Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019270 | OGI:11065580 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24709783-24717214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGCAGGCGATGGCGGGGTGCGGCGGCGACGGTGGACCGCTCCCTCTCCCTCCCGTCGGCACGGCGCGGGCGACGGCGACGGCTGGGTGCGGGGTGCGGGCGGCGCGGCGACGGCGGGGTGCGGCGGAGACGGCGGAGATGGCCGTCCCTCCCTCCCTCTCCCCGTCGGCCTCGACGGCGACGACGCCCTCTCAACGGTGGCGTCGATGGCGTTGGCTTCGTCCGAGGGTGGATCCGTCAGCGGTGGCGGCCACCGCGGGCAATCCGGCAGCGGCGCTCCCTCCGCCGCCTCTCTTCTCCCTCCGGCGGCGGTGGAGGCGCgtcggcggccgccgatttttttttctttgcaattttttttccatggctattgctaaccgaatcggattgtgtatggacgaaaaacggacgaaaattagatgtgacgaccggaaaaatacgaatatttatattagttatagattaagataacTttgaaaggagtcacaactgttcgCTtttttttcatggcgttgaggtagtagctgcataggtgccctccctcgccctggattcccttcacacgtgcaccaggtctcagggccgtgcacgtgggcgtgtgagccgtgtgaccgtacagggcctaaaaaaatccgcccaaagagagaaggccaatgtattcgtgtgaggctagagcgacagaaacccgttcgagtccacgcgtgtctccgcatggtgacttcgcatgcgtggcgctttgtattctcgactccgagccccgaggccccacagccttttgtattatctttcgttttcgtatctgtgacttattcaattcgtcttgagtctgaacgtctcgtctcctccgagcgccaggctgccagccagctcctccaattttatattttcattcatccagcgaatagcaagttagcaagcaagcaaccaacatgcaaggcactaggcagcaagccagcaacagcaacgaatattctccgtttttagtttgacagtttctgattatgcaagacaagagttaaaaaatgtactattcttaatatatcgcatttgctctgtagtatatacattattttagctatatttgatacctgatttaggcctcacttagagccttgtacatggcctgtaaacttaacggcacggccctgccaggtcgcaccggcacagccgccctCccgtacacgcccacatgccgtcgtcgccgctccagtgctttctgtcaccacttcggccaaggtgaagaaaaaaggagagagggaggaagaaggagagaagatagcaTGtgggtcccataatttttttttgtgtgaatgacaaatggtccacacattttttttaattctaatttaacaaaagcatcacatcaacgccacgtggaacgaaacatggccaatatcgtcatataggcgccacgtcggcgaaaccgcccttcaaaaccaccaagagagttaaattacactggttttaatagttgggggtcaagatatctggtattatggtttagggttagggatattaattagattcgaccactagttaaggGAgtcaaaatgaacttattccagaaaaaaaatagaaacgaggacgggatccaacacggtccataaccataactgatacggagtcgaggcccagcccagaaggcatcgtctcttcccggagccgttccgtgtcgattggactcgactcgagcgccgtcttctcctggtcctggacgcggcgcggcgtcgggttccgtacttccgtctcgagcgacgccgccggcgacaaccgcttcctcgcgacctcccgccgccggcgaggaaacctcgtcttggtgagtgcccgtctccacttctcactggtagaccatatccttgtcttgatctaaccctagcccgcccgcccttgcacaggtcctccaagttcaaggtatcgagctatgggataatcccgaattcccgatcgatttcgattctatttgcacggtatgttcttcaccctctcatcaatttctcgctattcgtttaatttcctgctatccgtaattcaatacccatggtttcctgctatccacattcaatccccatggtgttctactgttctctagtgttgggaagatggagaggggtggggagatggatcctcccatcactgcctcgctgggagccattcatattgtttttgggaaactggtccggttgctctctgagcctggactgcggctgcacaaggaagggatgaaagcgctaggtgtgctcaaagacggcctccaagttttgatagaagattatctgatggaaccatcagatctggagggccctgccttcaaggctaactactggatgaaggaggtgcgggagctgtgctacgacatcgacgactttgttgatgagcttttccatgctgccgctaatgtcaagatccaaagagctctccagtttaaggcttctccactccggaagaaattgcccctctttaagacttctcagctccaggagaagttatcccgcttcaacgcttctcagctccagaagaaattgtcatggaggcaaaaaattgttgatgaggtctcaagtttcagttcttgcttgaaggaattgattatgctttataagcgttatgatcttggcagtttagagagacgttccgggtgggaatcaaatggaacaatgtctttaactctcccgttagctgaagagactagccaacgctgctacctcggtatggacaaagatatggataaacttgttgggttactaaatgatgggcagcaagaatgcaaggtcattgctatcattggactttctggtgttggcaagaccacccttgctgaagaactttatcagaagtttggatttcagtttcaatgttgtgcctttctaaggttatctcggaaacctgacatgaagagggtgctaggtagtttattctcacaagttcgacagcatgatcctcctggtactgttgaggtggataatttatcccatgagatcaagtcatatctgaatgacaaaaggtaaaaatgttgagtttctttcTtttaattggcttatcattttgataatttaATTTattagcTttaattgttcattttccatttttagtaattgatttcctccatttagtaacttgtttattagattttttttgatcgttgggtatagatcctgcggtcaaaaaaaaatctgactactttaagccctggtttatatcgccacttatttagatggtcccttattttttgagactctgggttagctaaattatgacttttggcaggtaTtttattgtaattgatggtgtttggtcatcatatatatggaacactatcaatcagactttgccaaagaatttttacagtagaatattgataactacagaaattgatcatgtagctcagaggtgctgtgttgataaccgcaaatacatctttaagaaggaaccatttaataaagttgaatctgatgaattcttcagcagagtccatgagtcaaaaaatgctgaatatctaaaggaaatttcttctgagattgcacaactctgtagtggcttaccgctcatgatggctattgtagctagtattttaacacgattgccaccaagcacagagcaatggaatgttgtAaaaaaatcattgagttctaaattggaagggattttggacctcatttacaacattcttcctcatcctttgaaagcctgcatgctttatcttggaatatatgaagaagatgatatagttttaaaaaatgaactgttgagtcaatggtttgcagaaggatttattgatacagttgatggaaatgaggaggagagggttggattgatctattttgatgagcttatcagctatgggctaatacaacctgtagagaccaggtttgataatgaagtgttgtcctttagagtgcattacatgataattgattatattcggtttaaggcagtccagcacaattttgccattgcaattgataatcatcagacagatgtgcgaattgctgataagattcgtcggttgtcccttcgttttggcaatgcaaatgatgtgacaacaccaattgggttgagatggtcacaagttcgcacgcttgtcttttttggacctctccgctgtacaccttctattgctgagtttagagttcttcgagttctgatccttcgattatctgctgatgatgatgatgtaacttatgacctctcagaaattgctgagttgcttggattaaagtatctgtatattgatgcatgccatctgaatataaggctaccaatgcagatGCgacagttgcaatatttggcaaagttaaaaatagaagcaagattgagttatgttccatcagatattttttatttgccacgattgcaacagttgattcttccaagtgagactactttgccccatttcactgagccgatgaagtctcttcatactttagggtgttttgatctcagcgggagctcaacagaaagtattgtggatattgggaagatggtaaatcttcaaaatcttcacatgACatgttctagtggacagcctgccaatctgaaacttctagggtctgttctcaataaactcaaaaatatgaagtctctaattctggtagttactggttcattggatgatgctgattcttcaattatggaaatttcttctgatgacttcagtgtttcatctcctccggttcttctgacaaggtttgaaTtttcatggcgctcatgcatattttcatgcctacctaggtggatcaaagaactgaacaatctcagtatcttgaagattgccattagtgagatgtcgggacatgatgttgatgttcttagtgtgttacctgcactcacttctctctctgtgtatatccaaagagcacctgaggaaaggatcagttttggtaaaggaggattcgcagctttgaagtactttaaactcaagtgcactgtaccttggctcaaagttgaggtagatgcaatgcctaatcttgaaaaactgaagctaaggttcaatgttggtctcagtctgcaaagagtggggggtctgcatggaaaTaaccttatcaacattgagcacttgtcaaggcttaaggagatatatgcaaaagtggagagtgaaggttctgttgatgcagggtctgctttgatgactggtgtttggaatgatccaagaaatcctacaattaccattcaattgatttatggtttctatggtgaaatgactagacgaatgacaaaagatgatattatcttggaagaaaatccagacagcataactgaggatgaggtcagacacaaggatgagaagaaacaagtggatgatcacaggtttcaatttttcgcttctttactttggtttcactttttgaacctaattactcgtgtaattcctattataatgcagctaattggtgtttgtaattaggacttatatgacatcagaggctagtcctgcacttcctcgaagacatattgctcatgaaatcccacggcttcttccttcatgtggtgggaaatggcccacctctaatgctgcctttgaaggccacaaccttgtgaactgctatgctggcaacctctccatcgctgtcatccaagccaataattccttcaaggagcaataccgtgttgagtcatcccaacccttcggcaccgtcattggcatcttcgatggacatggtggctccgaagctgcccaatttgcttgtgacaacctcttcctccacctccaaggtgagtgaatccccaactgcaagcactgactatcatacatattatgttgaattattgatgtgacacgagttatttggtttgatctgtgtgtgcagagaatttgtcgagctcacaacgtgtgacaactgatgctatcagcaaagcattcaaggccactgaagaagggttcattgagcttgtgtctcgccaatggaaaaccgatccacaaattgcaactgttggggcatgctgccttgttggtgctgtgcaACaaaaaaCactattcatagccaaccttggaaactctcgggctgttcttggaaagatcaattgcactgggcagattgttgctgaacagctctctagtgagcacattgccaatgatgcatggaaagcaaagggcctcgtacaggtcagctttatgttaccatttcatttgtgtcacaatatttgaatcttatatgttctacttatgcattgtatgcatgatgcaggtgttgagagctataggtgatgcatacttgaaacacccacagtatagcagggaaccactcaacaaaccaatactaagtgccaatccatctattgtttcacgcgttcttcgaccaagtgaccgcttcatcatatttggctcagctgttctatgggaatatttgtccaatcaggaagctgttgagattgttaaaaaccatcaagcttctgtaagcttccaactatctattttctcaccttcatcttgTttTATATAGTGCTTCATTTAAATTGTTTAGCTTTCTTATGTTGTCAATAATGACTAAAACCAGTCAATTTACAAAACGTTTGTGCTGTGCCTATGCCTTGCAAAAAAGTTTACGCACAGTAAAAAGGCTTAGGCATATAGCAATATTTGAGATTCTGATACGCCTATGTGCCCCCCCCCCCTCCCACACACACACACACACACACAAAAAAAAGAAAAAAATGATGTTCACTCATTTGGTTCACGTGGTATGACTGTATTAGCTATATGCAAATTGTAGCTGTATCACTCATTGCGCTCCTGTAGTTCCATAAATTAACTAAAATGTAGGTCCAAGTGATGTTACTAAGTACTGTGGGTCCATACTAATACTAAATGTTATTAATTACATGGAAAGAACACCAATTTTTATGTTCAAGTACTCGAGATTTATAGCCTGCTGCAGTATATGATCAAGATTTATTTACATGCAAAAAAAATAAAAAGAGTTCTGTTTAGCATGAAAACAGTGCTGGTAGTATGCTTGCCTTGTAATATAATTTTAGTGCCCATCCTCCACAGTCATTCAGGATTCAGGATGAAAACATGTTTCTGTTAGTTGACTTTTCTCAATTCAGGCTTGAGAGGTGTATAATGGATTCTTTTTCCATTTAGTTACCTGTGTTCTAAGGCATACAATACATATTTGTGTTttggtactctggttcttgatgacctaaaaggctgcaagtttgctgctatggccataaatgttactgctgctaacttcgttctgttctgttcagggaagtgccaaaatgctagtaaaagcagctcttcatgcagcagccAaaaagcacaacttgcattactcagatctcttgaagatggacagggatgatcctaggcatgtccatgaggatgtaattgccgtagtcttatttataaactatgatcaattactgaaagggaaacaagggcggcctctttccatcagATaccctagatccatacaacatggattag
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| CDS seq | ATGGCGCAGGCGATGGCGGGGTGCGGCGGCGACGGTGGACCGCTCCCTCTCCCTCCCGTCGGCACGGCGCGGGCGACGGCGACGGCTGGGTGCGGGGTGCGGGCGGCGCGGCGACGGCGGGGTGCGGCGGAGACGGCGGAGATGGCCGTCCCTCCCTCCCTCTCCCCGTCGGCCTCGACGGCGACGACGCCCTCTCAACGGTGGCGTCGATGGCGTTGGCTTCGTCCGAGGGTGGATCCGTCAGCGGTGGCGGCCACCGCGGGCAATCCGGCAGCGGCGCTCCCTCCGCCGCCTCTCTTCTCCCTCCGGCGGCGccgttccgtgtcgattggactcgactcgagcgccgtcttctcctggtcctggacgcggcgcggcgtcgggttccgtacttccgtctcgagcgacgccgccggcgacaaccgcttcctcgcgacctcccgccgccggcgaggaaacctcgtcttggtcctccaagttcaaggtatcgagctatgggataatcccgaattcccgatcgatttcgattctatttgcacgatggagaggggtggggagatggatcctcccatcactgcctcgctgggagccattcatattgtttttgggaaactggtccggttgctctctgagcctggactgcggctgcacaaggaagggatgaaagcgctaggtgtgctcaaagacggcctccaagttttgatagaagattatctgatggaaccatcagatctggagggccctgccttcaaggctaactactggatgaaggaggtgcgggagctgtgctacgacatcgacgactttgttgatgagcttttccatgctgccgctaatgtcaagatccaaagagctctccagtttaaggcttctccactccggaagaaattgcccctctttaagacttctcagctccaggagaagttatcccgcttcaacgcttctcagctccagaagaaattgtcatggaggcaaaaaattgttgatgaggtctcaagtttcagttcttgcttgaaggaattgattatgctttataagcgttatgatcttggcagtttagagagacgttccgggtgggaatcaaatggaacaatgtctttaactctcccgttagctgaagagactagccaacgctgctacctcggtatggacaaagatatggataaacttgttgggttactaaatgatgggcagcaagaatgcaaggtcattgctatcattggactttctggtgttggcaagaccacccttgctgaagaactttatcagaagtttggatttcagtttcaatgttgtgcctttctaaggttatctcggaaacctgacatgaagagggtgctaggtagtttattctcacaagttcgacagcatgatcctcctggtactgttgaggtggataatttatcccatgagatcaagtcatatctgaatgacaaaagtagaatattgataactacagaaattgatcatgtagctcagaggtgctgtgttgataaccgcaaatacatctttaagaaggaaccatttaataaagttgaatctgatgaattcttcagcagagtccatgagtcaaaaaatgctgaatatctaaaggaaatttcttctgagattgcacaactctgtagtggcttaccgctcatgatggctattgtagctagtattttaacacgattgccaccaagcacagagcaatggaatgttgtAaaaaaatcattgagttctaaattggaagggattttggacctcatttacaacattcttcctcatcctttgaaagcctgcatgctttatcttggaatatatgaagaagatgatatagttttaaaaaatgaactgttgagtcaatggtttgcagaaggatttattgatacagttgatggaaatgaggaggagagggttggattgatctattttgatgagcttatcagctatgggctaatacaacctgtagagaccaggtttgataatgaagtgttgtcctttagagtgcattacatgataattgattatattcggtttaaggcagtccagcacaattttgccattgcaattgataatcatcagacagatgtgcgaattgctgataagattcgtcggttgtcccttcgttttggcaatgcaaatgatgtgacaacaccaattgggttgagatggtcacaagttcgcacgcttgtcttttttggacctctccgctgtacaccttctattgctgagtttagagttcttcgagttctgatccttcgattatctgctgatgatgatgatgtaacttatgacctctcagaaattgctgagttgcttggattaaagtatctgtatattgatgcatgccatctgaatataaggctaccaatgcagatGCgacagttgcaatatttggcaaagttaaaaatagaagcaagattgagttatgttccatcagatattttttatttgccacgattgcaacagttgattcttccaagtgagactactttgccccatttcactgagccgatgaagtctcttcatactttagggtgttttgatctcagcgggagctcaacagaaagtattgtggatattgggaagatggtaaatcttcaaaatcttcacatgACatgttctagtggacagcctgccaatctgaaacttctagggtctgttctcaataaactcaaaaatatgaagtctctaattctggtagttactggttcattggatgatgctgattcttcaattatggaaatttcttctgatgacttcagtgtttcatctcctccggttcttctgacaaggtttgaaTtttcatggcgctcatgcatattttcatgcctacctaggtggatcaaagaactgaacaatctcagtatcttgaagattgccattagtgagatgtcgggacatgatgttgatgttcttagtgtgttacctgcactcacttctctctctgtgtatatccaaagagcacctgaggaaaggatcagttttggtaaaggaggattcgcagctttgaagtactttaaactcaagtgcactgtaccttggctcaaagttgaggtagatgcaatgcctaatcttgaaaaactgaagctaaggttcaatgttggtctcagtctgcaaagagtggggggtctgcatggaaaTaaccttatcaacattgagcacttgtcaaggcttaaggagatatatgcaaaagtggagagtgaaggttctgttgatgcagggtctgctttgatgactggtgtttggaatgatccaagaaatcctacaattaccattcaattgatttatggtttctatggtgaaatgactagacgaatgacaaaagatgatattatcttggaagaaaatccagacagcataactgaggatgaggtcagacacaaggatgagaagaaacaagtggatgatcacaggacttatatgacatcagaggctagtcctgcacttcctcgaagacatattgctcatgaaatcccacggcttcttccttcatgtggtgggaaatggcccacctctaatgctgcctttgaaggccacaaccttgtgaactgctatgctggcaacctctccatcgctgtcatccaagccaataattccttcaaggagcaataccgtgttgagtcatcccaacccttcggcaccgtcattggcatcttcgatggacatggtggctccgaagctgcccaatttgcttgtgacaacctcttcctccacctccaagagaatttgtcgagctcacaacgtgtgacaactgatgctatcagcaaagcattcaaggccactgaagaagggttcattgagcttgtgtctcgccaatggaaaaccgatccacaaattgcaactgttggggcatgctgccttgttggtgctgtgcaACaaaaaaCactattcatagccaaccttggaaactctcgggctgttcttggaaagatcaattgcactgggcagattgttgctgaacagctctctagtgagcacattgccaatgatgcatggaaagcaaagggcctcgtacaggtgttgagagctataggtgatgcatacttgaaacacccacagtatagcagggaaccactcaacaaaccaatactaagtgccaatccatctattgtttcacgcgttcttcgaccaagtgaccgcttcatcatatttggctcagctgttctatgggaatatttgtccaatcaggaagctgttgagattgttaaaaaccatcaagcttctggaagtgccaaaatgctagtaaaagcagctcttcatgcagcagccAaaaagcacaacttgcattactcagatctcttgaagatggacagggatgatcctaggcatgtccatgaggatggaaacaagggcggcctctttccatcagATaccctagatccatacaacatggattag
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| Protein seq | MAQAMAGCGGDGGPLPLPPVGTARATATAGCGVRAARRRRGAAETAEMAVPPSLSPSASTATTPSQRWRRWRWLRPRVDPSAVAATAGNPAAALPPPPLFSLRRRRSVSIGLDSSAVFSWSWTRRGVGFRTSVSSDAAGDNRFLATSRRRRGNLVLVLQVQGIELWDNPEFPIDFDSICTMERGGEMDPPITASLGAIHIVFGKLVRLLSEPGLRLHKEGMKALGVLKDGLQVLIEDYLMEPSDLEGPAFKANYWMKEVRELCYDIDDFVDELFHAAANVKIQRALQFKASPLRKKLPLFKTSQLQEKLSRFNASQLQKKLSWRQKIVDEVSSFSSCLKELIMLYKRYDLGSLERRSGWESNGTMSLTLPLAEETSQRCYLGMDKDMDKLVGLLNDGQQECKVIAIIGLSGVGKTTLAEELYQKFGFQFQCCAFLRLSRKPDMKRVLGSLFSQVRQHDPPGTVEVDNLSHEIKSYLNDKSRILITTEIDHVAQRCCVDNRKYIFKKEPFNKVESDEFFSRVHESKNAEYLKEISSEIAQLCSGLPLMMAIVASILTRLPPSTEQWNVVKKSLSSKLEGILDLIYNILPHPLKACMLYLGIYEEDDIVLKNELLSQWFAEGFIDTVDGNEEERVGLIYFDELISYGLIQPVETRFDNEVLSFRVHYMIIDYIRFKAVQHNFAIAIDNHQTDVRIADKIRRLSLRFGNANDVTTPIGLRWSQVRTLVFFGPLRCTPSIAEFRVLRVLILRLSADDDDVTYDLSEIAELLGLKYLYIDACHLNIRLPMQMRQLQYLAKLKIEARLSYVPSDIFYLPRLQQLILPSETTLPHFTEPMKSLHTLGCFDLSGSSTESIVDIGKMVNLQNLHMTCSSGQPANLKLLGSVLNKLKNMKSLILVVTGSLDDADSSIMEISSDDFSVSSPPVLLTRFEFSWRSCIFSCLPRWIKELNNLSILKIAISEMSGHDVDVLSVLPALTSLSVYIQRAPEERISFGKGGFAALKYFKLKCTVPWLKVEVDAMPNLEKLKLRFNVGLSLQRVGGLHGNNLINIEHLSRLKEIYAKVESEGSVDAGSALMTGVWNDPRNPTITIQLIYGFYGEMTRRMTKDDIILEENPDSITEDEVRHKDEKKQVDDHRTYMTSEASPALPRRHIAHEIPRLLPSCGGKWPTSNAAFEGHNLVNCYAGNLSIAVIQANNSFKEQYRVESSQPFGTVIGIFDGHGGSEAAQFACDNLFLHLQENLSSSQRVTTDAISKAFKATEEGFIELVSRQWKTDPQIATVGACCLVGAVQQKTLFIANLGNSRAVLGKINCTGQIVAEQLSSEHIANDAWKAKGLVQVLRAIGDAYLKHPQYSREPLNKPILSANPSIVSRVLRPSDRFIIFGSAVLWEYLSNQEAVEIVKNHQASGSAKMLVKAALHAAAKKHNLHYSDLLKMDRDDPRHVHEDGNKGGLFPSDTLDPYNMD |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019270 | OsLima_11g0019270.01 | Chr11 | 24709783 | 24717214 | + | NAM | ||
| CDS seq | ATGGCGCAGGCGATGGCGGGGTGCGGCGGCGACGGTGGACCGCTCCCTCTCCCTCCCGTCGGCACGGCGCGGGCGACGGCGACGGCTGGGTGCGGGGTGCGGGCGGCGCGGCGACGGCGGGGTGCGGCGGAGACGGCGGAGATGGCCGTCCCTCCCTCCCTCTCCCCGTCGGCCTCGACGGCGACGACGCCCTCTCAACGGTGGCGTCGATGGCGTTGGCTTCGTCCGAGGGTGGATCCGTCAGCGGTGGCGGCCACCGCGGGCAATCCGGCAGCGGCGCTCCCTCCGCCGCCTCTCTTCTCCCTCCGGCGGCGccgttccgtgtcgattggactcgactcgagcgccgtcttctcctggtcctggacgcggcgcggcgtcgggttccgtacttccgtctcgagcgacgccgccggcgacaaccgcttcctcgcgacctcccgccgccggcgaggaaacctcgtcttggtcctccaagttcaaggtatcgagctatgggataatcccgaattcccgatcgatttcgattctatttgcacgatggagaggggtggggagatggatcctcccatcactgcctcgctgggagccattcatattgtttttgggaaactggtccggttgctctctgagcctggactgcggctgcacaaggaagggatgaaagcgctaggtgtgctcaaagacggcctccaagttttgatagaagattatctgatggaaccatcagatctggagggccctgccttcaaggctaactactggatgaaggaggtgcgggagctgtgctacgacatcgacgactttgttgatgagcttttccatgctgccgctaatgtcaagatccaaagagctctccagtttaaggcttctccactccggaagaaattgcccctctttaagacttctcagctccaggagaagttatcccgcttcaacgcttctcagctccagaagaaattgtcatggaggcaaaaaattgttgatgaggtctcaagtttcagttcttgcttgaaggaattgattatgctttataagcgttatgatcttggcagtttagagagacgttccgggtgggaatcaaatggaacaatgtctttaactctcccgttagctgaagagactagccaacgctgctacctcggtatggacaaagatatggataaacttgttgggttactaaatgatgggcagcaagaatgcaaggtcattgctatcattggactttctggtgttggcaagaccacccttgctgaagaactttatcagaagtttggatttcagtttcaatgttgtgcctttctaaggttatctcggaaacctgacatgaagagggtgctaggtagtttattctcacaagttcgacagcatgatcctcctggtactgttgaggtggataatttatcccatgagatcaagtcatatctgaatgacaaaagtagaatattgataactacagaaattgatcatgtagctcagaggtgctgtgttgataaccgcaaatacatctttaagaaggaaccatttaataaagttgaatctgatgaattcttcagcagagtccatgagtcaaaaaatgctgaatatctaaaggaaatttcttctgagattgcacaactctgtagtggcttaccgctcatgatggctattgtagctagtattttaacacgattgccaccaagcacagagcaatggaatgttgtAaaaaaatcattgagttctaaattggaagggattttggacctcatttacaacattcttcctcatcctttgaaagcctgcatgctttatcttggaatatatgaagaagatgatatagttttaaaaaatgaactgttgagtcaatggtttgcagaaggatttattgatacagttgatggaaatgaggaggagagggttggattgatctattttgatgagcttatcagctatgggctaatacaacctgtagagaccaggtttgataatgaagtgttgtcctttagagtgcattacatgataattgattatattcggtttaaggcagtccagcacaattttgccattgcaattgataatcatcagacagatgtgcgaattgctgataagattcgtcggttgtcccttcgttttggcaatgcaaatgatgtgacaacaccaattgggttgagatggtcacaagttcgcacgcttgtcttttttggacctctccgctgtacaccttctattgctgagtttagagttcttcgagttctgatccttcgattatctgctgatgatgatgatgtaacttatgacctctcagaaattgctgagttgcttggattaaagtatctgtatattgatgcatgccatctgaatataaggctaccaatgcagatGCgacagttgcaatatttggcaaagttaaaaatagaagcaagattgagttatgttccatcagatattttttatttgccacgattgcaacagttgattcttccaagtgagactactttgccccatttcactgagccgatgaagtctcttcatactttagggtgttttgatctcagcgggagctcaacagaaagtattgtggatattgggaagatggtaaatcttcaaaatcttcacatgACatgttctagtggacagcctgccaatctgaaacttctagggtctgttctcaataaactcaaaaatatgaagtctctaattctggtagttactggttcattggatgatgctgattcttcaattatggaaatttcttctgatgacttcagtgtttcatctcctccggttcttctgacaaggtttgaaTtttcatggcgctcatgcatattttcatgcctacctaggtggatcaaagaactgaacaatctcagtatcttgaagattgccattagtgagatgtcgggacatgatgttgatgttcttagtgtgttacctgcactcacttctctctctgtgtatatccaaagagcacctgaggaaaggatcagttttggtaaaggaggattcgcagctttgaagtactttaaactcaagtgcactgtaccttggctcaaagttgaggtagatgcaatgcctaatcttgaaaaactgaagctaaggttcaatgttggtctcagtctgcaaagagtggggggtctgcatggaaaTaaccttatcaacattgagcacttgtcaaggcttaaggagatatatgcaaaagtggagagtgaaggttctgttgatgcagggtctgctttgatgactggtgtttggaatgatccaagaaatcctacaattaccattcaattgatttatggtttctatggtgaaatgactagacgaatgacaaaagatgatattatcttggaagaaaatccagacagcataactgaggatgaggtcagacacaaggatgagaagaaacaagtggatgatcacaggacttatatgacatcagaggctagtcctgcacttcctcgaagacatattgctcatgaaatcccacggcttcttccttcatgtggtgggaaatggcccacctctaatgctgcctttgaaggccacaaccttgtgaactgctatgctggcaacctctccatcgctgtcatccaagccaataattccttcaaggagcaataccgtgttgagtcatcccaacccttcggcaccgtcattggcatcttcgatggacatggtggctccgaagctgcccaatttgcttgtgacaacctcttcctccacctccaagagaatttgtcgagctcacaacgtgtgacaactgatgctatcagcaaagcattcaaggccactgaagaagggttcattgagcttgtgtctcgccaatggaaaaccgatccacaaattgcaactgttggggcatgctgccttgttggtgctgtgcaACaaaaaaCactattcatagccaaccttggaaactctcgggctgttcttggaaagatcaattgcactgggcagattgttgctgaacagctctctagtgagcacattgccaatgatgcatggaaagcaaagggcctcgtacaggtgttgagagctataggtgatgcatacttgaaacacccacagtatagcagggaaccactcaacaaaccaatactaagtgccaatccatctattgtttcacgcgttcttcgaccaagtgaccgcttcatcatatttggctcagctgttctatgggaatatttgtccaatcaggaagctgttgagattgttaaaaaccatcaagcttctggaagtgccaaaatgctagtaaaagcagctcttcatgcagcagccAaaaagcacaacttgcattactcagatctcttgaagatggacagggatgatcctaggcatgtccatgaggatggaaacaagggcggcctctttccatcagATaccctagatccatacaacatggattag
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| Protein seq | MAQAMAGCGGDGGPLPLPPVGTARATATAGCGVRAARRRRGAAETAEMAVPPSLSPSASTATTPSQRWRRWRWLRPRVDPSAVAATAGNPAAALPPPPLFSLRRRRSVSIGLDSSAVFSWSWTRRGVGFRTSVSSDAAGDNRFLATSRRRRGNLVLVLQVQGIELWDNPEFPIDFDSICTMERGGEMDPPITASLGAIHIVFGKLVRLLSEPGLRLHKEGMKALGVLKDGLQVLIEDYLMEPSDLEGPAFKANYWMKEVRELCYDIDDFVDELFHAAANVKIQRALQFKASPLRKKLPLFKTSQLQEKLSRFNASQLQKKLSWRQKIVDEVSSFSSCLKELIMLYKRYDLGSLERRSGWESNGTMSLTLPLAEETSQRCYLGMDKDMDKLVGLLNDGQQECKVIAIIGLSGVGKTTLAEELYQKFGFQFQCCAFLRLSRKPDMKRVLGSLFSQVRQHDPPGTVEVDNLSHEIKSYLNDKSRILITTEIDHVAQRCCVDNRKYIFKKEPFNKVESDEFFSRVHESKNAEYLKEISSEIAQLCSGLPLMMAIVASILTRLPPSTEQWNVVKKSLSSKLEGILDLIYNILPHPLKACMLYLGIYEEDDIVLKNELLSQWFAEGFIDTVDGNEEERVGLIYFDELISYGLIQPVETRFDNEVLSFRVHYMIIDYIRFKAVQHNFAIAIDNHQTDVRIADKIRRLSLRFGNANDVTTPIGLRWSQVRTLVFFGPLRCTPSIAEFRVLRVLILRLSADDDDVTYDLSEIAELLGLKYLYIDACHLNIRLPMQMRQLQYLAKLKIEARLSYVPSDIFYLPRLQQLILPSETTLPHFTEPMKSLHTLGCFDLSGSSTESIVDIGKMVNLQNLHMTCSSGQPANLKLLGSVLNKLKNMKSLILVVTGSLDDADSSIMEISSDDFSVSSPPVLLTRFEFSWRSCIFSCLPRWIKELNNLSILKIAISEMSGHDVDVLSVLPALTSLSVYIQRAPEERISFGKGGFAALKYFKLKCTVPWLKVEVDAMPNLEKLKLRFNVGLSLQRVGGLHGNNLINIEHLSRLKEIYAKVESEGSVDAGSALMTGVWNDPRNPTITIQLIYGFYGEMTRRMTKDDIILEENPDSITEDEVRHKDEKKQVDDHRTYMTSEASPALPRRHIAHEIPRLLPSCGGKWPTSNAAFEGHNLVNCYAGNLSIAVIQANNSFKEQYRVESSQPFGTVIGIFDGHGGSEAAQFACDNLFLHLQENLSSSQRVTTDAISKAFKATEEGFIELVSRQWKTDPQIATVGACCLVGAVQQKTLFIANLGNSRAVLGKINCTGQIVAEQLSSEHIANDAWKAKGLVQVLRAIGDAYLKHPQYSREPLNKPILSANPSIVSRVLRPSDRFIIFGSAVLWEYLSNQEAVEIVKNHQASGSAKMLVKAALHAAAKKHNLHYSDLLKMDRDDPRHVHEDGNKGGLFPSDTLDPYNMD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.372636 | 0.082250 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0592500 | RBH | 1.378646 | 2.054198 | 3.572486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38000 | RBH | 0.951243 | 1.040434 | 0.710578 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0592500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018950 | RBH | 0.610885 | 8.822546 | 1.994030 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019130 | RBH | 0.116083 | 0.485475 | 1.704664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018940 | RBH | 0.859740 | 5.067581 | 4.423701 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018640 | RBH | 0.387979 | 0.122639 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018900 | RBH | 4.652048 | 5.587349 | 14.969735 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0346800 | RBH | 4.574145 | 13.658653 | 16.609958 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019460 | RBH | 0.313898 | 0.041075 | 1.635165 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0359600 | RBH | 4.8730905 | 13.5585835 | 18.8810665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019140 | SBH | 0.137511 | 0.276715 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019410 | RBH | 0.430818 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018910 | RBH | 8.965060 | 17.897671 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018580 | RBH | 0.278849 | 0.0 | 0.586516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018740 | RBH | 0.150249 | 1.709918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018910 | RBH | 0.764270 | 3.116920 | 2.230058 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019180 | RBH | 2.921905 | 24.929131 | 5.899839 |
