Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0018990 | OGI:11065120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24385031-24387719 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccatgtcttagtgatccatctggaatggagttcgctacaGGggtaatgagcacgcttctttccaagctagcggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggagggggtaacatttctcatggctgagctcaagagcatacaagctgcacttgaaaaggtctcaaaggtgccgctagACCAacttgatgagcaaaccaagatctgggcttgggacattagggagttgtcctatgacatggaggacaacattgataccttcatgctacgtgtggatggtcttgagccagccaagaaacataatttcacatgcttagttgacaagtgccaaaagtctttgtccaagataaagatctgctacaaaatagccaatgaaattaaagatatcaagagccaagtAaaggaggtgatgaacgacgcgataggtacaagattgatgatgtcgctactaaccttccaacatttgtggatcctcgcatcttgacattatatgggaatgtcacgaagcttgttgggattgacaaggcaaGggatgatctaatgaagagattgtctgtgggggatgaagcgctcaagaagctcaagatggtctctgttgtcggaattggaggattgggcaagacaactccttccAaagtagtgtttgacatgcttaaattgcaatttgattgtgctgcttttgttcctgtcggtcaaagccctgaaatcaagaaagtcctaaaggacattctagttgaacttaacaagcaaaagtacatgtcatttgatgttaccgcagtaagtgaaaggcatatgattaatgagcttcgagaataccttgacaataagaggtaagtgtgtagtacctaacattttcttttttgctttccatgatgaacttaagctcatgggagttctataagctactagaagagttctttattagtttatggttgcgatagctgtagacctttatctatactactggtatatagaactttttctatatttctttaacaataaaagaatgaaaattttgcattaggttaggaaaacagaaaatgctatgaattctagtgttaattgttgaacaggaaaagatatatgaccatctaactacattaatccactcattgctagtgccacacaccaatttgatctaaaaccatttgattcaatagaattaacttatataatgagaattatttttgcacacaattgttttgggcactcatattgcttcagtttgagaaaatgataattAaataatctcttatttatacatatatacggtttatcatttcactaatccatgccccttctattcccatggggataggtacttgattgttatTGAtgatgtatgggacacatcaaaatggaacattattaaatgtgctctgattgatagtaattgtggaagcagagtaatcacaacaactcgtatttgtctagttgccaatgaagttgctgaagaatttggtggtgtttacattatggaaccactttctgatgacaactcAaaaaagttattctacagtaaaatatttggttctacctacaatggttcaactggtaatcaatcggtcgaggcaaccgaaaagatcttaaagaaatgtggtggcataccactatctataattacaatatctagtttgttagttgataaacctgtaggagactggtctgcaatttacgactctattggttttgggactggagatcaaaatgaggcagttcagaacataaggaagatattgtcttttagctactatcacttgcccacatacctaaagacatgtatgttgtacctgagcatatatccagaagatcatttgattggaatggatactttgatatggaagtGggtagccgaagactttatccaggaggaacaagataaggagttatttgaggtcggcaagaggtactttattgatcttatcaATaaaagcatgatccagccaatagaggaagagggcagtgtgtttggctgccgcatacatgacatggtattagatctcatccaaaacataacagctgaaggaaacttcataaaaatattcaagaaactacatgaggtgcgcaggctgtcttcacagaggactactgttcgtaggatagcactgcacgacaattggaaccaactcaaaaacaatgacctggatgttgccctgacaaaattgaggtcattcaatgccatcgagtgtactatcagcatgatgccctctcttctgagcttccaggttctacgcgtgctagagctacaaggctgaaacgtcacgggaggtttatacctcaagcatatcggaaagctacatcagttgaggtacctaggtatgaaagacacacgtgttgctgagcttccgatggaaataggggatctcgtgcacctgcaaacactggatgttcgttacacaggcctaaaggaactgccgtcaaccatttgtaagctaagcaagctgatgcggctgtgcgtcgctggaggaacgagcgtgccaatgggtgttgggaatctgagttcactgcaatacctaaagttgggctgggattccatcaaaagtaacaaatactttgccatggaggtcggcaagctgatggagctgagaatcctcaacatttgtgtagataacgagattgacgagagcatgaagaaggctttgctagaatcactgtgcggcttgcgtaaactctag
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| CDS seq | atgccatgtcttagtgatccatctggaatggagttcgctacaGGggtaatgagcacgcttctttccaagctagcggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggagggggtaacatttctcatggctgagctcaagagcatacaagctgcacttgaaaaggtctcaaaggtgccgctagACCAacttgatgagcaaaccaagatctgggcttgggacattagggagttgtcctatgacatggaggacaacattgataccttcatgctacgtgtggatggtcttgagccagccaagaaacataatttcacatgcttagttgacaagtgccaaaagtctttgtccaagataaagatctgctacaaaatagccaatgaaattaaagatatcaagagccaagtAaaggagcttgttgggattgacaaggcaaGggatgatctaatgaagagattgtctgtgggggatgaagcgctcaagaagctcaagatggtctctgttgtcggaattggaggattgggcaagacaactccttccAaagtagtgtttgacatgcttaaattgcaatttgattgtgctgcttttgttcctgtcggtcaaagccctgaaatcaagaaagtcctaaaggacattctagttgaacttaacaagcaaaagtacatgtcatttgatgttaccgcagtaagtgaaaggcatatgattaatgagcttcgagaataccttgacaataagaggtacttgattgttatTGAtgatgtatgggacacatcaaaatggaacattattaaatgtgctctgattgatagtaattgtggaagcagagtaatcacaacaactcgtatttgtctagttgccaatgaagttgctgaagaatttggtggtgtttacattatggaaccactttctgatgacaactcAaaaaagttattctacagtaaaatatttggttctacctacaatggttcaactggtaatcaatcggtcgaggcaaccgaaaagatcttaaagaaatgtggtggcataccactatctataattacaatatctagtttgttagttgataaacctgtaggagactggtctgcaatttacgactctattggttttgggactggagatcaaaatgaggcagttcagaacataaggaagatattgtcttttagctactatcacttgcccacatacctaaagacatgtatgttgtacctgagcatatatccagaagatcatttgattggaatggatactttgatatggaagtGggtagccgaagactttatccaggaggaacaagataaggagttatttgaggtcggcaagaggtactttattgatcttatcaATaaaagcatgatccagccaatagaggaagagggcagtgtgtttggctgccgcatacatgacatggtattagatctcatccaaaacataacagctgaaggaaacttcataaaaatattcaagaaactacatgaggtgcgcaggctgtcttcacagaggactactgttcgtaggatagcactgcacgacaattggaaccaactcaaaaacaatgacctggatgttgccctgacaaaattgaggtcattcaatgccatcgagtgtactatcagcatgatgccctctcttctgagcttccagcatatcggaaagctacatcagttgaggtacctaggtatgaaagacacacgtgttgctgagcttccgatggaaataggggatctcgtgcacctgcaaacactggatgttcgttacacaggcctaaaggaactgccgtcaaccatttgtaagctaagcaagctgatgcggctgtgcgtcgctggaggaacgagcgtgccaatgggtgttgggaatctgagttcactgcaatacctaaagttgggctgggattccatcaaaagtaacaaatactttgccatggaggtcggcaagctgatggagctgagaatcctcaacatttgtgtagataacgagattgacgagagcatgaagaaggctttgctagaatcactgtgcggcttgcgtaaactctag
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| Protein seq | MPCLSDPSGMEFATGVMSTLLSKLAELLKEQYDLQKSVKEGVTFLMAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRVDGLEPAKKHNFTCLVDKCQKSLSKIKICYKIANEIKDIKSQVKELVGIDKARDDLMKRLSVGDEALKKLKMVSVVGIGGLGKTTPSKVVFDMLKLQFDCAAFVPVGQSPEIKKVLKDILVELNKQKYMSFDVTAVSERHMINELREYLDNKRYLIVIDDVWDTSKWNIIKCALIDSNCGSRVITTTRICLVANEVAEEFGGVYIMEPLSDDNSKKLFYSKIFGSTYNGSTGNQSVEATEKILKKCGGIPLSIITISSLLVDKPVGDWSAIYDSIGFGTGDQNEAVQNIRKILSFSYYHLPTYLKTCMLYLSIYPEDHLIGMDTLIWKWVAEDFIQEEQDKELFEVGKRYFIDLINKSMIQPIEEEGSVFGCRIHDMVLDLIQNITAEGNFIKIFKKLHEVRRLSSQRTTVRRIALHDNWNQLKNNDLDVALTKLRSFNAIECTISMMPSLLSFQHIGKLHQLRYLGMKDTRVAELPMEIGDLVHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTSVPMGVGNLSSLQYLKLGWDSIKSNKYFAMEVGKLMELRILNICVDNEIDESMKKALLESLCGLRKL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0018990 | OsLima_11g0018990.01 | Chr11 | 24385031 | 24387719 | + | NAM | ||
| CDS seq | atgccatgtcttagtgatccatctggaatggagttcgctacaGGggtaatgagcacgcttctttccaagctagcggagctgctcaaggaacaatatgatctgcagaagagtgtgaaggagggggtaacatttctcatggctgagctcaagagcatacaagctgcacttgaaaaggtctcaaaggtgccgctagACCAacttgatgagcaaaccaagatctgggcttgggacattagggagttgtcctatgacatggaggacaacattgataccttcatgctacgtgtggatggtcttgagccagccaagaaacataatttcacatgcttagttgacaagtgccaaaagtctttgtccaagataaagatctgctacaaaatagccaatgaaattaaagatatcaagagccaagtAaaggagcttgttgggattgacaaggcaaGggatgatctaatgaagagattgtctgtgggggatgaagcgctcaagaagctcaagatggtctctgttgtcggaattggaggattgggcaagacaactccttccAaagtagtgtttgacatgcttaaattgcaatttgattgtgctgcttttgttcctgtcggtcaaagccctgaaatcaagaaagtcctaaaggacattctagttgaacttaacaagcaaaagtacatgtcatttgatgttaccgcagtaagtgaaaggcatatgattaatgagcttcgagaataccttgacaataagaggtacttgattgttatTGAtgatgtatgggacacatcaaaatggaacattattaaatgtgctctgattgatagtaattgtggaagcagagtaatcacaacaactcgtatttgtctagttgccaatgaagttgctgaagaatttggtggtgtttacattatggaaccactttctgatgacaactcAaaaaagttattctacagtaaaatatttggttctacctacaatggttcaactggtaatcaatcggtcgaggcaaccgaaaagatcttaaagaaatgtggtggcataccactatctataattacaatatctagtttgttagttgataaacctgtaggagactggtctgcaatttacgactctattggttttgggactggagatcaaaatgaggcagttcagaacataaggaagatattgtcttttagctactatcacttgcccacatacctaaagacatgtatgttgtacctgagcatatatccagaagatcatttgattggaatggatactttgatatggaagtGggtagccgaagactttatccaggaggaacaagataaggagttatttgaggtcggcaagaggtactttattgatcttatcaATaaaagcatgatccagccaatagaggaagagggcagtgtgtttggctgccgcatacatgacatggtattagatctcatccaaaacataacagctgaaggaaacttcataaaaatattcaagaaactacatgaggtgcgcaggctgtcttcacagaggactactgttcgtaggatagcactgcacgacaattggaaccaactcaaaaacaatgacctggatgttgccctgacaaaattgaggtcattcaatgccatcgagtgtactatcagcatgatgccctctcttctgagcttccagcatatcggaaagctacatcagttgaggtacctaggtatgaaagacacacgtgttgctgagcttccgatggaaataggggatctcgtgcacctgcaaacactggatgttcgttacacaggcctaaaggaactgccgtcaaccatttgtaagctaagcaagctgatgcggctgtgcgtcgctggaggaacgagcgtgccaatgggtgttgggaatctgagttcactgcaatacctaaagttgggctgggattccatcaaaagtaacaaatactttgccatggaggtcggcaagctgatggagctgagaatcctcaacatttgtgtagataacgagattgacgagagcatgaagaaggctttgctagaatcactgtgcggcttgcgtaaactctag
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| Protein seq | MPCLSDPSGMEFATGVMSTLLSKLAELLKEQYDLQKSVKEGVTFLMAELKSIQAALEKVSKVPLDQLDEQTKIWAWDIRELSYDMEDNIDTFMLRVDGLEPAKKHNFTCLVDKCQKSLSKIKICYKIANEIKDIKSQVKELVGIDKARDDLMKRLSVGDEALKKLKMVSVVGIGGLGKTTPSKVVFDMLKLQFDCAAFVPVGQSPEIKKVLKDILVELNKQKYMSFDVTAVSERHMINELREYLDNKRYLIVIDDVWDTSKWNIIKCALIDSNCGSRVITTTRICLVANEVAEEFGGVYIMEPLSDDNSKKLFYSKIFGSTYNGSTGNQSVEATEKILKKCGGIPLSIITISSLLVDKPVGDWSAIYDSIGFGTGDQNEAVQNIRKILSFSYYHLPTYLKTCMLYLSIYPEDHLIGMDTLIWKWVAEDFIQEEQDKELFEVGKRYFIDLINKSMIQPIEEEGSVFGCRIHDMVLDLIQNITAEGNFIKIFKKLHEVRRLSSQRTTVRRIALHDNWNQLKNNDLDVALTKLRSFNAIECTISMMPSLLSFQHIGKLHQLRYLGMKDTRVAELPMEIGDLVHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGTSVPMGVGNLSSLQYLKLGWDSIKSNKYFAMEVGKLMELRILNICVDNEIDESMKKALLESLCGLRKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.055342 | 0.033695 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588400 | SBH | 0.531363 | 0.225563 | 1.781642 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37740 | SBH | 0.198322 | 0.151710 | 0.421721 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018730 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018890 | SBH | 0.083474 | 0.000000 | 0.872841 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018670 | SBH | 0.0 | 0.000000 | 2.007686 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018310 | RBH | 0.000000 | 0.310080 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018700 | SBH | 1.567390 | 3.916554 | 13.040835 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0344100 | SBH | 1.6615 | 10.40998 | 4.9731405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019230 | SBH | 0.065155 | 0.275563 | 1.610033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0356800 | SBH | 1.8868395 | 5.834602 | 6.9888025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019190 | RBH | 0.130008 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018650 | RBH | 2.042731 | 18.328106 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018410 | RBH | 0.276143 | 0.0 | 0.944027 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018560 | SBH | 0.187229 | 1.704459 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018730 | SBH | 0.222103 | 2.844661 | 3.268044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018910 | RBH | 1.242476 | 14.645596 | 6.533991 |
