Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0020920 | OGI:11069770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:26263200-26265684 | ||||||||
| Gene Symbol | OsMB52, MB52 | ||||||||||
| DNA seq | ttagttacgttgctcccaattcaagcaaccaactttttttaaaacagaagccaacttcttaagaacataagagcagctccttgtcaaatgcagatagccatcagtcttcatgacgaccttcagattaccaggatccgccatgaatttgaagcaggcctccttgagcccatcacaatgatgctgctcagccaacgtcaacgccgtagccgccgtgctggtgtcgacgtggctgcgcagctgtgtcctcgcagatcagcttcagcctctccatgccatacctgtccgccgcgacgagcagaagctccgcgccatggctaccacctcctcctcctcctcgtcatctaccttcggcaaggagtcgttgtagatgaagtggagcatggcctcgaataccctcggctccatatcggacatgggggcttcatgtcatggacatggattgtctcctcgacatcttacgagaacaagattagagtgttgaagctatgcaaaaactaatcccgacaatgcgagccaccgtaacaagccttgctcctcatcagagatcaaagccgatgcagtccaattcgaaacaagaaactcgtcgaaagtaaaagggtgccgatgcgctgaaagtagattgtattgatctatggagatagtttataatgaccttgggtgtacatattagtttataatgaccttgggtgtacatatttatacctatggataatagttcgtattagacacgatacaaacttttctaaatataaaaggaaaaacattaagtacttatcggacactaaacatactttcctaaagataaaaggaaactaacgaccgtttctaatcaatacataaactatcatgctgcatcctccgtaaactcggtctctttctgataaactttgtttaattgattaattttcttagccgaatctactaaaaatccgactattgatgacttgataattcctatcggctgataccaagacgctgaagccgatagtgactctaagccgatgatgacttcggggctaccaaattttggcgttacacatgcccccgattttgggagtatgaggactcatgcttcgaaactctcttttgtttagtctttcatgagtcgatactgtcttcatcggatgagctaggttgttgaattcgtggaaaaataatctatccttgataggtgttgataatccttggaatgcaagatccgctagctgctcatcacttaggctcaaactataacatcggctgcggatattacgaaatcttttaatatattccatagccgattctccttcttgctgcttaaccaataataagtctgaaagtttcaactcatcgattctagcaaagaaatattcatgaaattgcttctcaagatcgacccatcctctgatagaatttggtggtaataatgaaaaccatgtgaaagccgatccagtcaaagacaatggaaaaagtttaacttttagagcctcttcagccaatgcctccccacattgtgctaaaaatcggcagatatgttccattgtagatatatcatcttgccctgaatatttggagaaatctggaaccttgtattggtgtggcaatggaaccctatcaaactattcaggatatggcagccgatacataaagtttgttccttgggcttaagtccaacctgctcatttactaattttgtagttctattggcccaatcttcttcatatagatatctttgagtttcttttggccgatattgttgatataactcatcatgcacatattggtgtgcttgtcccctagctgatactgttgTttttcttcaatttgcctccagagatggactctttgatcaattaactcatcaaccattctctttatcaacttttgtaatgtattcaacagaactccagatggattggataaggcacgatgaactgcttgattgactttaacttgaagtgtttcactctccatgacgaccttgaagcaagcctccttgagcccctcacagtgatgctgctcagccaacgccaacgtcgtccctgccgtgctggcgtcgacgtggctgcacagcgtgtcctcgcagatcagcttcagcctctccacgcccatacctgtccgctgcgacgagcagatgctgcgccatggctaccacctcgtcgtcgtcttccttgggcaacgagtcgttgtagatgaagtggagcatggcctcgaacaccctcggctccatgtcatggacatggatggtctccttgttgttctgacccatcgggccgaagagctccgccatgaacaccggcgaccgggcggcgagcacgcaccggtgcgccgcgaatgtctcgtcgccgacctggaccgtgatgtccgccccatgtccgccagagaggaggctgccgagatgccggtgcatgaccggcggtggcacggcgacgagcggcctactcggctccgacccatcgccggcggcgccgttgtcgtcgcgggttgccgaagagttggacgccat
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| CDS seq | atggcgtccaactcttcggcaacccgcgacgacaacggcgccgccggcgatgggtcggagccgagtaggccgctcgtcgccgtgccaccgccggtcatgcaccggcatctcggcagcctcctctctggcggacatggggcggacatcacggtccaggtcggcgacgagacattcgcggcgcaccggtgcgtgctcgccgcccggtcgccggtgttcatggcggagctcttcggcccgatgggtcagaacaacaaggagaccatccatgtccatgacatggagccgagggtgttcgaggccatgctccacttcatctacaacgactcgttgcccaaggaagacgacgacgaggtggtagccatggcgcagcatctgctcgtcgcagcggacaggtatgggcgtggagaggctgaagctgatctgcgaggacacgctgtgcagccacgtcgacgccagcacggcagggacgacgttggccatcattgtgatgggctcaaggaggcctgcttcaaattcatggcggatcctggtaatctgaaggtcgtcatgaagactgatggctatctgcatttgacaaggagctgctcttatgttcttaagaagttggcttctgttttaaaaaaagttggttgcttgaattgggagcaacgtaactaa
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| Protein seq | MASNSSATRDDNGAAGDGSEPSRPLVAVPPPVMHRHLGSLLSGGHGADITVQVGDETFAAHRCVLAARSPVFMAELFGPMGQNNKETIHVHDMEPRVFEAMLHFIYNDSLPKEDDDEVVAMAQHLLVAADRYGRGEAEADLRGHAVQPRRRQHGRDDVGHHCDGLKEACFKFMADPGNLKVVMKTDGYLHLTRSCSYVLKKLASVLKKVGCLNWEQRN |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0020920 | OsLima_11g0020920.01 | Chr11 | 26263200 | 26265684 | - | NAM | ||
| CDS seq | atggcgtccaactcttcggcaacccgcgacgacaacggcgccgccggcgatgggtcggagccgagtaggccgctcgtcgccgtgccaccgccggtcatgcaccggcatctcggcagcctcctctctggcggacatggggcggacatcacggtccaggtcggcgacgagacattcgcggcgcaccggtgcgtgctcgccgcccggtcgccggtgttcatggcggagctcttcggcccgatgggtcagaacaacaaggagaccatccatgtccatgacatggagccgagggtgttcgaggccatgctccacttcatctacaacgactcgttgcccaaggaagacgacgacgaggtggtagccatggcgcagcatctgctcgtcgcagcggacaggtatgggcgtggagaggctgaagctgatctgcgaggacacgctgtgcagccacgtcgacgccagcacggcagggacgacgttggccatcattgtgatgggctcaaggaggcctgcttcaaattcatggcggatcctggtaatctgaaggtcgtcatgaagactgatggctatctgcatttgacaaggagctgctcttatgttcttaagaagttggcttctgttttaaaaaaagttggttgcttgaattgggagcaacgtaactaa
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| Protein seq | MASNSSATRDDNGAAGDGSEPSRPLVAVPPPVMHRHLGSLLSGGHGADITVQVGDETFAAHRCVLAARSPVFMAELFGPMGQNNKETIHVHDMEPRVFEAMLHFIYNDSLPKEDDDEVVAMAQHLLVAADRYGRGEAEADLRGHAVQPRRRQHGRDDVGHHCDGLKEACFKFMADPGNLKVVMKTDGYLHLTRSCSYVLKKLASVLKKVGCLNWEQRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0622600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40680 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0622600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020730 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020120 | RBH | 0.000000 | 0.174657 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020650 | RBH | 0.0 | 2.757823 | 9.033245 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0364900 | RBH | 0 | 0 | 0.027334 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021130 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0383500 | SBH | 0 | 0 | 0.364735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020780 | RBH | 2.919827 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020370 | RBH | 0.422399 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020500 | RBH | 0.114692 | 3.430185 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020450 | RBH | 0.0 | 0.0 | 0.186801 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020830 | RBH | 0.0 | 0.0 | 0.0 |
