcgctcgtctccgcctacgccaagtcccgcctcctccccgacgccctccacctgttcgacgaaaccccgcgccgggacatctacatctactcCtctctcctcactgccgtctcccactccgcgtcccctgagctcgcgctgccgatcctccgctgcatgctctccgccgacgccctccaccccgaccacttcgtgatcagctccgttgccagcgtcttcgccaggctccgtagccgccgccttggcaggcagctgcacgcgcatttcgtggcatccccatacaacggggatgatgtcgtcaagtcctctctggtcgacatgtactgcaagtgtggctccccggacgatggcaggaaggtgttcgacagtatgagtgccaagaacagcgttgtgtggactgccctggtttctgggtacgcgtccaacggccgcagtgaggaggcgctgcagctattccgtagcatgcctgggcgcaatctgtttgcatggactgcgctcatctcggggctagtgaacaccggtgagagtgtcggcgcagtggagctttttgttgagaTgaggcgggatggtgttaggattgatgatgcattcgtgctgtcgatcgtcattggcgcttctgcagacctggctgcttttgtgctgggtaggcagttgcatggttccgcaatgaggcttgggttcctgtccaacatgattgttgggaatgcgttgattgacatgtactcgaaatgcagtgatatactctctgctagagaagtatttgaggggattacattccgtgatgtaatctcgtggacgacaatggttgttggagaggcacagcatggtcgagctgaggaggcattggctctttatgacaggatggttcttgcaggagcgaagcccaacgaggtgacctttgtcgggttgatctatgcttgtagccatgctggtcttgttcagaaagggcgacagctttttgagtcaatgaagaatgagtatggcatcactcctagattgcagcactacacgtgttatctggatcttcttagtcgctcaggccatttattggaagctgaagagctaatgactacaatgccatatgagcctgatgaagctacttggggggccctgttgagcgcatgtacgaagtacaaggatgctgaaatgtgtatcaggatttccgataaactattagagctacgaccaaaagattcttccacatatatcttgttatctaatgtttatgcagtgaacggaaagtgggattccgtagccaaggttagaaagtgcatgattggattggagataagaaaagagccagggtatagctggattgaagctggaagagaattcctcaatgaggagaagccaatatttgagatatga
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| Protein seq | MLSPAATAVAAVRATAGSPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFLNEEKPIFEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.094176 | 0.218149 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0661000 | RBH | 1.370635 | 0.966129 | 3.006692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43934 | RBH | 0.930329 | 0.528875 | 0.618415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0661000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022810 | RBH | 0.414387 | 3.384525 | 5.173321 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022850 | RBH | 0.097574 | 1.632271 | 1.420015 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022570 | RBH | 0.000000 | 5.001953 | 5.980205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022100 | RBH | 0.047638 | 0.075868 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022450 | RBH | 4.799940 | 5.993226 | 10.170014 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0409600 | SBH | 0.3560675 | 0.8803255 | 3.144579 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023430 | RBH | 0.106279 | 0.300620 | 0.900199 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0417000 | RBH | 2.0328025 | 7.02925 | 7.8759315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023100 | RBH | 0.781567 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022770 | RBH | 2.819545 | 10.622320 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022270 | RBH | 0.251666 | 0.0 | 0.649134 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022280 | RBH | 0.140650 | 0.109730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022640 | RBH | 0.383650 | 1.186432 | 1.359937 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023070 | RBH | 1.300563 | 14.942454 | 1.513406 |
