Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021600 | OGI:11072070 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27410182-27411940 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taataccacaaataaagccatctttatttttttaatgactcacataagacattgcgaaattctattgatagagcaggagaaaaaattgaaaggtcgtaactaggaaaaaaaatatcactacccacacatcgacagcgccaacgcatagaactaggaaaaggctagcaccggaccggccgctaggccaagaaagaaacacggccgagatcgcccaaataaagccatcttcacttggtgaagagcacgtccatgtcctccaagctccggcccctcgtctccggcagccgcacgtacacgaacacccacgccgccaccgccgcgccagcgtacacgaagaagcacccggccatggtgatgccgccggcgaccgagatgaacgtcatgctcagcacgccgcacgtcacccggttcaccgccacgccgacgcccgcgccctgcgcccgcagccacagcggcatgatctcgctgccgtacgacggcgccagcggcccgagccccaccgagaacgccgccacgtacgccgccgccgacgccacgcccgccgccgcgcgcgccggggacggcgcgccggcgccgacgcagagcgtcagcgccagcgaggccagcgccacggccatccccgCcgcgctccacagcagcagcgggcggcggccgacgcggtcggagaggagcgtggcgacgaggatggagcacgtcttgacgacgcccacggcgacggtggcggccagcacggaggtgttcgacgccatgccggcctgcttgaacaccagcgggctgtagagcacgatgacgtcgatgccggacgcttgctggaagaagtggagggacagcacgttggtcatgatccgccgcaccgtcggcgttggccggacgagcagctgcctccagacgccgccgggcacgccggcctgcgccgcgacggcccgcgtgatctcctcgaggcggaggtccgcctccgcgggggtatccgaggtgcgcgcgagcacggcgcgcgcctcggcgtcgcgcccgcgcatggcgagccaccggggcgactccggcatggcgagcacgcccgcggcgaggaacacgggcggcacgacgcccgcggcgaacatgacgcgccagccgaggcgcagcgggaggccggcgagggcgtagttggagacgtagctgaggaggatcccggcgttgatgaatatctccggcagggaggacagcaccccgcgcgaggacgccggggagatctcgacggcgtacaccggcgccacgacgacggcgaacccgacgccgacgctggtgacgaagcgcgccgccatgagcgccgcgtagctgccgcccagcgacatggcgagcgcgccggccatgagcagcgcgttcgccagcacgagcgtgccgcggcggccggcggcgtccgccaccgtgccggcggcgaggatggacgcgagcatgaacacgttcatcgacccggacagcacctccacctgctcgtcggcgagccccaggtcctcccggatgaacagctcggctccgctcatcagcgcgagatctacaagaaacagcaagacgacatcaacgacggcgacggcatgatcgcgtgccacgacgcgagactcgaagcagcaagctcggagacgtactgtagcccatgaggatggtggtcatggaggcgagcgtggcgcaggcgaacgcgaacgtgttccggcgaggctcgccgccgtgcttcgaggcgaggagcggcgctgccgcgtcgtcgccaccgctcgccatggcgcgtcgc
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| CDS seq | atggcgagcggtggcgacgacgcggcagcgccgctcctcgcctcgaagcacggcggcgagcctcgccggaacacgttcgcgttcgcctgcgccacgctcgcctccatgaccaccatcctcatgggctacaatctcgcgctgatgagcggagccgagctgttcatccgggaggacctggggctcgccgacgagcaggtggaggtgctgtccgggtcgatgaacgtgttcatgctcgcgtccatcctcgccgccggcacggtggcggacgccgccggccgccgcggcacgctcgtgctggcgaacgcgctgctcatggccggcgcgctcgccatgtcgctgggcggcagctacgcggcgctcatggcggcgcgcttcgtcaccagcgtcggcgtcgggttcgccgtcgtcgtggcgccggtgtacgccgtcgagatctccccggcgtcctcgcgcggggtgctgtcctccctgccggagatattcatcaacgccgggatcctcctcagctacgtctccaactacgccctcgccggcctcccgctgcgcctcggctggcgcgtcatgttcgccgcgggcgtcgtgccgcccgtgttcctcgccgcgggcgtgctcgccatgccggagtcgccccggtggctcgccatgcgcgggcgcgacgccgaggcgcgcgccgtgctcgcgcgcacctcggatacccccgcggaggcggacctccgcctcgaggagatcacgcgggccgtcgcggcgcaggccggcgtgcccggcggcgtctggaggcagctgctcgtccggccaacgccgacggtgcggcggatcatgaccaacgtgctgtccctccacttcttccagcaagcgtccggcatcgacgtcatcgtgctctacagcccgctggtgttcaagcaggccggcatggcgtcgaacacctccgtgctggccgccaccgtcgccgtgggcgtcgtcaagacgtgctccatcctcgtcgccacgctcctctccgaccgcgtcggccgccgcccgctgctgctgtggagcgcgGcggggatggccgtggcgctggcctcgctggcgctgacgctctgcgtcggcgccggcgcgccgtccccggcgcgcgcggcggcgggcgtggcgtcggcggcggcgtacgtggcggcgttctcggtggggctcgggccgctggcgccgtcgtacggcagcgagatcatgccgctgtggctgcgggcgcagggcgcgggcgtcggcgtggcggtgaaccgggtgacgtgcggcgtgctgagcatgacgttcatctcggtcgccggcggcatcaccatggccgggtgcttcttcgtgtacgctggcgcggcggtggcggcgtgggtgttcgtgtacgtgcggctgccggagacgaggggccggagcttggaggacatggacgtgctcttcaccaagtga
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| Protein seq | MASGGDDAAAPLLASKHGGEPRRNTFAFACATLASMTTILMGYNLALMSGAELFIREDLGLADEQVEVLSGSMNVFMLASILAAGTVADAAGRRGTLVLANALLMAGALAMSLGGSYAALMAARFVTSVGVGFAVVVAPVYAVEISPASSRGVLSSLPEIFINAGILLSYVSNYALAGLPLRLGWRVMFAAGVVPPVFLAAGVLAMPESPRWLAMRGRDAEARAVLARTSDTPAEADLRLEEITRAVAAQAGVPGGVWRQLLVRPTPTVRRIMTNVLSLHFFQQASGIDVIVLYSPLVFKQAGMASNTSVLAATVAVGVVKTCSILVATLLSDRVGRRPLLLWSAAGMAVALASLALTLCVGAGAPSPARAAAGVASAAAYVAAFSVGLGPLAPSYGSEIMPLWLRAQGAGVGVAVNRVTCGVLSMTFISVAGGITMAGCFFVYAGAAVAAWVFVYVRLPETRGRSLEDMDVLFTK |
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| Function | Polyol transporter 5 [UniProtKB/Swiss-Prot:Q8VZ80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021600 | OsLima_11g0021600.01 | Chr11 | 27410182 | 27411940 | - | NAM | ||
| CDS seq | atggcgagcggtggcgacgacgcggcagcgccgctcctcgcctcgaagcacggcggcgagcctcgccggaacacgttcgcgttcgcctgcgccacgctcgcctccatgaccaccatcctcatgggctacaatctcgcgctgatgagcggagccgagctgttcatccgggaggacctggggctcgccgacgagcaggtggaggtgctgtccgggtcgatgaacgtgttcatgctcgcgtccatcctcgccgccggcacggtggcggacgccgccggccgccgcggcacgctcgtgctggcgaacgcgctgctcatggccggcgcgctcgccatgtcgctgggcggcagctacgcggcgctcatggcggcgcgcttcgtcaccagcgtcggcgtcgggttcgccgtcgtcgtggcgccggtgtacgccgtcgagatctccccggcgtcctcgcgcggggtgctgtcctccctgccggagatattcatcaacgccgggatcctcctcagctacgtctccaactacgccctcgccggcctcccgctgcgcctcggctggcgcgtcatgttcgccgcgggcgtcgtgccgcccgtgttcctcgccgcgggcgtgctcgccatgccggagtcgccccggtggctcgccatgcgcgggcgcgacgccgaggcgcgcgccgtgctcgcgcgcacctcggatacccccgcggaggcggacctccgcctcgaggagatcacgcgggccgtcgcggcgcaggccggcgtgcccggcggcgtctggaggcagctgctcgtccggccaacgccgacggtgcggcggatcatgaccaacgtgctgtccctccacttcttccagcaagcgtccggcatcgacgtcatcgtgctctacagcccgctggtgttcaagcaggccggcatggcgtcgaacacctccgtgctggccgccaccgtcgccgtgggcgtcgtcaagacgtgctccatcctcgtcgccacgctcctctccgaccgcgtcggccgccgcccgctgctgctgtggagcgcgGcggggatggccgtggcgctggcctcgctggcgctgacgctctgcgtcggcgccggcgcgccgtccccggcgcgcgcggcggcgggcgtggcgtcggcggcggcgtacgtggcggcgttctcggtggggctcgggccgctggcgccgtcgtacggcagcgagatcatgccgctgtggctgcgggcgcagggcgcgggcgtcggcgtggcggtgaaccgggtgacgtgcggcgtgctgagcatgacgttcatctcggtcgccggcggcatcaccatggccgggtgcttcttcgtgtacgctggcgcggcggtggcggcgtgggtgttcgtgtacgtgcggctgccggagacgaggggccggagcttggaggacatggacgtgctcttcaccaagtga
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| Protein seq | MASGGDDAAAPLLASKHGGEPRRNTFAFACATLASMTTILMGYNLALMSGAELFIREDLGLADEQVEVLSGSMNVFMLASILAAGTVADAAGRRGTLVLANALLMAGALAMSLGGSYAALMAARFVTSVGVGFAVVVAPVYAVEISPASSRGVLSSLPEIFINAGILLSYVSNYALAGLPLRLGWRVMFAAGVVPPVFLAAGVLAMPESPRWLAMRGRDAEARAVLARTSDTPAEADLRLEEITRAVAAQAGVPGGVWRQLLVRPTPTVRRIMTNVLSLHFFQQASGIDVIVLYSPLVFKQAGMASNTSVLAATVAVGVVKTCSILVATLLSDRVGRRPLLLWSAAGMAVALASLALTLCVGAGAPSPARAAAGVASAAAYVAAFSVGLGPLAPSYGSEIMPLWLRAQGAGVGVAVNRVTCGVLSMTFISVAGGITMAGCFFVYAGAAVAAWVFVYVRLPETRGRSLEDMDVLFTK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.072847 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0637200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41870 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0637200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021390 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021310 | SBH | 0.0 | 0.202935 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021260 | RBH | 0.0 | 0.0 | 0.399335 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021220 | RBH | 0.0 | 1.675495 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0379900 | RBH | 0.872179 | 8.290015 | 0.9282905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021690 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0399700 | SBH | 0.328556 | 11.522487 | 0.6131185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021090 | RBH | 0.0 | 0.534487 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021070 | RBH | 0.0 | 0.0 | 0.212602 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021620 | RBH | 0.0 | 5.811587 | 0.0 |
