Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019700 | OGI:11067010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:25082247-25082822 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagcAaaaactagcctccaaaaccctaatgaactctaccatatctatcctcctatctctgttcatgtcatatttggcaatcatttgttcacactcatcaacccctacaccttctcttaatcctagattcctaaggactctatacaaatccaatgcatcaatgtagccatcattatcctcatcaaacaccaaaaatgcctgctttacttcgtccaagctcggttcatcgtcatcgaacaactctgacatgcagttagaaccaatcgccttgtaaaccatagttcttccgtgatcaaaatcaagccccatctttgtcatcacagactcaacatcttcatgtgtcatctctatcccatcatctctatgcttacttagattctttgatatctttctgtcggcgagaaccggtgtcgaggtcaccttggagacgacacaattgcagtgttggcaagaactagggaggatcatctgaaccttcgagatgaaccaggtAaacatggtgaagaggatgaggaggcaaaccggttcttgggactccagttccgggaggaagtacatggtcggtgacttctccat
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| CDS seq | atggagaagtcaccgaccatgtacttcctcccggaactggagtcccaagaaccggtttgcctcctcatcctcttcaccatgttTacctggttcatctcgaaggttcagatgatcctccctagttcttgccaacactgcaattgtgtcgtctccaaggtgacctcgacaccggttctcgccgacagaaagatatcaaagaatctaagtaagcatagagatgatgggatagagatgacacatgaagatgttgagtctgtgatgacaaagatggggcttgattttgatcacggaagaactatggtttacaaggcgattggttctaactgcatgtcagagttgttcgatgacgatgaaccgagcttggacgaagtaaagcaggcatttttggtgtttgatgaggataatgatggctacattgatgcattggatttgtatagagtccttaggaatctaggattaagagaaggtgtaggggttgatgagtgtgaacaaatgattgccaaatatgacatgaacagagataggaggatagatatggtagagttcattagggttttggaggctagttttTgctga
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| Protein seq | MEKSPTMYFLPELESQEPVCLLILFTMFTWFISKVQMILPSSCQHCNCVVSKVTSTPVLADRKISKNLSKHRDDGIEMTHEDVESVMTKMGLDFDHGRTMVYKAIGSNCMSELFDDDEPSLDEVKQAFLVFDEDNDGYIDALDLYRVLRNLGLREGVGVDECEQMIAKYDMNRDRRIDMVEFIRVLEASFC |
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| Function | Probable calcium-binding protein CML46 [UniProtKB/Swiss-Prot:Q93Z27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019700 | OsLima_11g0019700.01 | Chr11 | 25082247 | 25082822 | - | NAM | ||
| CDS seq | atggagaagtcaccgaccatgtacttcctcccggaactggagtcccaagaaccggtttgcctcctcatcctcttcaccatgttTacctggttcatctcgaaggttcagatgatcctccctagttcttgccaacactgcaattgtgtcgtctccaaggtgacctcgacaccggttctcgccgacagaaagatatcaaagaatctaagtaagcatagagatgatgggatagagatgacacatgaagatgttgagtctgtgatgacaaagatggggcttgattttgatcacggaagaactatggtttacaaggcgattggttctaactgcatgtcagagttgttcgatgacgatgaaccgagcttggacgaagtaaagcaggcatttttggtgtttgatgaggataatgatggctacattgatgcattggatttgtatagagtccttaggaatctaggattaagagaaggtgtaggggttgatgagtgtgaacaaatgattgccaaatatgacatgaacagagataggaggatagatatggtagagttcattagggttttggaggctagttttTgctga
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| Protein seq | MEKSPTMYFLPELESQEPVCLLILFTMFTWFISKVQMILPSSCQHCNCVVSKVTSTPVLADRKISKNLSKHRDDGIEMTHEDVESVMTKMGLDFDHGRTMVYKAIGSNCMSELFDDDEPSLDEVKQAFLVFDEDNDGYIDALDLYRVLRNLGLREGVGVDECEQMIAKYDMNRDRRIDMVEFIRVLEASFC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0600500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0600500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019400 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019340 | RBH | 0.0 | 3.870596 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019430 | RBH | 0.0 | 5.994964 | 1.963122 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0353200 | RBH | 0.1131975 | 0.584964 | 1.21053 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019900 | RBH | 0.0 | 0.278468 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0366300 | RBH | 0.4806395 | 5.646946 | 1.8715465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019280 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019650 | RBH | 0.0 | 0.0 | 0.0 |
