Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0018270 | OGI:11063030 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23688334-23691798 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaggggtaaagatactagcccattccacttccaggctattgaaaagatacaattcagatagttgatcttcagcagagaggccatgaaaataaagttcaagtgaaggttcaagatcttggtcttcccattccaaaccatcccaccattcattctcaccgcgtatacatttcagtttgctcggaacggtaagAaatggaagtttcttcaacaaagggcatgcagaaatctgaaggcattccagcgagggaaatgagaagaacgggctgcagatcctaaccaatgcaccagcttcgatcagtgtcatccttttaagactggggaatgtattattaactgatagattttccttttcctgatttgtcttaacgacatcatcttgtgcactagcaataatccggtccaatcttgaacatgaaaatagcagcaaatcctctagaagcgggagatgaataatccatgaaatatgattcaatcttgaacaccgtactatatccaaacgtctgagttttgcaaaaATatctccagtgtgcagcttctggcatatgatcctatcaacgaaataaccatggaggtatgctttctcaacatgctgaacattccacattgaatgaatgctgtcaagcacaatagtcttttgtcttgtgtaaataccaagttcaaacaggtttgtttgtctttcaggattgatacaagaattttcagaagagacatgagtctcatacccatcttcatggttataaatgacaatagagagggaccgtattggtaaggttgtcttactaatcccttgaaacgaggtttctgaacgaacagtgattccaagggactgcaatttatccatacgcacaagctcattaattggcgcctcataggatgagcactgcagtaaattaaatgagcaaacatccagcaccaccaaattctggagttttggtagtataccatttggaataactagatttggattattccgaagatgcaagtgcctcagtctggtaagacagcctaactccactggtaccgtttttattctgttatttgacaaattcagatatcttaggttgacctgcatgcaaatctctacaggtatattggacaatttattaaaagagagatctaggtactgcagtgaaagcaacgaggggaagttcccgaaagaaccgtcttccaaataattgtgctggagtatcaagacttcaagggttttttgattgctaggaatacgaggcagttctgtaattttaagccccactaatagaacttgctctgccaatccccaattctctttggtttggattctccatttgttcttgtcctcgccttgattgtgtacaacccataaggcaaaatcacggattgtagattgcatttgcactgcctctccatcttctgctggctctaaaaggcaaaattcttgcaaggtggtaatatgagaaaaaccttcgttgtaagacgcttcaatgtcatccccttgtattaatcctgaccctatccagaagtctactaatttccgttgattaaatatatggccctctggccataaagaacacaacttgaagcaatctttcagaattcctgtcaagctgtcatacgcaagttttaatctgaaaaatgttgcctcttcactacctgaccattgagtgtcacgaaggcatgattcagtcagataatgaagggcattttgccaatatattgcatctttcttattgtgcatggcctttccaattgttaccagctccaaaggtgaaccaagcaattccgcggaaatatttcttggcaggtacatatgctgatggcccaagtaatcaagatcagcattctgcttgaaaatttcccatgactctgcatgatcaagacagtgaacctcaattctgttctccacttccacattcatttgatcacagacatggctagagcatgccgtgaaaACCactcttcggttgtagcagcttccaaccaagtcaagtgatggaataccaacttcttctagatccagtctctggcacacacagtcaagcaataaaaggaaatttctctccttcaagaagtcgaaaattcttgctctatgttgcatgccgtcacagttagccaacatgagtttcttggcaatttcactttgaacctgaaagtggccaagagttatatgctagaaatgcatcttatatgaaatgaaagggccaaattgtttatgggagtagctatatttatggcaccatatttttttaaaaaaaaaagtcggcatgtatttatattgtaactccttaaattatatatgtaattttagtgtatttacaatgtaagtcccaaaattgcatatgtaaatcctaatattacaattataaaacctaaatttacttactaattacatatgtaagtggtgtgcaagtgagggtgtaactactgtataaattcgtataaatatatagataattattaattttaggacggaggtgaagtgctaatgagcttggagcttgattaggtgcagttggttctttcgcataagctgtaagacgggtgcaggtgcttgatgctaacaaatcttatcggaggatctcacggttaaaacatcttactgtaatttgccgtaaaatatgtcgacacaaatttagtaataccggtttgtaaatacctcaactgaatatcctacctctaaaaaaaaagctgaatatcctagtgttatactacctcgcaataaatcagtatgcatgcatagattttattttagataatggaatatatgcatgtgtagatagtacctgggctacggaggaatctctcggagaggcgattcgcagcacgagatcgaaggtgtcatctcgggagaagtactcctcaacgagcttgagtaggtaagtcttccccaagccggcgcggccccagatcgcgacgatgccgttgggttggatcgtcctcaccctctcgatcgcggcccggagggtacgatccctgctcgcgaaccccgtggagatctccatcggttGggggagcttgctcctgcgcacgatccttCccccttcttcgcacagcctcttcacctgcggcatcatcagcgacgcgaccttgccgacgcggtagcagccgagcagatcgagggGCgtggcgccccagaagatgagcctggggatccggccgtgcgcgctccgcagctcgccgaaccggaggaggtagatctccgcctcctctgtccagGCCgccgccgtcgccagcctcctgccCCGccgcgccgccacacgggccctcctgcgcacgcactccctgacgtgcgccaggtgctcgcacgcgccacggaggacgtggaatcgagcgccggcgaaataatcccggttcctcaccattgctatcagtgaagctaggtcgagctccgtgctccatatgatcgtcgcggcgtcagatggagtcgccatggagaggcctccttcgtggtttctccaaaagtcaaaccacggaaccgccagctctc
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| CDS seq | atggcgactccatctgacgccgcgacgatcatatggagcacggagctcgacctagcttcactgatagcaatggtgaggaaccgggattatttcgccggcgctcgattccacgtcctccgtggcgcgtgcgagcacctggcgcacgtcagggagtgcgtgcgcaggagggcccgtgtggcggcgcggCGGggcaggaggctggcgacggcggcGGCctggacagaggaggcggagatctacctcctccggttcggcgagctgcggagcgcgcacggccggatccccaggctcatcttctggggcgccacGCccctcgatctgctcggctgctaccgcgtcggcaaggtcgcgtcgctgatgatgccgcaggtgaagaggctgtgcgaagaaggggGaaggatcgtgcgcaggagcaagctccccCaaccgatggagatctccacggggttcgcgagcagggatcgtaccctccgggccgcgatcgagagggtgaggacgatccaacccaacggcatcgtcgcgatctggggccgcgccggcttggggaagacttacctactcaagctcgttgaggagtacttctcccgagatgacaccttcgatctcgtgctgcgaatcgcctctccgagagattcctccgtagcccagaaactcatgttggctaactgtgacggcatgcaacatagagcaagaattttcgacttcttgaaggagagaaatttccttttattgcttgactgtgtgtgccagagactggatctagaagaagttggtattccatcacttgacttggttggaagctgctacaaccgaagagtGGTtttcacggcatgctctagccatgtctgtgatcaaatgaatgtggaagtggagaacagaattgaggttcactgtcttgatcatgcagagtcatgggaaattttcaagcagaatgctgatcttgattacttgggccatcagcatatgtacctgccaagaaatatttccgcggaattgcttggttcacctttggagctggtaacaattggaaaggccatgcacaataagaaagatgcaatatattggcaaaatgcccttcattatctgactgaatcatgccttcgtgacactcaatggtcaggtagtgaagaggcaacatttttcagattaaaacttgcgtatgacagcttgacaggaattctgaaagattgcttcaagttgtgttctttatggccagagggccatatatttaatcaacggaaattagtagacttctggatagggtcaggattaatacaaggggatgacattgaagcgtcttacaacgaaggtttttctcatattaccaccttgcaagaattttgccttttagagccagcagaagatggagaggcagtgcaaatgcaatctacaatccgtgattttgccttatgggttgtacacaatcaaggcgaggacaagaacaaatggagaatccaaaccaaagagaattggggattggcagagcaagttctattagtggggcttaaaattacagaactgcctcgtattcctagcaatcaaaaaacccttgaagtcttgatactccagcacaattatttggaagacggttctttcgggaacttcccctcgttgctttcactgcagtacctagatctctcttttaataaattgtccaatatacctgtagagatttgcatgcaggtcaacctaagatatctgaatttgtcaaataacagaataaaaacggtaccagtggagttaggctgtcttaccagactgaggcacttgcatcttcggaataatccaaatctagttattccaaatggtatactaccaaaactccagaatttggtggtgctggatgtttgctcatttaatttactgcagtgctcatcctatgaggcgccaattaatgagcttgtgcgtatggataaattgcagtcccttggaatcactgttcgttcagaaacctcgtttcaagggattagtaagacaaccttaccaatacggtccctctctattgtcatttataaccatgaagatgggtatgagactcatgtctcttctgaaaattcttgtatcaatcctgaaagacaaacaaacctgtttgaacttggtatttacacaagacaaaagactattgtgcttgacagcattcattcaatgtggaatgttcagcatgttgagaaagcatacctccatggttatttcgttgataggatcatatgccagaagctgcacactggagatATttttgcaaaactcagacgtttggatatagtacggtgttcaagattgaatcatatttcatggattattcatctcccgcttctagaggatttgctgctattttcatgttcaagattggaccggattattgctagtgcacaagatgatgtcgttaagacaaatcaggaaaaggaaaatctatcagttaataatacattccccagtcttaaaaggatgacactgatcgaagctggtgcattggttaggatctgcagcccgttcttctcatttccctcgctggaatgccttcagatttctgcatgccctttgttgaagaaacttccattTcttaccgttccgagcaaactgaaatgtatacgcggtgagaatgaatggtgggatggtttggaatgggaagaccaagatcttgaaccttcacttgaactttattttcatggcctctctgctgaagatcaactatctgaattgtatcttttcaatagcctggaagtggaatgggctagtatctttaccccttga
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| Protein seq | MATPSDAATIIWSTELDLASLIAMVRNRDYFAGARFHVLRGACEHLAHVRECVRRRARVAARRGRRLATAAAWTEEAEIYLLRFGELRSAHGRIPRLIFWGATPLDLLGCYRVGKVASLMMPQVKRLCEEGGRIVRRSKLPQPMEISTGFASRDRTLRAAIERVRTIQPNGIVAIWGRAGLGKTYLLKLVEEYFSRDDTFDLVLRIASPRDSSVAQKLMLANCDGMQHRARIFDFLKERNFLLLLDCVCQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHVCDQMNVEVENRIEVHCLDHAESWEIFKQNADLDYLGHQHMYLPRNISAELLGSPLELVTIGKAMHNKKDAIYWQNALHYLTESCLRDTQWSGSEEATFFRLKLAYDSLTGILKDCFKLCSLWPEGHIFNQRKLVDFWIGSGLIQGDDIEASYNEGFSHITTLQEFCLLEPAEDGEAVQMQSTIRDFALWVVHNQGEDKNKWRIQTKENWGLAEQVLLVGLKITELPRIPSNQKTLEVLILQHNYLEDGSFGNFPSLLSLQYLDLSFNKLSNIPVEICMQVNLRYLNLSNNRIKTVPVELGCLTRLRHLHLRNNPNLVIPNGILPKLQNLVVLDVCSFNLLQCSSYEAPINELVRMDKLQSLGITVRSETSFQGISKTTLPIRSLSIVIYNHEDGYETHVSSENSCINPERQTNLFELGIYTRQKTIVLDSIHSMWNVQHVEKAYLHGYFVDRIICQKLHTGDIFAKLRRLDIVRCSRLNHISWIIHLPLLEDLLLFSCSRLDRIIASAQDDVVKTNQEKENLSVNNTFPSLKRMTLIEAGALVRICSPFFSFPSLECLQISACPLLKKLPFLTVPSKLKCIRGENEWWDGLEWEDQDLEPSLELYFHGLSAEDQLSELYLFNSLEVEWASIFTP |
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| Function | Disease resistance protein RPS5 [UniProtKB/Swiss-Prot:O64973] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0018270 | OsLima_11g0018270.01 | Chr11 | 23688334 | 23691798 | - | NAM | ||
| CDS seq | atggcgactccatctgacgccgcgacgatcatatggagcacggagctcgacctagcttcactgatagcaatggtgaggaaccgggattatttcgccggcgctcgattccacgtcctccgtggcgcgtgcgagcacctggcgcacgtcagggagtgcgtgcgcaggagggcccgtgtggcggcgcggCGGggcaggaggctggcgacggcggcGGCctggacagaggaggcggagatctacctcctccggttcggcgagctgcggagcgcgcacggccggatccccaggctcatcttctggggcgccacGCccctcgatctgctcggctgctaccgcgtcggcaaggtcgcgtcgctgatgatgccgcaggtgaagaggctgtgcgaagaaggggGaaggatcgtgcgcaggagcaagctccccCaaccgatggagatctccacggggttcgcgagcagggatcgtaccctccgggccgcgatcgagagggtgaggacgatccaacccaacggcatcgtcgcgatctggggccgcgccggcttggggaagacttacctactcaagctcgttgaggagtacttctcccgagatgacaccttcgatctcgtgctgcgaatcgcctctccgagagattcctccgtagcccagaaactcatgttggctaactgtgacggcatgcaacatagagcaagaattttcgacttcttgaaggagagaaatttccttttattgcttgactgtgtgtgccagagactggatctagaagaagttggtattccatcacttgacttggttggaagctgctacaaccgaagagtGGTtttcacggcatgctctagccatgtctgtgatcaaatgaatgtggaagtggagaacagaattgaggttcactgtcttgatcatgcagagtcatgggaaattttcaagcagaatgctgatcttgattacttgggccatcagcatatgtacctgccaagaaatatttccgcggaattgcttggttcacctttggagctggtaacaattggaaaggccatgcacaataagaaagatgcaatatattggcaaaatgcccttcattatctgactgaatcatgccttcgtgacactcaatggtcaggtagtgaagaggcaacatttttcagattaaaacttgcgtatgacagcttgacaggaattctgaaagattgcttcaagttgtgttctttatggccagagggccatatatttaatcaacggaaattagtagacttctggatagggtcaggattaatacaaggggatgacattgaagcgtcttacaacgaaggtttttctcatattaccaccttgcaagaattttgccttttagagccagcagaagatggagaggcagtgcaaatgcaatctacaatccgtgattttgccttatgggttgtacacaatcaaggcgaggacaagaacaaatggagaatccaaaccaaagagaattggggattggcagagcaagttctattagtggggcttaaaattacagaactgcctcgtattcctagcaatcaaaaaacccttgaagtcttgatactccagcacaattatttggaagacggttctttcgggaacttcccctcgttgctttcactgcagtacctagatctctcttttaataaattgtccaatatacctgtagagatttgcatgcaggtcaacctaagatatctgaatttgtcaaataacagaataaaaacggtaccagtggagttaggctgtcttaccagactgaggcacttgcatcttcggaataatccaaatctagttattccaaatggtatactaccaaaactccagaatttggtggtgctggatgtttgctcatttaatttactgcagtgctcatcctatgaggcgccaattaatgagcttgtgcgtatggataaattgcagtcccttggaatcactgttcgttcagaaacctcgtttcaagggattagtaagacaaccttaccaatacggtccctctctattgtcatttataaccatgaagatgggtatgagactcatgtctcttctgaaaattcttgtatcaatcctgaaagacaaacaaacctgtttgaacttggtatttacacaagacaaaagactattgtgcttgacagcattcattcaatgtggaatgttcagcatgttgagaaagcatacctccatggttatttcgttgataggatcatatgccagaagctgcacactggagatATttttgcaaaactcagacgtttggatatagtacggtgttcaagattgaatcatatttcatggattattcatctcccgcttctagaggatttgctgctattttcatgttcaagattggaccggattattgctagtgcacaagatgatgtcgttaagacaaatcaggaaaaggaaaatctatcagttaataatacattccccagtcttaaaaggatgacactgatcgaagctggtgcattggttaggatctgcagcccgttcttctcatttccctcgctggaatgccttcagatttctgcatgccctttgttgaagaaacttccattTcttaccgttccgagcaaactgaaatgtatacgcggtgagaatgaatggtgggatggtttggaatgggaagaccaagatcttgaaccttcacttgaactttattttcatggcctctctgctgaagatcaactatctgaattgtatcttttcaatagcctggaagtggaatgggctagtatctttaccccttga
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| Protein seq | MATPSDAATIIWSTELDLASLIAMVRNRDYFAGARFHVLRGACEHLAHVRECVRRRARVAARRGRRLATAAAWTEEAEIYLLRFGELRSAHGRIPRLIFWGATPLDLLGCYRVGKVASLMMPQVKRLCEEGGRIVRRSKLPQPMEISTGFASRDRTLRAAIERVRTIQPNGIVAIWGRAGLGKTYLLKLVEEYFSRDDTFDLVLRIASPRDSSVAQKLMLANCDGMQHRARIFDFLKERNFLLLLDCVCQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHVCDQMNVEVENRIEVHCLDHAESWEIFKQNADLDYLGHQHMYLPRNISAELLGSPLELVTIGKAMHNKKDAIYWQNALHYLTESCLRDTQWSGSEEATFFRLKLAYDSLTGILKDCFKLCSLWPEGHIFNQRKLVDFWIGSGLIQGDDIEASYNEGFSHITTLQEFCLLEPAEDGEAVQMQSTIRDFALWVVHNQGEDKNKWRIQTKENWGLAEQVLLVGLKITELPRIPSNQKTLEVLILQHNYLEDGSFGNFPSLLSLQYLDLSFNKLSNIPVEICMQVNLRYLNLSNNRIKTVPVELGCLTRLRHLHLRNNPNLVIPNGILPKLQNLVVLDVCSFNLLQCSSYEAPINELVRMDKLQSLGITVRSETSFQGISKTTLPIRSLSIVIYNHEDGYETHVSSENSCINPERQTNLFELGIYTRQKTIVLDSIHSMWNVQHVEKAYLHGYFVDRIICQKLHTGDIFAKLRRLDIVRCSRLNHISWIIHLPLLEDLLLFSCSRLDRIIASAQDDVVKTNQEKENLSVNNTFPSLKRMTLIEAGALVRICSPFFSFPSLECLQISACPLLKKLPFLTVPSKLKCIRGENEWWDGLEWEDQDLEPSLELYFHGLSAEDQLSELYLFNSLEVEWASIFTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.081524 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0572301 | RBH | 0.077901 | 0.239670 | 0.363227 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36410 | RBH | 0.052681 | 0.161198 | 0.093502 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0572301 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013910 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018120 | RBH | 0.0 | 1.103025 | 0.110428 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013830 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017560 | RBH | 0.038108 | 0.083739 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017990 | RBH | 0.000000 | 6.289792 | 1.114185 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0333900 | RBH | 0.2830275 | 6.8795765 | 0.597101 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018450 | RBH | 0.0 | 0.386973 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0346700 | RBH | 0.5704005 | 6.3627055 | 0.646986 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017890 | RBH | 0.0 | 4.498922 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017730 | RBH | 0.000000 | 0.0 | 0.164025 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017860 | RBH | 0.081988 | 3.989982 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017850 | RBH | 0.0 | 0.316298 | 0.252378 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018130 | RBH | 0.165591 | 3.672986 | 0.000000 |
