Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0018750 | OGI:11064480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24106207-24107829 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgccgagccgccgccgccgcggcggtggcgcccgccgacccgcagctgctggcggcggcgttcgagtcggccatcgcgtcgcgctcgccgcgcctcggccgggccgcacacgcgcgagcgctgaggctgatcgccccggcactctcgcccttcatctgcgcgcacctcgtcaacctctactccaagctcgacctccccgcggcggcggcggcggctctcgcctccgacccacaccccaccgtggtttcgtacaccgctttcatatccggcgcggcgcagcacggccgccctctCccggcgctctccgcgttcgccggcatgctccgcctcggcctgcgccccaacgacttcaccttcccgtcggccttcaaggccgccgcttccgcgcctccgcgctccaccatcgggccccagatacactccctcgccatcaggtttggttacctccccgtcgaccccttcgtgtcctgcgcggcgctggacatgtacttcaagaccggacgcctcaagctggcccgccacctgtttggtgaaatgccgaacaggaacgtggttgcgtggaacgctgtcatgacgaatgctgtgctcgacgggaggcccctggagacaattgaggcttattttgggctccgggaggctggtgggcttccgaatgtggtctcggcctgtgcattcttcaacgcgtgtgctggggcgatgtacttgtcactcggggagcagttccatggcttcgttgtgaagtgtgggtttgagatggatgtctctgtgttgaattcaatggttgatttctatgggaagtgccgatgtgcagggaaggcaagggcggtatttgatggcatgggagttaggaatagcgtgtcctggtgttcaatggttgctgcatatgctcagaacggcgcagaagaggaggcttttgcagcatacctgggtgcaaggcgttctggggaagagccaacggatttcatggtttccagtgcgctcactacatgtgcagggctgctaggccttcaccttggacgcgctctgcatgcggttgctgtccgttcttgtattgatgcaaacatttttgttgcgagtgcattggttgacatgtatgggaagtgcggctgtgttgaagatgccgaacagattttttatgagacaccacagaggaatcttgtcacttggaatgcaatgatcggtggttatgctcacattggtgatgctcagaatgcacttctggtatttgatgatatgataaggagtggggagacagcacctaattacatcacccttgtcaatgtgatcacttcatgcagcagaggaggtttaacaaaggacggctatgaattgtttgagacaatgagggagaggttcgggatagagccacggactgagcattatgcttgtgtggttgacttgcttggtcgtgcaggaatggaagaacaggcttacgaggtcatacaggggatgcctatgagaccttccatttctgtatggggagctctacttggggcgtgcaaaatgcatgggaagacagaattgggaaggattgcagctgagaagttgtttgaacttgacccccaggactctggcaatcatgtactgctctcaaatatgtttgcttcagctggcaggtaa
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| CDS seq | atgcgccgagccgccgccgccgcggcggtggcgcccgccgacccgcagctgctggcggcggcgttcgagtcggccatcgcgtcgcgctcgccgcgcctcggccgggccgcacacgcgcgagcgctgaggctgatcgccccggcactctcgcccttcatctgcgcgcacctcgtcaacctctactccaagctcgacctccccgcggcggcggcggcggctctcgcctccgacccacaccccaccgtggtttcgtacaccgctttcatatccggcgcggcgcagcacggccgccctctCccggcgctctccgcgttcgccggcatgctccgcctcggcctgcgccccaacgacttcaccttcccgtcggccttcaaggccgccgcttccgcgcctccgcgctccaccatcgggccccagatacactccctcgccatcaggtttggttacctccccgtcgaccccttcgtgtcctgcgcggcgctggacatgtacttcaagaccggacgcctcaagctggcccgccacctgtttggtgaaatgccgaacaggaacgtggttgcgtggaacgctgtcatgacgaatgctgtgctcgacgggaggcccctggagacaattgaggcttattttgggctccgggaggctggtgggcttccgaatgtggtctcggcctgtgcattcttcaacgcgtgtgctggggcgatgtacttgtcactcggggagcagttccatggcttcgttgtgaagtgtgggtttgagatggatgtctctgtgttgaattcaatggttgatttctatgggaagtgccgatgtgcagggaaggcaagggcggtatttgatggcatgggagttaggaatagcgtgtcctggtgttcaatggttgctgcatatgctcagaacggcgcagaagaggaggcttttgcagcatacctgggtgcaaggcgttctggggaagagccaacggatttcatggtttccagtgcgctcactacatgtgcagggctgctaggccttcaccttggacgcgctctgcatgcggttgctgtccgttcttgtattgatgcaaacatttttgttgcgagtgcattggttgacatgtatgggaagtgcggctgtgttgaagatgccgaacagattttttatgagacaccacagaggaatcttgtcacttggaatgcaatgatcggtggttatgctcacattggtgatgctcagaatgcacttctggtatttgatgatatgataaggagtggggagacagcacctaattacatcacccttgtcaatgtgatcacttcatgcagcagaggaggtttaacaaaggacggctatgaattgtttgagacaatgagggagaggttcgggatagagccacggactgagcattatgcttgtgtggttgacttgcttggtcgtgcaggaatggaagaacaggcttacgaggtcatacaggggatgcctatgagaccttccatttctgtatggggagctctacttggggcgtgcaaaatgcatgggaagacagaattgggaaggattgcagctgagaagttgtttgaacttgacccccaggactctggcaatcatgtactgctctcaaatatgtttgcttcagctggcaggtaa
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| Protein seq | MRRAAAAAAVAPADPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGR |
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| Function | Pentatricopeptide repeat-containing protein At4g14850 [UniProtKB/Swiss-Prot:Q0WSH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0018750 | OsLima_11g0018750.01 | Chr11 | 24106207 | 24107829 | + | NAM | ||
| CDS seq | atgcgccgagccgccgccgccgcggcggtggcgcccgccgacccgcagctgctggcggcggcgttcgagtcggccatcgcgtcgcgctcgccgcgcctcggccgggccgcacacgcgcgagcgctgaggctgatcgccccggcactctcgcccttcatctgcgcgcacctcgtcaacctctactccaagctcgacctccccgcggcggcggcggcggctctcgcctccgacccacaccccaccgtggtttcgtacaccgctttcatatccggcgcggcgcagcacggccgccctctCccggcgctctccgcgttcgccggcatgctccgcctcggcctgcgccccaacgacttcaccttcccgtcggccttcaaggccgccgcttccgcgcctccgcgctccaccatcgggccccagatacactccctcgccatcaggtttggttacctccccgtcgaccccttcgtgtcctgcgcggcgctggacatgtacttcaagaccggacgcctcaagctggcccgccacctgtttggtgaaatgccgaacaggaacgtggttgcgtggaacgctgtcatgacgaatgctgtgctcgacgggaggcccctggagacaattgaggcttattttgggctccgggaggctggtgggcttccgaatgtggtctcggcctgtgcattcttcaacgcgtgtgctggggcgatgtacttgtcactcggggagcagttccatggcttcgttgtgaagtgtgggtttgagatggatgtctctgtgttgaattcaatggttgatttctatgggaagtgccgatgtgcagggaaggcaagggcggtatttgatggcatgggagttaggaatagcgtgtcctggtgttcaatggttgctgcatatgctcagaacggcgcagaagaggaggcttttgcagcatacctgggtgcaaggcgttctggggaagagccaacggatttcatggtttccagtgcgctcactacatgtgcagggctgctaggccttcaccttggacgcgctctgcatgcggttgctgtccgttcttgtattgatgcaaacatttttgttgcgagtgcattggttgacatgtatgggaagtgcggctgtgttgaagatgccgaacagattttttatgagacaccacagaggaatcttgtcacttggaatgcaatgatcggtggttatgctcacattggtgatgctcagaatgcacttctggtatttgatgatatgataaggagtggggagacagcacctaattacatcacccttgtcaatgtgatcacttcatgcagcagaggaggtttaacaaaggacggctatgaattgtttgagacaatgagggagaggttcgggatagagccacggactgagcattatgcttgtgtggttgacttgcttggtcgtgcaggaatggaagaacaggcttacgaggtcatacaggggatgcctatgagaccttccatttctgtatggggagctctacttggggcgtgcaaaatgcatgggaagacagaattgggaaggattgcagctgagaagttgtttgaacttgacccccaggactctggcaatcatgtactgctctcaaatatgtttgcttcagctggcaggtaa
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| Protein seq | MRRAAAAAAVAPADPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0583200 | RBH | 0.000000 | 0.249740 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37330 | RBH | 0.000000 | 0.167741 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0583200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018660 | RBH | 0.000000 | 0.0 | 0.392499 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018410 | RBH | 0.0 | 0.0 | 0.566997 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018030 | RBH | 0.043794 | 0.018172 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018430 | RBH | 0.645000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0340800 | RBH | 0.4338015 | 1.656587 | 0.455855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019000 | RBH | 0.000000 | 0.0 | 0.151873 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0352900 | RBH | 0.618092 | 1.865425 | 3.9473695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018160 | RBH | 0.0 | 0.0 | 0.141842 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018490 | RBH | 0.0 | 0.000000 | 0.650110 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018690 | RBH | 0.0 | 0.0 | 0.0 |
