Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021130 | OGI:11070620 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:26726136-26729759 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttgcccattgcagagaggtttgcacatctccatgaactcctggtagtctgaagccaagagcaggaagacacagggaaggtatattttcttgatctctcattaacatggttagatgtttgtaatattcagagatctgaactttcagcatccttggcatcaacaagatagtggtatgccaactgataattgctttcaacttcattgtttctaaactggactgacctcaggtgcaaactcgtccaagagtgcggaagaacagcagaggagatggatgggttcatggtgagcgtcgccacgggggcgatgaactccctaatcgacaagctcaccatgctgctgggtcaggaattcaggctgcacaagggggtgcagcgcgacatcgccttgttgaatggtgagctgagctgcatgaatgCTctgctggagaaactggccggcatggaggtgcttgaCccccagatgatggagtggaggaaccaagtgagggagatggcctatgacatcgaggattgcatcgacaggtacatctaccagctacactacgagccacagagacctactggcatcgtgggattcttccatgactatgttcacaaggtgaaggagctgctagctcgacgcgcggtcgctcagcagataaaagttctcaaggatgacattgttgaggcaagccacagaaggaagaggtacaagattgatcctgaattgtactctgaaaccacaaatgtggtgctcattgatcctcgattacctgcactctatgttgaggcatccaatctagtcggtattgatattccaagggatcagctgattaaccttgtagatgatggagatcagtcattcaaggtgatttcaattgtaggagttggaggcttaggcaaaactacccttgcaaatgaagtttacaaaaaaactggtgggcgatttgattgtcaggcttttgtgtctgtctcccagaagcctgatgtaaagaagattttacggagcataatttgccaaaccatggagccatatcatgctagcacaaatccagataaagctgtaatttctcaaatcaagaaacaagattacagtagcacagaagcgggggatgtggagtggctcataaacatactgagggttttcctgaaggacaagaggtaagctctctgtttcaaattacacgccatttagcatttaagctctgtttgaatttacatgtcattctaccagtaggcaaaattataatttcattgcaacattatgtcagtgattgatgtacatgttgtgcacataaatagattagataataagtatgtacagtaggccatacttatatcagtgatctgttccatattaaatcatcgtatctctcatttgctaggtatttgatcgtaattgatgatatatggagcacgcaagaatggatgaccattaaatttgccttgtttgagaatacttgtggtagcaggatactagtgacaacaagaatttctactgttgccaagtcatgttgctcccctgatcgtggtacagtttatgaattaaggccactaagtgaagctgactccatgtgtctattcttcagaagaattttcggctcagaagatctatgcccagttaaccttAAAGatgtttcaactgaaatTAtaaaaaagtgtggtggtctgccattggcaattattactatggctagcctattggctgataaatcagatagaagagaagaatgggtttgcattcggaattcaattggttcaggactcgagaaaaaatacgatctggaggtaatgagaagtattttatcccttagttaccgtgatctccccctccatttgaagacatgcttgttatatctaagcatttatccagaagattataagataaatatgcatcagctggtaaggaggtggatagcagaagggttcatcaaggacaaaagtgggagaaatttaatggtggaagggaaatgctaTtttaatgaacttataaacagaagtatgatccagccagtagatattgggattgatggtcaaccaaaggcttgccgtgtgcatgatatgattcttgatctcatcgtatccaaggcagtagatgaaaatttttcgacttccattggtgatgaaacacatagattggcatctcaagctaagattcgccgactctctgttgactactctgggcaagaagtttctgtatcatggccatccctgatgttagctcatgttcgatcccttagcatatttggatactctgaacaaatgcctcctatttcagaattcaaagctttaagagtgttggatctggagagcagtgtgaaattgcaaaactctgatcttaacaacgtggtggatctatttcagttgaggtacttacggattgcagccagtagaatcacacatcttccagaacaaattggggagcttcagtttctcgaaacattggacctgcgtcgtacatggataagaaaattgccagcaagcattgttaaattgcgacggttgagctgtttttctgctaatggtgcacggttacctgacggagtcggaaaaatgcaatctctacaggaactgtcaggtataaccgtgtacgacgaatgctcaacaaattctttgctggagctgggcaatttgaacagcctgagaactctcaagctaacttggtacattcgcgaatcgcgcaaggatagaacacattatactgatagcttggcttcatcacttggcaaacttgtcagttccagccttgaatcattgagcattatcaatggacccttttctggttacatcccctttgattcttggtcttggtcatcatctcctcatctcctgcaggaattatacattccgaaatgctgtttccaaaggatcccagattggatggcttcaatgaataatctctacaggctatgcatcaggtctaagcaagtgacaaagcaaatcctccagatccttggagacttgcctgcattgctagacctggagctgcgttcagaatcagatgatcccatggaaattctcattatcagcaaatgcatattccgatgcctgaagatcttccgtctgtatggatcgttcgttgggctgatcttcgaggatggatccatgcagaaggtcagagaaatctcggttgttgttagagcacacaaggcaaaatctgcattcgctgatcatcctgatcttggcattcgcaacctcacctctcttatggatctcaatgtgtggattaattgcgagggagctagggttcaagaggtgacggtgttggaagctgccattgcagatgcaaccgctctacttcccaaccatcccacaccacatttcttcagagaaaatgaagaaaatatggtgaaagatgatcttcccaaccatccggcaccacatttcttcagagaaaatgaagagaagatggtgaaagatgaagcacacatgcaggagaaaatgttggagtaggacctgaagattcaaggattcatttctacagataaacatacaggttaagataagttttttgttggATAatatcatatcagtaaatttgttggaaaccagagtcataaacttgaaatccaagttacgaacataatctttatttttttagttgtaatctttgagacataatctccataaccaccAaaaaaatatc
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| CDS seq | atggatgggttcatggtgagcgtcgccacgggggcgatgaactccctaatcgacaagctcaccatgctgctgggtcaggaattcaggctgcacaagggggtgcagcgcgacatcgccttgttgaatggtgagctgagctgcatgaatgCTctgctggagaaactggccggcatggaggtgcttgaCccccagatgatggagtggaggaaccaagtgagggagatggcctatgacatcgaggattgcatcgacaggtacatctaccagctacactacgagccacagagacctactggcatcgtgggattcttccatgactatgttcacaaggtgaaggagctgctagctcgacgcgcggtcgctcagcagataaaagttctcaaggatgacattgttgaggcaagccacagaaggaagaggtacaagattgatcctgaattgtactctgaaaccacaaatgtggtgctcattgatcctcgattacctgcactctatgttgaggcatccaatctagtcggtattgatattccaagggatcagctgattaaccttgtagatgatggagatcagtcattcaaggtgatttcaattgtaggagttggaggcttaggcaaaactacccttgcaaatgaagtttacaaaaaaactggtgggcgatttgattgtcaggcttttgtgtctgtctcccagaagcctgatgtaaagaagattttacggagcataatttgccaaaccatggagccatatcatgctagcacaaatccagataaagctgtaatttctcaaatcaagaaacaagattacagtagcacagaagcgggggatgtggagtggctcataaacatactgagggttttcctgaaggacaagaggtatttgatcgtaattgatgatatatggagcacgcaagaatggatgaccattaaatttgccttgtttgagaatacttgtggtagcaggatactagtgacaacaagaatttctactgttgccaagtcatgttgctcccctgatcgtggtacagtttatgaattaaggccactaagtgaagctgactccatgtgtctattcttcagaagaattttcggctcagaagatctatgcccagttaaccttAAAGatgtttcaactgaaatTAtaaaaaagtgtggtggtctgccattggcaattattactatggctagcctattggctgataaatcagatagaagagaagaatgggtttgcattcggaattcaattggttcaggactcgagaaaaaatacgatctggaggtaatgagaagtattttatcccttagttaccgtgatctccccctccatttgaagacatgcttgttatatctaagcatttatccagaagattataagataaatatgcatcagctggtaaggaggtggatagcagaagggttcatcaaggacaaaagtgggagaaatttaatggtggaagggaaatgctaTtttaatgaacttataaacagaagtatgatccagccagtagatattgggattgatggtcaaccaaaggcttgccgtgtgcatgatatgattcttgatctcatcgtatccaaggcagtagatgaaaatttttcgacttccattggtgatgaaacacatagattggcatctcaagctaagattcgccgactctctgttgactactctgggcaagaagtttctgtatcatggccatccctgatgttagctcatgttcgatcccttagcatatttggatactctgaacaaatgcctcctatttcagaattcaaagctttaagagtgttggatctggagagcagtgtgaaattgcaaaactctgatcttaacaacgtggtggatctatttcagttgaggtacttacggattgcagccagtagaatcacacatcttccagaacaaattggggagcttcagtttctcgaaacattggacctgcgtcgtacatggataagaaaattgccagcaagcattgttaaattgcgacggttgagctgtttttctgctaatggtgcacggttacctgacggagtcggaaaaatgcaatctctacaggaactgtcaggtataaccgtgtacgacgaatgctcaacaaattctttgctggagctgggcaatttgaacagcctgagaactctcaagctaacttggtacattcgcgaatcgcgcaaggatagaacacattatactgatagcttggcttcatcacttggcaaacttgtcagttccagccttgaatcattgagcattatcaatggacccttttctggttacatcccctttgattcttggtcttggtcatcatctcctcatctcctgcaggaattatacattccgaaatgctgtttccaaaggatcccagattggatggcttcaatgaataatctctacaggctatgcatcaggtctaagcaagtgacaaagcaaatcctccagatccttggagacttgcctgcattgctagacctggagctgcgttcagaatcagatgatcccatggaaattctcattatcagcaaatgcatattccgatgcctgaagatcttccgtctgtatggatcgttcgttgggctgatcttcgaggatggatccatgcagaaggtcagagaaatctcggttgttgttagagcacacaaggcaaaatctgcattcgctgatcatcctgatcttggcattcgcaacctcacctctcttatggatctcaatgtgtggattaattgcgagggagctagggttcaagaggtgacggtgttggaagctgccattgcagatgcaaccgctctacttcccaaccatcccacaccacatttcttcagagaaaatgaagaaaatatggtgaaagatgatcttcccaaccatccggcaccacatttcttcagagaaaatgaagagaagatggtgaaagatgaagcacacatgcaggagaaaatgttggagtag
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| Protein seq | MDGFMVSVATGAMNSLIDKLTMLLGQEFRLHKGVQRDIALLNGELSCMNALLEKLAGMEVLDPQMMEWRNQVREMAYDIEDCIDRYIYQLHYEPQRPTGIVGFFHDYVHKVKELLARRAVAQQIKVLKDDIVEASHRRKRYKIDPELYSETTNVVLIDPRLPALYVEASNLVGIDIPRDQLINLVDDGDQSFKVISIVGVGGLGKTTLANEVYKKTGGRFDCQAFVSVSQKPDVKKILRSIICQTMEPYHASTNPDKAVISQIKKQDYSSTEAGDVEWLINILRVFLKDKRYLIVIDDIWSTQEWMTIKFALFENTCGSRILVTTRISTVAKSCCSPDRGTVYELRPLSEADSMCLFFRRIFGSEDLCPVNLKDVSTEIIKKCGGLPLAIITMASLLADKSDRREEWVCIRNSIGSGLEKKYDLEVMRSILSLSYRDLPLHLKTCLLYLSIYPEDYKINMHQLVRRWIAEGFIKDKSGRNLMVEGKCYFNELINRSMIQPVDIGIDGQPKACRVHDMILDLIVSKAVDENFSTSIGDETHRLASQAKIRRLSVDYSGQEVSVSWPSLMLAHVRSLSIFGYSEQMPPISEFKALRVLDLESSVKLQNSDLNNVVDLFQLRYLRIAASRITHLPEQIGELQFLETLDLRRTWIRKLPASIVKLRRLSCFSANGARLPDGVGKMQSLQELSGITVYDECSTNSLLELGNLNSLRTLKLTWYIRESRKDRTHYTDSLASSLGKLVSSSLESLSIINGPFSGYIPFDSWSWSSSPHLLQELYIPKCCFQRIPDWMASMNNLYRLCIRSKQVTKQILQILGDLPALLDLELRSESDDPMEILIISKCIFRCLKIFRLYGSFVGLIFEDGSMQKVREISVVVRAHKAKSAFADHPDLGIRNLTSLMDLNVWINCEGARVQEVTVLEAAIADATALLPNHPTPHFFRENEENMVKDDLPNHPAPHFFRENEEKMVKDEAHMQEKMLE |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021130 | OsLima_11g0021130.01 | Chr11 | 26726136 | 26729759 | + | NAM | ||
| CDS seq | atggatgggttcatggtgagcgtcgccacgggggcgatgaactccctaatcgacaagctcaccatgctgctgggtcaggaattcaggctgcacaagggggtgcagcgcgacatcgccttgttgaatggtgagctgagctgcatgaatgCTctgctggagaaactggccggcatggaggtgcttgaCccccagatgatggagtggaggaaccaagtgagggagatggcctatgacatcgaggattgcatcgacaggtacatctaccagctacactacgagccacagagacctactggcatcgtgggattcttccatgactatgttcacaaggtgaaggagctgctagctcgacgcgcggtcgctcagcagataaaagttctcaaggatgacattgttgaggcaagccacagaaggaagaggtacaagattgatcctgaattgtactctgaaaccacaaatgtggtgctcattgatcctcgattacctgcactctatgttgaggcatccaatctagtcggtattgatattccaagggatcagctgattaaccttgtagatgatggagatcagtcattcaaggtgatttcaattgtaggagttggaggcttaggcaaaactacccttgcaaatgaagtttacaaaaaaactggtgggcgatttgattgtcaggcttttgtgtctgtctcccagaagcctgatgtaaagaagattttacggagcataatttgccaaaccatggagccatatcatgctagcacaaatccagataaagctgtaatttctcaaatcaagaaacaagattacagtagcacagaagcgggggatgtggagtggctcataaacatactgagggttttcctgaaggacaagaggtatttgatcgtaattgatgatatatggagcacgcaagaatggatgaccattaaatttgccttgtttgagaatacttgtggtagcaggatactagtgacaacaagaatttctactgttgccaagtcatgttgctcccctgatcgtggtacagtttatgaattaaggccactaagtgaagctgactccatgtgtctattcttcagaagaattttcggctcagaagatctatgcccagttaaccttAAAGatgtttcaactgaaatTAtaaaaaagtgtggtggtctgccattggcaattattactatggctagcctattggctgataaatcagatagaagagaagaatgggtttgcattcggaattcaattggttcaggactcgagaaaaaatacgatctggaggtaatgagaagtattttatcccttagttaccgtgatctccccctccatttgaagacatgcttgttatatctaagcatttatccagaagattataagataaatatgcatcagctggtaaggaggtggatagcagaagggttcatcaaggacaaaagtgggagaaatttaatggtggaagggaaatgctaTtttaatgaacttataaacagaagtatgatccagccagtagatattgggattgatggtcaaccaaaggcttgccgtgtgcatgatatgattcttgatctcatcgtatccaaggcagtagatgaaaatttttcgacttccattggtgatgaaacacatagattggcatctcaagctaagattcgccgactctctgttgactactctgggcaagaagtttctgtatcatggccatccctgatgttagctcatgttcgatcccttagcatatttggatactctgaacaaatgcctcctatttcagaattcaaagctttaagagtgttggatctggagagcagtgtgaaattgcaaaactctgatcttaacaacgtggtggatctatttcagttgaggtacttacggattgcagccagtagaatcacacatcttccagaacaaattggggagcttcagtttctcgaaacattggacctgcgtcgtacatggataagaaaattgccagcaagcattgttaaattgcgacggttgagctgtttttctgctaatggtgcacggttacctgacggagtcggaaaaatgcaatctctacaggaactgtcaggtataaccgtgtacgacgaatgctcaacaaattctttgctggagctgggcaatttgaacagcctgagaactctcaagctaacttggtacattcgcgaatcgcgcaaggatagaacacattatactgatagcttggcttcatcacttggcaaacttgtcagttccagccttgaatcattgagcattatcaatggacccttttctggttacatcccctttgattcttggtcttggtcatcatctcctcatctcctgcaggaattatacattccgaaatgctgtttccaaaggatcccagattggatggcttcaatgaataatctctacaggctatgcatcaggtctaagcaagtgacaaagcaaatcctccagatccttggagacttgcctgcattgctagacctggagctgcgttcagaatcagatgatcccatggaaattctcattatcagcaaatgcatattccgatgcctgaagatcttccgtctgtatggatcgttcgttgggctgatcttcgaggatggatccatgcagaaggtcagagaaatctcggttgttgttagagcacacaaggcaaaatctgcattcgctgatcatcctgatcttggcattcgcaacctcacctctcttatggatctcaatgtgtggattaattgcgagggagctagggttcaagaggtgacggtgttggaagctgccattgcagatgcaaccgctctacttcccaaccatcccacaccacatttcttcagagaaaatgaagaaaatatggtgaaagatgatcttcccaaccatccggcaccacatttcttcagagaaaatgaagagaagatggtgaaagatgaagcacacatgcaggagaaaatgttggagtag
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| Protein seq | MDGFMVSVATGAMNSLIDKLTMLLGQEFRLHKGVQRDIALLNGELSCMNALLEKLAGMEVLDPQMMEWRNQVREMAYDIEDCIDRYIYQLHYEPQRPTGIVGFFHDYVHKVKELLARRAVAQQIKVLKDDIVEASHRRKRYKIDPELYSETTNVVLIDPRLPALYVEASNLVGIDIPRDQLINLVDDGDQSFKVISIVGVGGLGKTTLANEVYKKTGGRFDCQAFVSVSQKPDVKKILRSIICQTMEPYHASTNPDKAVISQIKKQDYSSTEAGDVEWLINILRVFLKDKRYLIVIDDIWSTQEWMTIKFALFENTCGSRILVTTRISTVAKSCCSPDRGTVYELRPLSEADSMCLFFRRIFGSEDLCPVNLKDVSTEIIKKCGGLPLAIITMASLLADKSDRREEWVCIRNSIGSGLEKKYDLEVMRSILSLSYRDLPLHLKTCLLYLSIYPEDYKINMHQLVRRWIAEGFIKDKSGRNLMVEGKCYFNELINRSMIQPVDIGIDGQPKACRVHDMILDLIVSKAVDENFSTSIGDETHRLASQAKIRRLSVDYSGQEVSVSWPSLMLAHVRSLSIFGYSEQMPPISEFKALRVLDLESSVKLQNSDLNNVVDLFQLRYLRIAASRITHLPEQIGELQFLETLDLRRTWIRKLPASIVKLRRLSCFSANGARLPDGVGKMQSLQELSGITVYDECSTNSLLELGNLNSLRTLKLTWYIRESRKDRTHYTDSLASSLGKLVSSSLESLSIINGPFSGYIPFDSWSWSSSPHLLQELYIPKCCFQRIPDWMASMNNLYRLCIRSKQVTKQILQILGDLPALLDLELRSESDDPMEILIISKCIFRCLKIFRLYGSFVGLIFEDGSMQKVREISVVVRAHKAKSAFADHPDLGIRNLTSLMDLNVWINCEGARVQEVTVLEAAIADATALLPNHPTPHFFRENEENMVKDDLPNHPAPHFFRENEEKMVKDEAHMQEKMLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.762540 | 0.356137 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0629600 | RBH | 1.379275 | 1.106049 | 2.761263 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41170 | RBH | 0.472281 | 0.314193 | 0.331847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0629600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021000 | RBH | 1.741207 | 9.585806 | 5.484225 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020950 | RBH | 0.750689 | 2.735299 | 2.444886 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020840 | RBH | 3.800937 | 1.381757 | 4.590350 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020320 | RBH | 0.490201 | 0.170030 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020860 | RBH | 17.807264 | 7.168045 | 3.168895 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0369400 | RBH | 3.570938 | 10.811085 | 0.708379 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021340 | RBH | 0.702290 | 0.346317 | 0.747525 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0390900 | SBH | 1.7174605 | 14.0299365 | 7.1677355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021260 | RBH | 1.197696 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020960 | RBH | 16.693504 | 18.799938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020580 | RBH | 1.144381 | 0.0 | 0.710743 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020710 | RBH | 0.543271 | 3.668757 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020660 | RBH | 2.072188 | 1.680939 | 1.807458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021120 | RBH | 4.939681 | 20.642439 | 2.499223 |
